data_7M18
#
_model_server_result.job_id            MO0X5dIIR8gWT-qWk1fIYw 
_model_server_result.datetime_utc      '2025-03-18 13:09:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7m18 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FA","auth_seq_id":501}' 
#
_entry.id    7M18 
#
_exptl.entry_id    7M18 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              655.178 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Cryptophycin 1' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7M18 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7M18 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 Q N N 
? 3 T N N 
? 3 W N N 
? 3 Z N N 
? 3 CA N N 
? 3 FA N N 
? 3 IA N N 
? 3 LA N N 
#
_chem_comp.formula           'C35 H43 Cl N2 O8' 
_chem_comp.formula_weight    655.178 
_chem_comp.id                YNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Cryptophycin 1' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (3S,6R,10S,13E,16S)-10-[(3-chloro-4-methoxyphenyl)methyl]-6-methyl-3-(2-methylpropyl)-16-{(1S)-1-[(2R,3R)-3-phenyloxiran-2-yl]ethyl}-1,4-dioxa-8,11-diazacyclohexadec-13-ene-2,5,9,12-tetrone 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 C24 YNP doub 469 n y 
C25 C26 YNP sing 470 n y 
C24 C23 YNP sing 471 n y 
C26 C27 YNP doub 472 n y 
C23 C22 YNP doub 473 n y 
C27 C22 YNP sing 474 n y 
C22 C21 YNP sing 475 n n 
C17 C15 YNP sing 476 n n 
C16 C15 YNP sing 477 n n 
C21 O7 YNP sing 478 n n 
C21 C20 YNP sing 479 n n 
C15 C14 YNP sing 480 n n 
O7 C20 YNP sing 481 n n 
C20 C18 YNP sing 482 n n 
C14 C12 YNP sing 483 n n 
O4 C11 YNP doub 484 n n 
C12 C11 YNP sing 485 n n 
C12 O5 YNP sing 486 n n 
C11 O3 YNP sing 487 n n 
C18 C10 YNP sing 488 n n 
C18 C19 YNP sing 489 n n 
O3 C10 YNP sing 490 n n 
C10 C9 YNP sing 491 n n 
C49 C2 YNP sing 492 n n 
O5 C13 YNP sing 493 n n 
C13 C2 YNP sing 494 n n 
C13 O6 YNP doub 495 n n 
C2 C3 YNP sing 496 n n 
C9 C8 YNP sing 497 n n 
C3 N1 YNP sing 498 n n 
C8 C7 YNP doub 499 e n 
C7 C6 YNP sing 500 n n 
N1 C4 YNP sing 501 n n 
C6 N2 YNP sing 502 n n 
C6 O2 YNP doub 503 n n 
N2 C5 YNP sing 504 n n 
C4 C5 YNP sing 505 n n 
C4 O1 YNP doub 506 n n 
C5 C28 YNP sing 507 n n 
C34 C33 YNP doub 508 n y 
C34 C29 YNP sing 509 n y 
C28 C29 YNP sing 510 n n 
C33 C32 YNP sing 511 n y 
C29 C30 YNP doub 512 n y 
C32 O8 YNP sing 513 n n 
C32 C31 YNP doub 514 n y 
C30 C31 YNP sing 515 n y 
O8 C35 YNP sing 516 n n 
C31 CL1 YNP sing 517 n n 
N1 H1 YNP sing 518 n n 
C2 H2 YNP sing 519 n n 
C5 H3 YNP sing 520 n n 
N2 H4 YNP sing 521 n n 
C7 H5 YNP sing 522 n n 
C8 H6 YNP sing 523 n n 
C10 H7 YNP sing 524 n n 
C12 H8 YNP sing 525 n n 
C14 H9 YNP sing 526 n n 
C14 H10 YNP sing 527 n n 
C15 H11 YNP sing 528 n n 
C16 H12 YNP sing 529 n n 
C16 H13 YNP sing 530 n n 
C16 H14 YNP sing 531 n n 
C17 H15 YNP sing 532 n n 
C17 H16 YNP sing 533 n n 
C17 H17 YNP sing 534 n n 
C18 H18 YNP sing 535 n n 
C19 H19 YNP sing 536 n n 
C19 H20 YNP sing 537 n n 
C19 H21 YNP sing 538 n n 
C20 H22 YNP sing 539 n n 
C21 H23 YNP sing 540 n n 
C23 H24 YNP sing 541 n n 
C24 H25 YNP sing 542 n n 
C25 H26 YNP sing 543 n n 
C26 H27 YNP sing 544 n n 
C27 H28 YNP sing 545 n n 
C28 H29 YNP sing 546 n n 
C28 H30 YNP sing 547 n n 
C3 H31 YNP sing 548 n n 
C3 H32 YNP sing 549 n n 
C30 H33 YNP sing 550 n n 
C33 H34 YNP sing 551 n n 
C34 H35 YNP sing 552 n n 
C35 H36 YNP sing 553 n n 
C35 H37 YNP sing 554 n n 
C35 H38 YNP sing 555 n n 
C49 H39 YNP sing 556 n n 
C49 H40 YNP sing 557 n n 
C49 H41 YNP sing 558 n n 
C9 H42 YNP sing 559 n n 
C9 H43 YNP sing 560 n n 
#
_atom_sites.entry_id                     7M18 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 3 YNP B 1 501 502 YNP CP1 . 
R 4 GDP B 1 502 601 GDP GDP . 
S 5 GTP A 1 501 501 GTP GTP . 
T 3 YNP D 1 501 502 YNP CP1 . 
U 4 GDP D 1 502 601 GDP GDP . 
V 5 GTP C 1 501 501 GTP GTP . 
W 3 YNP F 1 501 502 YNP CP1 . 
X 4 GDP F 1 502 601 GDP GDP . 
Y 5 GTP E 1 501 501 GTP GTP . 
Z 3 YNP H 1 501 502 YNP CP1 . 
AA 4 GDP H 1 502 601 GDP GDP . 
BA 5 GTP G 1 501 501 GTP GTP . 
CA 3 YNP J 1 501 502 YNP CP1 . 
DA 4 GDP J 1 502 601 GDP GDP . 
EA 5 GTP I 1 501 501 GTP GTP . 
FA 3 YNP L 1 501 502 YNP CP1 . 
GA 4 GDP L 1 502 601 GDP GDP . 
HA 5 GTP K 1 501 501 GTP GTP . 
IA 3 YNP N 1 501 502 YNP CP1 . 
JA 4 GDP N 1 502 601 GDP GDP . 
KA 5 GTP M 1 501 501 GTP GTP . 
LA 3 YNP P 1 501 502 YNP CP1 . 
MA 4 GDP P 1 502 601 GDP GDP . 
NA 5 GTP O 1 501 501 GTP GTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 YNP . . . FA 3 230.084 397.277 306.223 1 126.28 ? N1 YNP 501 L 1 
HETATM 2 C C2 YNP . . . FA 3 230.54 395.961 304.204 1 126.28 ? C2 YNP 501 L 1 
HETATM 3 C C4 YNP . . . FA 3 230.662 396.885 307.5 1 126.28 ? C4 YNP 501 L 1 
HETATM 4 C C5 YNP . . . FA 3 230.947 395.42 307.851 1 126.28 ? C5 YNP 501 L 1 
HETATM 5 C C6 YNP . . . FA 3 233.665 394.679 307.214 1 126.28 ? C6 YNP 501 L 1 
HETATM 6 O O2 YNP . . . FA 3 234.581 395.203 308.125 1 126.28 ? O2 YNP 501 L 1 
HETATM 7 N N2 YNP . . . FA 3 232.268 395.051 307.366 1 126.28 ? N2 YNP 501 L 1 
HETATM 8 O O4 YNP . . . FA 3 235.167 395.503 301.605 1 126.28 ? O4 YNP 501 L 1 
HETATM 9 C C7 YNP . . . FA 3 234.17 393.705 306.152 1 126.28 ? C7 YNP 501 L 1 
HETATM 10 O O6 YNP . . . FA 3 232.849 396.451 304.303 1 126.28 ? O6 YNP 501 L 1 
HETATM 11 C C8 YNP . . . FA 3 235.254 393.96 305.446 1 126.28 ? C8 YNP 501 L 1 
HETATM 12 C C10 YNP . . . FA 3 236.071 393.411 303.026 1 126.28 ? C10 YNP 501 L 1 
HETATM 13 C C11 YNP . . . FA 3 234.409 394.636 301.894 1 126.28 ? C11 YNP 501 L 1 
HETATM 14 C C12 YNP . . . FA 3 232.899 394.835 301.808 1 126.28 ? C12 YNP 501 L 1 
HETATM 15 C C13 YNP . . . FA 3 232.017 395.719 303.874 1 126.28 ? C13 YNP 501 L 1 
HETATM 16 C C14 YNP . . . FA 3 232.451 396.154 301.176 1 126.28 ? C14 YNP 501 L 1 
HETATM 17 C C15 YNP . . . FA 3 231.685 395.905 299.875 1 126.28 ? C15 YNP 501 L 1 
HETATM 18 C C16 YNP . . . FA 3 231.174 394.467 299.763 1 126.28 ? C16 YNP 501 L 1 
HETATM 19 C C17 YNP . . . FA 3 232.473 396.344 298.643 1 126.28 ? C17 YNP 501 L 1 
HETATM 20 C C18 YNP . . . FA 3 237 392.413 302.318 1 126.28 ? C18 YNP 501 L 1 
HETATM 21 C C19 YNP . . . FA 3 238.097 391.857 303.217 1 126.28 ? C19 YNP 501 L 1 
HETATM 22 C C20 YNP . . . FA 3 237.586 392.951 301.018 1 126.28 ? C20 YNP 501 L 1 
HETATM 23 C C21 YNP . . . FA 3 236.553 392.724 299.836 1 126.28 ? C21 YNP 501 L 1 
HETATM 24 C C22 YNP . . . FA 3 235.998 393.028 298.449 1 126.28 ? C22 YNP 501 L 1 
HETATM 25 C C23 YNP . . . FA 3 235.756 392.003 297.551 1 126.28 ? C23 YNP 501 L 1 
HETATM 26 C C24 YNP . . . FA 3 235.254 392.306 296.286 1 126.28 ? C24 YNP 501 L 1 
HETATM 27 C C25 YNP . . . FA 3 235.003 393.636 295.94 1 126.28 ? C25 YNP 501 L 1 
HETATM 28 C C26 YNP . . . FA 3 235.254 394.65 296.853 1 126.28 ? C26 YNP 501 L 1 
HETATM 29 C C27 YNP . . . FA 3 235.749 394.336 298.098 1 126.28 ? C27 YNP 501 L 1 
HETATM 30 C C28 YNP . . . FA 3 230.868 395.183 309.365 1 126.28 ? C28 YNP 501 L 1 
HETATM 31 C C29 YNP . . . FA 3 231.163 393.738 309.787 1 126.28 ? C29 YNP 501 L 1 
HETATM 32 C C3 YNP . . . FA 3 230.287 397.355 304.783 1 126.28 ? C3 YNP 501 L 1 
HETATM 33 C C30 YNP . . . FA 3 232.063 393.455 310.822 1 126.28 ? C30 YNP 501 L 1 
HETATM 34 C C31 YNP . . . FA 3 232.319 392.137 311.198 1 126.28 ? C31 YNP 501 L 1 
HETATM 35 C C32 YNP . . . FA 3 231.682 391.094 310.551 1 126.28 ? C32 YNP 501 L 1 
HETATM 36 C C33 YNP . . . FA 3 230.798 391.357 309.531 1 126.28 ? C33 YNP 501 L 1 
HETATM 37 C C34 YNP . . . FA 3 230.541 392.663 309.155 1 126.28 ? C34 YNP 501 L 1 
HETATM 38 C C35 YNP . . . FA 3 232.195 389.595 312.287 1 126.28 ? C35 YNP 501 L 1 
HETATM 39 C C49 YNP . . . FA 3 229.59 395.594 303.062 1 126.28 ? C49 YNP 501 L 1 
HETATM 40 C C9 YNP . . . FA 3 235.718 392.919 304.425 1 126.28 ? C9 YNP 501 L 1 
HETATM 41 O O1 YNP . . . FA 3 230.963 397.885 308.436 1 126.28 ? O1 YNP 501 L 1 
HETATM 42 O O3 YNP . . . FA 3 234.857 393.385 302.33 1 126.28 ? O3 YNP 501 L 1 
HETATM 43 O O5 YNP . . . FA 3 232.365 394.608 303.091 1 126.28 ? O5 YNP 501 L 1 
HETATM 44 O O7 YNP . . . FA 3 237.683 391.973 300.105 1 126.28 ? O7 YNP 501 L 1 
HETATM 45 O O8 YNP . . . FA 3 231.938 389.764 310.921 1 126.28 ? O8 YNP 501 L 1 
HETATM 46 CL CL1 YNP . . . FA 3 233.47 391.794 312.52 1 126.28 ? CL1 YNP 501 L 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    124 
_model_server_stats.query_time_ms           860 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           46 
#