data_7M0Y # _model_server_result.job_id ViL8YC8N5rt_UvBKUZL3zA _model_server_result.datetime_utc '2024-11-08 04:35:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m0y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":404}' # _entry.id 7M0Y # _exptl.entry_id 7M0Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 615.395 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Trametinib _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7M0Y _cell.length_a 116.716 _cell.length_b 116.716 _cell.length_c 129.483 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M0Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 141 A ASN 581 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 A OD2 ASP 154 A ASP 594 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc3 C O2G ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc4 C O1B ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc5 C O1A ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc6 B OD1 ASN 199 B ASN 195 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc7 B OD1 ASP 212 B ASP 208 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc8 E O1B ANP . B ANP 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc9 E O2A ANP . B ANP 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C26 H23 F I N5 O4' _chem_comp.formula_weight 615.395 _chem_comp.id QOM _chem_comp.mon_nstd_flag . _chem_comp.name Trametinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-(3-{3-cyclopropyl-5-[(2-fluoro-4-iodophenyl)amino]-6,8-dimethyl-2,4,7-trioxo-3,4,6,7-tetrahydropyrido[4,3-d]pyrimidin-1(2H)-yl}phenyl)acetamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N31 C32 QOM sing 325 n n N31 C29 QOM sing 326 n n C34 C32 QOM sing 327 n n C32 O33 QOM doub 328 n n C29 C30 QOM doub 329 n y C29 C28 QOM sing 330 n y C30 C25 QOM sing 331 n y C01 C02 QOM sing 332 n n C28 C27 QOM doub 333 n y O08 C07 QOM doub 334 n n C25 C26 QOM doub 335 n y C25 N24 QOM sing 336 n n C02 C07 QOM sing 337 n n C02 C03 QOM doub 338 n n C27 C26 QOM sing 339 n y C07 N06 QOM sing 340 n n N24 C03 QOM sing 341 n n N24 C22 QOM sing 342 n n C03 C04 QOM sing 343 n n N06 C09 QOM sing 344 n n N06 C05 QOM sing 345 n n O23 C22 QOM doub 346 n n C22 N21 QOM sing 347 n n C04 C05 QOM doub 348 n n C04 C19 QOM sing 349 n n C05 N10 QOM sing 350 n n C36 C35 QOM sing 351 n n C36 C37 QOM sing 352 n n N21 C19 QOM sing 353 n n N21 C35 QOM sing 354 n n C19 O20 QOM doub 355 n n N10 C11 QOM sing 356 n n F18 C12 QOM sing 357 n n C35 C37 QOM sing 358 n n C11 C12 QOM doub 359 n y C11 C16 QOM sing 360 n y C12 C13 QOM sing 361 n y C16 C15 QOM doub 362 n y C13 C14 QOM doub 363 n y C15 C14 QOM sing 364 n y C14 I17 QOM sing 365 n n C13 H1 QOM sing 366 n n C15 H2 QOM sing 367 n n C26 H3 QOM sing 368 n n C28 H4 QOM sing 369 n n C01 H5 QOM sing 370 n n C01 H6 QOM sing 371 n n C01 H7 QOM sing 372 n n C09 H9 QOM sing 373 n n C09 H10 QOM sing 374 n n C09 H11 QOM sing 375 n n C16 H12 QOM sing 376 n n C27 H13 QOM sing 377 n n C30 H14 QOM sing 378 n n C34 H15 QOM sing 379 n n C34 H16 QOM sing 380 n n C34 H17 QOM sing 381 n n C35 H18 QOM sing 382 n n C36 H19 QOM sing 383 n n C36 H20 QOM sing 384 n n C37 H21 QOM sing 385 n n C37 H22 QOM sing 386 n n N31 H23 QOM sing 387 n n N10 H8 QOM sing 388 n n # _atom_sites.entry_id 7M0Y _atom_sites.fract_transf_matrix[1][1] 0.008568 _atom_sites.fract_transf_matrix[1][2] 0.004947 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007723 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 801 801 ANP ANP . D 4 MG A 1 802 802 MG MG . E 3 ANP B 1 401 400 ANP ANP . F 4 MG B 1 402 410 MG MG . G 5 SO4 B 1 403 1 SO4 SO4 . H 6 QOM B 1 404 402 QOM QOM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 QOM . . . H 6 68.001 -26.838 8.012 1 82.06 ? C13 QOM 404 B 1 HETATM 2 C C15 QOM . . . H 6 68.242 -24.467 7.972 1 65.29 ? C15 QOM 404 B 1 HETATM 3 C C22 QOM . . . H 6 61.106 -22.598 5.305 1 79.27 ? C22 QOM 404 B 1 HETATM 4 C C26 QOM . . . H 6 61.956 -19.605 4.727 1 59.94 ? C26 QOM 404 B 1 HETATM 5 C C28 QOM . . . H 6 60.672 -18.015 3.526 1 69.87 ? C28 QOM 404 B 1 HETATM 6 C C01 QOM . . . H 6 64.414 -20.648 2.738 1 67.11 ? C01 QOM 404 B 1 HETATM 7 C C02 QOM . . . H 6 64.373 -21.884 3.612 1 71.34 ? C02 QOM 404 B 1 HETATM 8 C C03 QOM . . . H 6 63.291 -22.456 4.399 1 69.88 ? C03 QOM 404 B 1 HETATM 9 C C04 QOM . . . H 6 63.632 -23.628 5.051 1 71.23 ? C04 QOM 404 B 1 HETATM 10 C C05 QOM . . . H 6 64.969 -24.218 4.953 1 65.27 ? C05 QOM 404 B 1 HETATM 11 C C07 QOM . . . H 6 65.586 -22.5 3.579 1 68.65 ? C07 QOM 404 B 1 HETATM 12 C C09 QOM . . . H 6 67.244 -23.976 3.931 1 61.47 ? C09 QOM 404 B 1 HETATM 13 C C11 QOM . . . H 6 66.469 -25.544 6.67 1 68.26 ? C11 QOM 404 B 1 HETATM 14 C C12 QOM . . . H 6 66.911 -26.768 7.132 1 79.01 ? C12 QOM 404 B 1 HETATM 15 C C14 QOM . . . H 6 68.662 -25.691 8.437 1 77.36 ? C14 QOM 404 B 1 HETATM 16 C C16 QOM . . . H 6 67.159 -24.414 7.11 1 67.8 ? C16 QOM 404 B 1 HETATM 17 C C19 QOM . . . H 6 62.644 -24.253 5.832 1 75.11 ? C19 QOM 404 B 1 HETATM 18 C C25 QOM . . . H 6 61.425 -20.683 4.002 1 72.7 ? C25 QOM 404 B 1 HETATM 19 C C27 QOM . . . H 6 61.625 -18.28 4.49 1 65.31 ? C27 QOM 404 B 1 HETATM 20 C C29 QOM . . . H 6 60.087 -19.069 2.818 1 87.01 ? C29 QOM 404 B 1 HETATM 21 C C30 QOM . . . H 6 60.445 -20.411 3.043 1 82.46 ? C30 QOM 404 B 1 HETATM 22 C C32 QOM . . . H 6 57.717 -18.391 2.238 1 92.5 ? C32 QOM 404 B 1 HETATM 23 C C34 QOM . . . H 6 56.663 -18.006 1.187 1 78.62 ? C34 QOM 404 B 1 HETATM 24 C C35 QOM . . . H 6 60.444 -24.397 6.715 1 88.63 ? C35 QOM 404 B 1 HETATM 25 C C36 QOM . . . H 6 59.036 -24.782 6.146 1 83.87 ? C36 QOM 404 B 1 HETATM 26 C C37 QOM . . . H 6 60.008 -25.865 6.371 1 83.98 ? C37 QOM 404 B 1 HETATM 27 F F18 QOM . . . H 6 66.268 -27.889 6.715 1 73.11 ? F18 QOM 404 B 1 HETATM 28 I I17 QOM . . . H 6 70.3 -25.742 9.742 1 92.22 ? I17 QOM 404 B 1 HETATM 29 N N06 QOM . . . H 6 65.87 -23.596 4.195 1 61.24 ? N06 QOM 404 B 1 HETATM 30 N N10 QOM . . . H 6 65.328 -25.471 5.687 1 64.93 ? N10 QOM 404 B 1 HETATM 31 N N21 QOM . . . H 6 61.445 -23.718 5.93 1 80.21 ? N21 QOM 404 B 1 HETATM 32 N N24 QOM . . . H 6 61.972 -21.96 4.51 1 71.02 ? N24 QOM 404 B 1 HETATM 33 N N31 QOM . . . H 6 59.08 -18.708 1.811 1 89.18 ? N31 QOM 404 B 1 HETATM 34 O O08 QOM . . . H 6 66.592 -21.933 2.811 1 70.01 ? O08 QOM 404 B 1 HETATM 35 O O20 QOM . . . H 6 62.87 -25.426 6.533 1 81.09 ? O20 QOM 404 B 1 HETATM 36 O O23 QOM . . . H 6 60.001 -22.215 5.465 1 87.07 ? O23 QOM 404 B 1 HETATM 37 O O33 QOM . . . H 6 57.414 -18.437 3.383 1 96.76 ? O33 QOM 404 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 37 #