data_7M0Z # _model_server_result.job_id XsedE4o5C1l9l0jb_iqQBA _model_server_result.datetime_utc '2024-11-05 10:50:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m0z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 7M0Z # _exptl.entry_id 7M0Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7M0Z _cell.length_a 116.784 _cell.length_b 116.784 _cell.length_c 129.256 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M0Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 141 A ASN 581 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc2 A OD2 ASP 154 A ASP 594 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc3 C O1B ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc4 C O1A ANP . A ANP 801 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc5 B OD1 ASN 199 B ASN 195 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc6 B OD2 ASP 212 B ASP 208 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc7 F O2B ANP . B ANP 401 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc8 F O2A ANP . B ANP 401 1_555 H MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7M0Z _atom_sites.fract_transf_matrix[1][1] 0.008563 _atom_sites.fract_transf_matrix[1][2] 0.004944 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007737 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 801 801 ANP ANP . D 4 MG A 1 802 802 MG MG . E 5 SO4 A 1 803 1 SO4 SO4 . F 3 ANP B 1 401 401 ANP ANP . G 6 CHU B 1 402 403 CHU CHU . H 4 MG B 1 403 802 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 42.827 -28.522 -3.069 1 83.82 ? PG ANP 801 A 1 HETATM 2 O O1G ANP . . . C 3 42.657 -29.243 -1.768 1 88.17 ? O1G ANP 801 A 1 HETATM 3 O O2G ANP . . . C 3 42.078 -29.313 -4.21 1 75.59 ? O2G ANP 801 A 1 HETATM 4 O O3G ANP . . . C 3 42.206 -27.075 -2.941 1 79.67 ? O3G ANP 801 A 1 HETATM 5 P PB ANP . . . C 3 44.993 -29.761 -4.298 1 71.69 ? PB ANP 801 A 1 HETATM 6 O O1B ANP . . . C 3 43.999 -30.097 -5.36 1 69.78 ? O1B ANP 801 A 1 HETATM 7 O O2B ANP . . . C 3 46.375 -29.467 -4.955 1 71.59 ? O2B ANP 801 A 1 HETATM 8 N N3B ANP . . . C 3 44.474 -28.404 -3.455 1 81.64 ? N3B ANP 801 A 1 HETATM 9 P PA ANP . . . C 3 44.304 -32.306 -3.492 1 83.47 ? PA ANP 801 A 1 HETATM 10 O O1A ANP . . . C 3 42.995 -32.06 -4.141 1 81.56 -1 O1A ANP 801 A 1 HETATM 11 O O2A ANP . . . C 3 44.174 -32.927 -2.099 1 79.4 ? O2A ANP 801 A 1 HETATM 12 O O3A ANP . . . C 3 45.14 -30.964 -3.315 1 87.86 ? O3A ANP 801 A 1 HETATM 13 O O5' ANP . . . C 3 45.177 -33.222 -4.44 1 84.03 ? O5' ANP 801 A 1 HETATM 14 C C5' ANP . . . C 3 46.444 -33.761 -4.003 1 84.85 ? C5' ANP 801 A 1 HETATM 15 C C4' ANP . . . C 3 47.028 -34.615 -5.102 1 84.03 ? C4' ANP 801 A 1 HETATM 16 O O4' ANP . . . C 3 46.048 -35.583 -5.535 1 81.22 ? O4' ANP 801 A 1 HETATM 17 C C3' ANP . . . C 3 47.473 -33.866 -6.357 1 86.78 ? C3' ANP 801 A 1 HETATM 18 O O3' ANP . . . C 3 48.654 -34.44 -6.906 1 94.51 ? O3' ANP 801 A 1 HETATM 19 C C2' ANP . . . C 3 46.274 -34.026 -7.294 1 81.77 ? C2' ANP 801 A 1 HETATM 20 O O2' ANP . . . C 3 46.667 -33.986 -8.662 1 91.47 ? O2' ANP 801 A 1 HETATM 21 C C1' ANP . . . C 3 45.768 -35.417 -6.912 1 82.97 ? C1' ANP 801 A 1 HETATM 22 N N9 ANP . . . C 3 44.336 -35.602 -7.111 1 87.44 ? N9 ANP 801 A 1 HETATM 23 C C8 ANP . . . C 3 43.32 -34.894 -6.523 1 84.32 ? C8 ANP 801 A 1 HETATM 24 N N7 ANP . . . C 3 42.119 -35.279 -6.883 1 85.53 ? N7 ANP 801 A 1 HETATM 25 C C5 ANP . . . C 3 42.363 -36.317 -7.77 1 87.43 ? C5 ANP 801 A 1 HETATM 26 C C6 ANP . . . C 3 41.502 -37.153 -8.509 1 85.04 ? C6 ANP 801 A 1 HETATM 27 N N6 ANP . . . C 3 40.17 -37.069 -8.47 1 87.79 ? N6 ANP 801 A 1 HETATM 28 N N1 ANP . . . C 3 42.068 -38.091 -9.302 1 88.13 ? N1 ANP 801 A 1 HETATM 29 C C2 ANP . . . C 3 43.401 -38.178 -9.346 1 85.67 ? C2 ANP 801 A 1 HETATM 30 N N3 ANP . . . C 3 44.31 -37.448 -8.694 1 82.18 ? N3 ANP 801 A 1 HETATM 31 C C4 ANP . . . C 3 43.721 -36.529 -7.919 1 88.01 ? C4 ANP 801 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #