data_7M0U # _model_server_result.job_id Sde7ZvOPZo2NopeC9Eb-iA _model_server_result.datetime_utc '2024-11-29 04:27:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m0u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7M0U # _exptl.entry_id 7M0U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 441.227 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(4-bromo-2-fluorophenyl)amino]-4-fluoro-N-(2-hydroxyethoxy)-1-methyl-1H-benzimidazole-6-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7M0U _cell.length_a 115.722 _cell.length_b 115.722 _cell.length_c 129.62 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M0U _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 141 A ASN 581 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc2 A OD2 ASP 154 A ASP 594 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc3 C O1B ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc4 C O1A ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc5 B OD1 ASN 199 B ASN 195 1_555 G MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc6 B OD2 ASP 212 B ASP 208 1_555 G MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc7 F O1B ANP . B ANP 502 1_555 G MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc8 F O2A ANP . B ANP 502 1_555 G MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc9 G MG MG . B MG 503 1_555 I O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? # _chem_comp.formula 'C17 H15 Br F2 N4 O3' _chem_comp.formula_weight 441.227 _chem_comp.id QO7 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(4-bromo-2-fluorophenyl)amino]-4-fluoro-N-(2-hydroxyethoxy)-1-methyl-1H-benzimidazole-6-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C03 N04 QO7 doub 327 n y C03 N02 QO7 sing 328 n y N04 C05 QO7 sing 329 n y C01 N02 QO7 sing 330 n n N02 C06 QO7 sing 331 n y C05 C06 QO7 doub 332 n y C05 C10 QO7 sing 333 n y C06 C07 QO7 sing 334 n y F11 C10 QO7 sing 335 n n C10 C09 QO7 doub 336 n y C07 C08 QO7 doub 337 n y C09 C08 QO7 sing 338 n y C09 N12 QO7 sing 339 n n C08 C21 QO7 sing 340 n n N12 C13 QO7 sing 341 n n C25 O24 QO7 sing 342 n n C25 C26 QO7 sing 343 n n O24 N23 QO7 sing 344 n n C21 N23 QO7 sing 345 n n C21 O22 QO7 doub 346 n n C13 C18 QO7 doub 347 n y C13 C14 QO7 sing 348 n y C18 C17 QO7 sing 349 n y C26 O27 QO7 sing 350 n n F20 C14 QO7 sing 351 n n C14 C15 QO7 doub 352 n y C17 C16 QO7 doub 353 n y C15 C16 QO7 sing 354 n y C16 BR19 QO7 sing 355 n n C15 H1 QO7 sing 356 n n C17 H2 QO7 sing 357 n n C18 H3 QO7 sing 358 n n C01 H4 QO7 sing 359 n n C01 H5 QO7 sing 360 n n C01 H6 QO7 sing 361 n n C03 H7 QO7 sing 362 n n C07 H8 QO7 sing 363 n n C25 H9 QO7 sing 364 n n C25 H10 QO7 sing 365 n n C26 H11 QO7 sing 366 n n C26 H12 QO7 sing 367 n n N12 H13 QO7 sing 368 n n N23 H14 QO7 sing 369 n n O27 H15 QO7 sing 370 n n # _atom_sites.entry_id 7M0U _atom_sites.fract_transf_matrix[1][1] 0.008641 _atom_sites.fract_transf_matrix[1][2] 0.004989 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 801 801 ANP ANP . D 4 MG A 1 802 802 MG MG . E 5 QO7 B 1 501 501 QO7 BIN . F 3 ANP B 1 502 801 ANP ANP . G 4 MG B 1 503 802 MG MG . H 6 HOH A 1 901 6 HOH HOH . H 6 HOH A 2 902 5 HOH HOH . H 6 HOH A 3 903 4 HOH HOH . H 6 HOH A 4 904 9 HOH HOH . H 6 HOH A 5 905 10 HOH HOH . H 6 HOH A 6 906 7 HOH HOH . I 6 HOH B 1 601 1 HOH HOH . I 6 HOH B 2 602 2 HOH HOH . I 6 HOH B 3 603 11 HOH HOH . I 6 HOH B 4 604 12 HOH HOH . I 6 HOH B 5 605 3 HOH HOH . I 6 HOH B 6 606 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 QO7 . . . E 5 65.959 -25.055 6.539 1 78.63 ? C13 QO7 501 B 1 HETATM 2 C C14 QO7 . . . E 5 66.058 -26.187 7.335 1 81.19 ? C14 QO7 501 B 1 HETATM 3 C C15 QO7 . . . E 5 67.092 -26.282 8.259 1 82.38 ? C15 QO7 501 B 1 HETATM 4 C C16 QO7 . . . E 5 67.992 -25.231 8.355 1 83.69 ? C16 QO7 501 B 1 HETATM 5 C C17 QO7 . . . E 5 67.894 -24.101 7.564 1 81.27 ? C17 QO7 501 B 1 HETATM 6 C C18 QO7 . . . E 5 66.868 -24.016 6.649 1 80.03 ? C18 QO7 501 B 1 HETATM 7 C C21 QO7 . . . E 5 62.039 -24.371 5.728 1 86.33 ? C21 QO7 501 B 1 HETATM 8 C C01 QO7 . . . E 5 61.812 -20.193 2.149 1 75.55 ? C01 QO7 501 B 1 HETATM 9 C C03 QO7 . . . E 5 64.272 -20.445 1.767 1 84.77 ? C03 QO7 501 B 1 HETATM 10 C C05 QO7 . . . E 5 64.718 -22.118 3.102 1 86 ? C05 QO7 501 B 1 HETATM 11 C C06 QO7 . . . E 5 63.386 -21.826 3.177 1 85.64 ? C06 QO7 501 B 1 HETATM 12 C C07 QO7 . . . E 5 62.549 -22.576 4.051 1 88.81 ? C07 QO7 501 B 1 HETATM 13 C C08 QO7 . . . E 5 63.044 -23.599 4.846 1 82.41 ? C08 QO7 501 B 1 HETATM 14 C C09 QO7 . . . E 5 64.409 -23.907 4.784 1 79.93 ? C09 QO7 501 B 1 HETATM 15 C C10 QO7 . . . E 5 65.254 -23.18 3.914 1 86.4 ? C10 QO7 501 B 1 HETATM 16 C C25 QO7 . . . E 5 58.471 -24.487 6.037 1 104.88 ? C25 QO7 501 B 1 HETATM 17 C C26 QO7 . . . E 5 57.543 -25.547 6.637 1 96.29 ? C26 QO7 501 B 1 HETATM 18 F F11 QO7 . . . E 5 66.595 -23.449 3.815 1 86.88 ? F11 QO7 501 B 1 HETATM 19 F F20 QO7 . . . E 5 65.144 -27.203 7.215 1 82.06 ? F20 QO7 501 B 1 HETATM 20 N N02 QO7 . . . E 5 63.124 -20.789 2.348 1 75.96 ? N02 QO7 501 B 1 HETATM 21 N N04 QO7 . . . E 5 65.256 -21.246 2.203 1 82.36 ? N04 QO7 501 B 1 HETATM 22 N N12 QO7 . . . E 5 64.865 -25.024 5.598 1 73.45 ? N12 QO7 501 B 1 HETATM 23 N N23 QO7 . . . E 5 60.707 -23.796 5.965 1 90.76 ? N23 QO7 501 B 1 HETATM 24 O O22 QO7 . . . E 5 62.309 -25.442 6.167 1 86.08 ? O22 QO7 501 B 1 HETATM 25 O O24 QO7 . . . E 5 59.706 -24.456 6.744 1 105.27 ? O24 QO7 501 B 1 HETATM 26 O O27 QO7 . . . E 5 58.037 -26.756 6.135 1 102.02 ? O27 QO7 501 B 1 HETATM 27 BR BR19 QO7 . . . E 5 69.441 -25.337 9.617 1 113.47 ? BR19 QO7 501 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #