data_7M0Y # _model_server_result.job_id XXWbLUbPpsyeiUFP6L2DPw _model_server_result.datetime_utc '2024-11-08 04:37:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m0y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 7M0Y # _exptl.entry_id 7M0Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7M0Y _cell.length_a 116.716 _cell.length_b 116.716 _cell.length_c 129.483 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M0Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 141 A ASN 581 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 A OD2 ASP 154 A ASP 594 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc3 C O2G ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc4 C O1B ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc5 C O1A ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc6 B OD1 ASN 199 B ASN 195 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc7 B OD1 ASP 212 B ASP 208 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc8 E O1B ANP . B ANP 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc9 E O2A ANP . B ANP 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7M0Y _atom_sites.fract_transf_matrix[1][1] 0.008568 _atom_sites.fract_transf_matrix[1][2] 0.004947 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 801 801 ANP ANP . D 4 MG A 1 802 802 MG MG . E 3 ANP B 1 401 400 ANP ANP . F 4 MG B 1 402 410 MG MG . G 5 SO4 B 1 403 1 SO4 SO4 . H 6 QOM B 1 404 402 QOM QOM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 3 56.361 -23.655 9.578 1 103.51 ? PG ANP 401 B 1 HETATM 2 O O1G ANP . . . E 3 55.244 -22.714 9.23 1 110.5 ? O1G ANP 401 B 1 HETATM 3 O O2G ANP . . . E 3 57.775 -22.973 9.306 1 88.71 -1 O2G ANP 401 B 1 HETATM 4 O O3G ANP . . . E 3 56.259 -24.965 8.681 1 105.79 ? O3G ANP 401 B 1 HETATM 5 P PB ANP . . . E 3 57.187 -25.068 11.898 1 90.51 ? PB ANP 401 B 1 HETATM 6 O O1B ANP . . . E 3 58.521 -24.365 11.908 1 80.21 -1 O1B ANP 401 B 1 HETATM 7 O O2B ANP . . . E 3 56.649 -25.446 13.332 1 80.4 ? O2B ANP 401 B 1 HETATM 8 N N3B ANP . . . E 3 56.064 -24.037 11.206 1 88.87 ? N3B ANP 401 B 1 HETATM 9 P PA ANP . . . E 3 58.693 -27.079 10.612 1 86.38 ? PA ANP 401 B 1 HETATM 10 O O1A ANP . . . E 3 58.53 -27.583 9.209 1 82.84 -1 O1A ANP 401 B 1 HETATM 11 O O2A ANP . . . E 3 59.871 -26.095 10.773 1 76.31 ? O2A ANP 401 B 1 HETATM 12 O O3A ANP . . . E 3 57.311 -26.376 11.043 1 92.18 ? O3A ANP 401 B 1 HETATM 13 O O5' ANP . . . E 3 58.792 -28.309 11.664 1 76.49 ? O5' ANP 401 B 1 HETATM 14 C C5' ANP . . . E 3 57.706 -28.646 12.593 1 78.5 ? C5' ANP 401 B 1 HETATM 15 C C4' ANP . . . E 3 58.231 -29.094 13.947 1 78.14 ? C4' ANP 401 B 1 HETATM 16 O O4' ANP . . . E 3 59.35 -29.974 13.746 1 70.45 ? O4' ANP 401 B 1 HETATM 17 C C3' ANP . . . E 3 58.736 -27.986 14.877 1 77.82 ? C3' ANP 401 B 1 HETATM 18 O O3' ANP . . . E 3 57.729 -27.412 15.72 1 76.64 ? O3' ANP 401 B 1 HETATM 19 C C2' ANP . . . E 3 59.853 -28.675 15.686 1 71.51 ? C2' ANP 401 B 1 HETATM 20 O O2' ANP . . . E 3 59.416 -29.057 16.981 1 76.17 ? O2' ANP 401 B 1 HETATM 21 C C1' ANP . . . E 3 60.213 -29.923 14.863 1 68.12 ? C1' ANP 401 B 1 HETATM 22 N N9 ANP . . . E 3 61.595 -29.918 14.379 1 69.5 ? N9 ANP 401 B 1 HETATM 23 C C8 ANP . . . E 3 62.067 -29.405 13.193 1 71.27 ? C8 ANP 401 B 1 HETATM 24 N N7 ANP . . . E 3 63.369 -29.519 13.041 1 68.4 ? N7 ANP 401 B 1 HETATM 25 C C5 ANP . . . E 3 63.783 -30.151 14.208 1 69.17 ? C5 ANP 401 B 1 HETATM 26 C C6 ANP . . . E 3 65.054 -30.571 14.668 1 65.57 ? C6 ANP 401 B 1 HETATM 27 N N6 ANP . . . E 3 66.192 -30.406 13.983 1 65.08 ? N6 ANP 401 B 1 HETATM 28 N N1 ANP . . . E 3 65.115 -31.182 15.878 1 62.51 ? N1 ANP 401 B 1 HETATM 29 C C2 ANP . . . E 3 63.984 -31.343 16.575 1 65.46 ? C2 ANP 401 B 1 HETATM 30 N N3 ANP . . . E 3 62.736 -30.985 16.249 1 65.96 ? N3 ANP 401 B 1 HETATM 31 C C4 ANP . . . E 3 62.701 -30.395 15.046 1 67.78 ? C4 ANP 401 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #