data_7M0T # _model_server_result.job_id hDlJXWswSfDsxrJzvSic3Q _model_server_result.datetime_utc '2024-11-09 02:31:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m0t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 7M0T # _exptl.entry_id 7M0T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7M0T _cell.length_a 116.964 _cell.length_b 116.964 _cell.length_c 129.733 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M0T _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 199 B ASN 195 1_555 E MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc2 A OD2 ASP 212 B ASP 208 1_555 E MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc3 D O1B ANP . B ANP 402 1_555 E MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc4 D O2A ANP . B ANP 402 1_555 E MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc5 B OD1 ASN 141 A ASN 581 1_555 G MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 B OD2 ASP 154 A ASP 594 1_555 G MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc7 F O1B ANP . A ANP 801 1_555 G MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc8 F O1A ANP . A ANP 801 1_555 G MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 57 n n PG O2G ANP sing 58 n n PG O3G ANP sing 59 n n PG N3B ANP sing 60 n n O2G HOG2 ANP sing 61 n n O3G HOG3 ANP sing 62 n n PB O1B ANP doub 63 n n PB O2B ANP sing 64 n n PB N3B ANP sing 65 n n PB O3A ANP sing 66 n n O2B HOB2 ANP sing 67 n n N3B HNB1 ANP sing 68 n n PA O1A ANP doub 69 n n PA O2A ANP sing 70 n n PA O3A ANP sing 71 n n PA O5' ANP sing 72 n n O2A HOA2 ANP sing 73 n n O5' C5' ANP sing 74 n n C5' C4' ANP sing 75 n n C5' "H5'1" ANP sing 76 n n C5' "H5'2" ANP sing 77 n n C4' O4' ANP sing 78 n n C4' C3' ANP sing 79 n n C4' H4' ANP sing 80 n n O4' C1' ANP sing 81 n n C3' O3' ANP sing 82 n n C3' C2' ANP sing 83 n n C3' H3' ANP sing 84 n n O3' HO3' ANP sing 85 n n C2' O2' ANP sing 86 n n C2' C1' ANP sing 87 n n C2' H2' ANP sing 88 n n O2' HO2' ANP sing 89 n n C1' N9 ANP sing 90 n n C1' H1' ANP sing 91 n n N9 C8 ANP sing 92 n y N9 C4 ANP sing 93 n y C8 N7 ANP doub 94 n y C8 H8 ANP sing 95 n n N7 C5 ANP sing 96 n y C5 C6 ANP sing 97 n y C5 C4 ANP doub 98 n y C6 N6 ANP sing 99 n n C6 N1 ANP doub 100 n y N6 HN61 ANP sing 101 n n N6 HN62 ANP sing 102 n n N1 C2 ANP sing 103 n y C2 N3 ANP doub 104 n y C2 H2 ANP sing 105 n n N3 C4 ANP sing 106 n y # _atom_sites.entry_id 7M0T _atom_sites.fract_transf_matrix[1][1] 0.00855 _atom_sites.fract_transf_matrix[1][2] 0.004936 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3EW B 1 401 502 3EW 3EW . D 4 ANP B 1 402 801 ANP ANP . E 5 MG B 1 403 802 MG MG . F 4 ANP A 1 801 801 ANP ANP . G 5 MG A 1 802 802 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 4 42.566 -28.665 -2.951 1 91.08 ? PG ANP 801 A 1 HETATM 2 O O1G ANP . . . F 4 42.335 -29.173 -1.573 1 91.25 ? O1G ANP 801 A 1 HETATM 3 O O2G ANP . . . F 4 41.881 -29.513 -4.073 1 85.5 ? O2G ANP 801 A 1 HETATM 4 O O3G ANP . . . F 4 41.902 -27.262 -3.047 1 88.62 ? O3G ANP 801 A 1 HETATM 5 P PB ANP . . . F 4 44.686 -30.054 -4.216 1 85.92 ? PB ANP 801 A 1 HETATM 6 O O1B ANP . . . F 4 43.616 -30.441 -5.177 1 81.55 ? O1B ANP 801 A 1 HETATM 7 O O2B ANP . . . F 4 46.007 -29.72 -4.967 1 81.22 ? O2B ANP 801 A 1 HETATM 8 N N3B ANP . . . F 4 44.218 -28.698 -3.315 1 91.5 ? N3B ANP 801 A 1 HETATM 9 P PA ANP . . . F 4 44.003 -32.6 -3.188 1 95.17 ? PA ANP 801 A 1 HETATM 10 O O1A ANP . . . F 4 42.766 -32.376 -3.967 1 89.68 -1 O1A ANP 801 A 1 HETATM 11 O O2A ANP . . . F 4 43.659 -32.869 -1.715 1 98.21 ? O2A ANP 801 A 1 HETATM 12 O O3A ANP . . . F 4 44.953 -31.29 -3.29 1 95.27 ? O3A ANP 801 A 1 HETATM 13 O O5' ANP . . . F 4 44.792 -33.835 -3.816 1 93.23 ? O5' ANP 801 A 1 HETATM 14 C C5' ANP . . . F 4 46.212 -34.041 -3.704 1 94.89 ? C5' ANP 801 A 1 HETATM 15 C C4' ANP . . . F 4 46.691 -34.956 -4.808 1 94.27 ? C4' ANP 801 A 1 HETATM 16 O O4' ANP . . . F 4 45.619 -35.831 -5.221 1 89.19 ? O4' ANP 801 A 1 HETATM 17 C C3' ANP . . . F 4 47.185 -34.255 -6.071 1 92.64 ? C3' ANP 801 A 1 HETATM 18 O O3' ANP . . . F 4 48.38 -34.837 -6.586 1 93.19 ? O3' ANP 801 A 1 HETATM 19 C C2' ANP . . . F 4 45.97 -34.338 -7.003 1 89.33 ? C2' ANP 801 A 1 HETATM 20 O O2' ANP . . . F 4 46.399 -34.198 -8.356 1 94.79 ? O2' ANP 801 A 1 HETATM 21 C C1' ANP . . . F 4 45.376 -35.697 -6.605 1 90.64 ? C1' ANP 801 A 1 HETATM 22 N N9 ANP . . . F 4 43.93 -35.891 -6.847 1 93.87 ? N9 ANP 801 A 1 HETATM 23 C C8 ANP . . . F 4 42.885 -35.204 -6.28 1 94.23 ? C8 ANP 801 A 1 HETATM 24 N N7 ANP . . . F 4 41.699 -35.604 -6.675 1 89.82 ? N7 ANP 801 A 1 HETATM 25 C C5 ANP . . . F 4 41.979 -36.638 -7.559 1 89.15 ? C5 ANP 801 A 1 HETATM 26 C C6 ANP . . . F 4 41.152 -37.474 -8.333 1 92.97 ? C6 ANP 801 A 1 HETATM 27 N N6 ANP . . . F 4 39.816 -37.404 -8.342 1 91.74 ? N6 ANP 801 A 1 HETATM 28 N N1 ANP . . . F 4 41.757 -38.397 -9.121 1 94.85 ? N1 ANP 801 A 1 HETATM 29 C C2 ANP . . . F 4 43.091 -38.472 -9.124 1 90.55 ? C2 ANP 801 A 1 HETATM 30 N N3 ANP . . . F 4 43.969 -37.739 -8.441 1 89.28 ? N3 ANP 801 A 1 HETATM 31 C C4 ANP . . . F 4 43.347 -36.831 -7.67 1 92.44 ? C4 ANP 801 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #