data_7M0Z # _model_server_result.job_id zbAR7h3w3NlzEvAdG_wXAQ _model_server_result.datetime_utc '2024-11-05 10:57:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m0z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 7M0Z # _exptl.entry_id 7M0Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7M0Z _cell.length_a 116.784 _cell.length_b 116.784 _cell.length_c 129.256 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M0Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 141 A ASN 581 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc2 A OD2 ASP 154 A ASP 594 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc3 C O1B ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc4 C O1A ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc5 B OD1 ASN 199 B ASN 195 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc6 B OD2 ASP 212 B ASP 208 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc7 F O2B ANP . B ANP 401 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc8 F O2A ANP . B ANP 401 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7M0Z _atom_sites.fract_transf_matrix[1][1] 0.008563 _atom_sites.fract_transf_matrix[1][2] 0.004944 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 801 801 ANP ANP . D 4 MG A 1 802 802 MG MG . E 5 SO4 A 1 803 1 SO4 SO4 . F 3 ANP B 1 401 401 ANP ANP . G 6 CHU B 1 402 403 CHU CHU . H 4 MG B 1 403 802 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 3 55.618 -24.084 9.339 0.78 127.36 ? PG ANP 401 B 1 HETATM 2 O O1G ANP . . . F 3 55.515 -25.403 8.421 0.78 127.29 ? O1G ANP 401 B 1 HETATM 3 O O2G ANP . . . F 3 54.528 -23.167 8.986 0.78 135.87 ? O2G ANP 401 B 1 HETATM 4 O O3G ANP . . . F 3 57.012 -23.353 9.089 0.78 112.4 ? O3G ANP 401 B 1 HETATM 5 P PB ANP . . . F 3 56.752 -25.474 11.471 0.78 122.53 ? PB ANP 401 B 1 HETATM 6 O O1B ANP . . . F 3 56.632 -25.796 12.908 0.78 106.95 ? O1B ANP 401 B 1 HETATM 7 O O2B ANP . . . F 3 58.148 -24.691 11.219 0.78 107.18 ? O2B ANP 401 B 1 HETATM 8 N N3B ANP . . . F 3 55.475 -24.497 11.009 0.78 114.73 ? N3B ANP 401 B 1 HETATM 9 P PA ANP . . . F 3 58.022 -27.692 10.434 0.78 107.54 ? PA ANP 401 B 1 HETATM 10 O O1A ANP . . . F 3 57.876 -28.707 9.377 0.78 109.49 -1 O1A ANP 401 B 1 HETATM 11 O O2A ANP . . . F 3 59.213 -26.709 9.994 0.78 110.84 ? O2A ANP 401 B 1 HETATM 12 O O3A ANP . . . F 3 56.626 -26.851 10.583 0.78 124.76 ? O3A ANP 401 B 1 HETATM 13 O O5' ANP . . . F 3 58.413 -28.433 11.806 0.78 102.57 ? O5' ANP 401 B 1 HETATM 14 C C5' ANP . . . F 3 57.248 -29.016 12.42 0.78 101.94 ? C5' ANP 401 B 1 HETATM 15 C C4' ANP . . . F 3 57.588 -29.375 13.878 0.78 103.55 ? C4' ANP 401 B 1 HETATM 16 O O4' ANP . . . F 3 58.731 -30.277 13.908 0.78 103.75 ? O4' ANP 401 B 1 HETATM 17 C C3' ANP . . . F 3 57.97 -28.109 14.691 0.78 104.62 ? C3' ANP 401 B 1 HETATM 18 O O3' ANP . . . F 3 56.94 -27.739 15.618 0.78 108.3 ? O3' ANP 401 B 1 HETATM 19 C C2' ANP . . . F 3 59.293 -28.446 15.397 0.78 103.97 ? C2' ANP 401 B 1 HETATM 20 O O2' ANP . . . F 3 59.205 -28.288 16.813 0.78 106.24 ? O2' ANP 401 B 1 HETATM 21 C C1' ANP . . . F 3 59.623 -29.893 14.999 0.78 102.74 ? C1' ANP 401 B 1 HETATM 22 N N9 ANP . . . F 3 61.024 -29.967 14.564 0.78 99.59 ? N9 ANP 401 B 1 HETATM 23 C C8 ANP . . . F 3 61.538 -29.511 13.374 0.78 99.41 ? C8 ANP 401 B 1 HETATM 24 N N7 ANP . . . F 3 62.818 -29.736 13.318 0.78 97.79 ? N7 ANP 401 B 1 HETATM 25 C C5 ANP . . . F 3 63.218 -30.35 14.461 0.78 99.36 ? C5 ANP 401 B 1 HETATM 26 C C6 ANP . . . F 3 64.46 -30.833 14.969 0.78 97.51 ? C6 ANP 401 B 1 HETATM 27 N N6 ANP . . . F 3 65.615 -30.712 14.221 0.78 96.36 ? N6 ANP 401 B 1 HETATM 28 N N1 ANP . . . F 3 64.485 -31.41 16.192 0.78 97.83 ? N1 ANP 401 B 1 HETATM 29 C C2 ANP . . . F 3 63.375 -31.538 16.937 0.78 98.78 ? C2 ANP 401 B 1 HETATM 30 N N3 ANP . . . F 3 62.187 -31.1 16.501 0.78 99.14 ? N3 ANP 401 B 1 HETATM 31 C C4 ANP . . . F 3 62.064 -30.507 15.282 0.78 99.39 ? C4 ANP 401 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #