data_7M0U # _model_server_result.job_id vPC7RiIRxT3zDeN6ovJwig _model_server_result.datetime_utc '2024-11-08 04:01:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m0u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 7M0U # _exptl.entry_id 7M0U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7M0U _cell.length_a 115.722 _cell.length_b 115.722 _cell.length_c 129.62 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M0U _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 141 A ASN 581 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc2 A OD2 ASP 154 A ASP 594 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc3 C O1B ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc4 C O1A ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc5 B OD1 ASN 199 B ASN 195 1_555 G MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc6 B OD2 ASP 212 B ASP 208 1_555 G MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc7 F O1B ANP . B ANP 502 1_555 G MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc8 F O2A ANP . B ANP 502 1_555 G MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc9 G MG MG . B MG 503 1_555 I O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7M0U _atom_sites.fract_transf_matrix[1][1] 0.008641 _atom_sites.fract_transf_matrix[1][2] 0.004989 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 801 801 ANP ANP . D 4 MG A 1 802 802 MG MG . E 5 QO7 B 1 501 501 QO7 BIN . F 3 ANP B 1 502 801 ANP ANP . G 4 MG B 1 503 802 MG MG . H 6 HOH A 1 901 6 HOH HOH . H 6 HOH A 2 902 5 HOH HOH . H 6 HOH A 3 903 4 HOH HOH . H 6 HOH A 4 904 9 HOH HOH . H 6 HOH A 5 905 10 HOH HOH . H 6 HOH A 6 906 7 HOH HOH . I 6 HOH B 1 601 1 HOH HOH . I 6 HOH B 2 602 2 HOH HOH . I 6 HOH B 3 603 11 HOH HOH . I 6 HOH B 4 604 12 HOH HOH . I 6 HOH B 5 605 3 HOH HOH . I 6 HOH B 6 606 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 42.372 -28.105 -3.012 1 75.03 ? PG ANP 801 A 1 HETATM 2 O O1G ANP . . . C 3 42.334 -28.729 -1.643 1 72.97 ? O1G ANP 801 A 1 HETATM 3 O O2G ANP . . . C 3 41.779 -29.038 -4.152 1 65.71 ? O2G ANP 801 A 1 HETATM 4 O O3G ANP . . . C 3 41.578 -26.744 -2.999 1 69.03 ? O3G ANP 801 A 1 HETATM 5 P PB ANP . . . C 3 44.581 -29.233 -4.247 1 86.13 ? PB ANP 801 A 1 HETATM 6 O O1B ANP . . . C 3 43.559 -29.542 -5.271 1 63.94 ? O1B ANP 801 A 1 HETATM 7 O O2B ANP . . . C 3 45.96 -28.847 -4.799 1 63.74 ? O2B ANP 801 A 1 HETATM 8 N N3B ANP . . . C 3 44.011 -27.904 -3.388 1 77.83 ? N3B ANP 801 A 1 HETATM 9 P PA ANP . . . C 3 43.849 -31.827 -3.422 1 77.1 ? PA ANP 801 A 1 HETATM 10 O O1A ANP . . . C 3 42.596 -31.488 -4.148 1 72.24 -1 O1A ANP 801 A 1 HETATM 11 O O2A ANP . . . C 3 43.656 -32.401 -2.012 1 72.95 ? O2A ANP 801 A 1 HETATM 12 O O3A ANP . . . C 3 44.792 -30.513 -3.377 1 79.59 ? O3A ANP 801 A 1 HETATM 13 O O5' ANP . . . C 3 44.657 -32.86 -4.28 1 76.81 ? O5' ANP 801 A 1 HETATM 14 C C5' ANP . . . C 3 45.887 -33.459 -3.856 1 73.53 ? C5' ANP 801 A 1 HETATM 15 C C4' ANP . . . C 3 46.567 -34.203 -4.992 1 79.77 ? C4' ANP 801 A 1 HETATM 16 O O4' ANP . . . C 3 45.672 -35.193 -5.543 1 77.88 ? O4' ANP 801 A 1 HETATM 17 C C3' ANP . . . C 3 47.036 -33.372 -6.181 1 78.93 ? C3' ANP 801 A 1 HETATM 18 O O3' ANP . . . C 3 48.193 -33.939 -6.789 1 82.94 ? O3' ANP 801 A 1 HETATM 19 C C2' ANP . . . C 3 45.835 -33.447 -7.125 1 73.39 ? C2' ANP 801 A 1 HETATM 20 O O2' ANP . . . C 3 46.273 -33.125 -8.443 1 80.61 ? O2' ANP 801 A 1 HETATM 21 C C1' ANP . . . C 3 45.35 -34.886 -6.884 1 74.44 ? C1' ANP 801 A 1 HETATM 22 N N9 ANP . . . C 3 43.907 -35.119 -7.034 1 75.95 ? N9 ANP 801 A 1 HETATM 23 C C8 ANP . . . C 3 42.888 -34.458 -6.4 1 76.73 ? C8 ANP 801 A 1 HETATM 24 N N7 ANP . . . C 3 41.688 -34.901 -6.7 1 75.14 ? N7 ANP 801 A 1 HETATM 25 C C5 ANP . . . C 3 41.941 -35.94 -7.582 1 73.09 ? C5 ANP 801 A 1 HETATM 26 C C6 ANP . . . C 3 41.085 -36.82 -8.275 1 69.13 ? C6 ANP 801 A 1 HETATM 27 N N6 ANP . . . C 3 39.755 -36.791 -8.178 1 73.74 ? N6 ANP 801 A 1 HETATM 28 N N1 ANP . . . C 3 41.654 -37.737 -9.08 1 71.48 ? N1 ANP 801 A 1 HETATM 29 C C2 ANP . . . C 3 42.985 -37.77 -9.184 1 72.79 ? C2 ANP 801 A 1 HETATM 30 N N3 ANP . . . C 3 43.892 -36.998 -8.583 1 73.07 ? N3 ANP 801 A 1 HETATM 31 C C4 ANP . . . C 3 43.3 -36.098 -7.79 1 74.91 ? C4 ANP 801 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #