data_7M17
#
_model_server_result.job_id            A7gfQ7neSqORIzOHyByczA 
_model_server_result.datetime_utc      '2024-11-04 22:48:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7m17 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":902}' 
#
_entry.id    7M17 
#
_exptl.entry_id    7M17 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              469.441 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '7-{[(2S)-2-butyl-6,7-dichloro-2-cyclopentyl-1-oxo-2,3-dihydro-1H-inden-5-yl]oxy}heptanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7M17 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7M17 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             N 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 310 A CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 A SG CYS 57 A CYS 57 1_555 A SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 A SG CYS 113 A CYS 113 1_555 A SG CYS 295 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 54 B CYS 54 1_555 B SG CYS 310 B CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 B SG CYS 57 B CYS 57 1_555 B SG CYS 65 B CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 B SG CYS 113 B CYS 113 1_555 B SG CYS 295 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 C SG CYS 54 C CYS 54 1_555 C SG CYS 310 C CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf8 C SG CYS 57 C CYS 57 1_555 C SG CYS 65 C CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf9 C SG CYS 113 C CYS 113 1_555 C SG CYS 295 C CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 D SG CYS 54 D CYS 54 1_555 D SG CYS 310 D CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf11 D SG CYS 57 D CYS 57 1_555 D SG CYS 65 D CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 D SG CYS 113 D CYS 113 1_555 D SG CYS 295 D CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf13 E SG CYS 54 E CYS 54 1_555 E SG CYS 310 E CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf14 E SG CYS 57 E CYS 57 1_555 E SG CYS 65 E CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf15 E SG CYS 113 E CYS 113 1_555 E SG CYS 295 E CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf16 F SG CYS 54 F CYS 54 1_555 F SG CYS 310 F CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf17 F SG CYS 57 F CYS 57 1_555 F SG CYS 65 F CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf18 F SG CYS 113 F CYS 113 1_555 F SG CYS 295 F CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C25 H34 Cl2 O4' 
_chem_comp.formula_weight    469.441 
_chem_comp.id                YNJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '7-{[(2S)-2-butyl-6,7-dichloro-2-cyclopentyl-1-oxo-2,3-dihydro-1H-inden-5-yl]oxy}heptanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7M17 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 PEE A 1 901 1 PEE DOP . 
H 2 PEE A 1 902 3 PEE DOP . 
I 2 PEE A 1 903 2 PEE DOP . 
J 2 PEE B 1 901 2 PEE DOP . 
K 2 PEE B 1 902 1 PEE DOP . 
L 2 PEE B 1 903 3 PEE DOP . 
M 2 PEE C 1 901 2 PEE DOP . 
N 3 YNJ C 1 902 1001 YNJ SM7 . 
O 2 PEE C 1 903 1 PEE DOP . 
P 2 PEE C 1 904 3 PEE DOP . 
Q 2 PEE D 1 901 2 PEE DOP . 
R 2 PEE D 1 902 1 PEE DOP . 
S 2 PEE D 1 903 3 PEE DOP . 
T 2 PEE E 1 901 2 PEE DOP . 
U 2 PEE E 1 902 1 PEE DOP . 
V 2 PEE E 1 903 3 PEE DOP . 
W 2 PEE F 1 901 2 PEE DOP . 
X 2 PEE F 1 902 1 PEE DOP . 
Y 2 PEE F 1 903 3 PEE DOP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 YNJ . . . N 3 206.612 205.351 273.821 1 85.77 ? C11 YNJ 902 C 1 
HETATM 2 C C12 YNJ . . . N 3 205.882 205.441 275.001 1 85.77 ? C12 YNJ 902 C 1 
HETATM 3 C C13 YNJ . . . N 3 206.208 205.298 276.424 1 85.77 ? C13 YNJ 902 C 1 
HETATM 4 C C18 YNJ . . . N 3 202.801 205.179 271.098 1 85.77 ? C18 YNJ 902 C 1 
HETATM 5 C C19 YNJ . . . N 3 203.307 203.711 271.024 1 85.77 ? C19 YNJ 902 C 1 
HETATM 6 C C20 YNJ . . . N 3 204.06 203.408 269.71 1 85.77 ? C20 YNJ 902 C 1 
HETATM 7 C C21 YNJ . . . N 3 203.415 204.085 268.469 1 85.77 ? C21 YNJ 902 C 1 
HETATM 8 C C22 YNJ . . . N 3 204.476 204.758 267.566 1 85.77 ? C22 YNJ 902 C 1 
HETATM 9 C C23 YNJ . . . N 3 203.995 204.919 266.123 1 85.77 ? C23 YNJ 902 C 1 
HETATM 10 C C24 YNJ . . . N 3 204.82 204.051 265.147 1 85.77 ? C24 YNJ 902 C 1 
HETATM 11 C C29 YNJ . . . N 3 205.278 201.499 277.818 1 85.77 ? C29 YNJ 902 C 1 
HETATM 12 C C01 YNJ . . . N 3 204.563 210.122 278.146 1 85.77 ? C01 YNJ 902 C 1 
HETATM 13 C C02 YNJ . . . N 3 204.855 208.796 278.869 1 85.77 ? C02 YNJ 902 C 1 
HETATM 14 C C03 YNJ . . . N 3 205.538 207.771 277.946 1 85.77 ? C03 YNJ 902 C 1 
HETATM 15 C C04 YNJ . . . N 3 205.443 206.328 278.497 1 85.77 ? C04 YNJ 902 C 1 
HETATM 16 C C05 YNJ . . . N 3 205.151 205.296 277.363 1 85.77 ? C05 YNJ 902 C 1 
HETATM 17 C C06 YNJ . . . N 3 203.937 205.76 276.539 1 85.77 ? C06 YNJ 902 C 1 
HETATM 18 C C07 YNJ . . . N 3 204.475 205.732 274.954 1 85.77 ? C07 YNJ 902 C 1 
HETATM 19 C C08 YNJ . . . N 3 203.848 205.925 273.739 1 85.77 ? C08 YNJ 902 C 1 
HETATM 20 C C09 YNJ . . . N 3 204.585 205.834 272.548 1 85.77 ? C09 YNJ 902 C 1 
HETATM 21 C C10 YNJ . . . N 3 205.973 205.546 272.591 1 85.77 ? C10 YNJ 902 C 1 
HETATM 22 C C27 YNJ . . . N 3 204.844 203.876 277.966 1 85.77 ? C27 YNJ 902 C 1 
HETATM 23 C C28 YNJ . . . N 3 204.815 202.881 277.027 1 85.77 ? C28 YNJ 902 C 1 
HETATM 24 C C30 YNJ . . . N 3 206.242 201.885 278.697 1 85.77 ? C30 YNJ 902 C 1 
HETATM 25 C C31 YNJ . . . N 3 205.909 203.405 279.056 1 85.77 ? C31 YNJ 902 C 1 
HETATM 26 O O14 YNJ . . . N 3 207.332 205.207 276.774 1 85.77 ? O14 YNJ 902 C 1 
HETATM 27 O O17 YNJ . . . N 3 203.936 206.03 271.289 1 85.77 ? O17 YNJ 902 C 1 
HETATM 28 O O25 YNJ . . . N 3 205.779 204.562 264.505 1 85.77 ? O25 YNJ 902 C 1 
HETATM 29 O O26 YNJ . . . N 3 204.537 202.83 264.994 1 85.77 ? O26 YNJ 902 C 1 
HETATM 30 CL CL15 YNJ . . . N 3 208.358 204.991 273.854 1 85.77 ? CL15 YNJ 902 C 1 
HETATM 31 CL CL16 YNJ . . . N 3 206.91 205.432 271.078 1 85.77 ? CL16 YNJ 902 C 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           241 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#