data_7M1I # _model_server_result.job_id IVkT4cgFBa1vlsA5USaZ6Q _model_server_result.datetime_utc '2024-10-10 10:23:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7M1I # _exptl.entry_id 7M1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M1I _cell.length_a 58.84 _cell.length_b 67.31 _cell.length_c 68.03 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,K 1 1 B,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 I FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 155 n n CHA C4D HEM doub 156 n n CHA HHA HEM sing 157 n n CHB C4A HEM sing 158 n n CHB C1B HEM doub 159 n n CHB HHB HEM sing 160 n n CHC C4B HEM sing 161 n n CHC C1C HEM doub 162 n n CHC HHC HEM sing 163 n n CHD C4C HEM doub 164 n n CHD C1D HEM sing 165 n n CHD HHD HEM sing 166 n n C1A C2A HEM doub 167 n y C1A NA HEM sing 168 n y C2A C3A HEM sing 169 n y C2A CAA HEM sing 170 n n C3A C4A HEM doub 171 n y C3A CMA HEM sing 172 n n C4A NA HEM sing 173 n y CMA HMA HEM sing 174 n n CMA HMAA HEM sing 175 n n CMA HMAB HEM sing 176 n n CAA CBA HEM sing 177 n n CAA HAA HEM sing 178 n n CAA HAAA HEM sing 179 n n CBA CGA HEM sing 180 n n CBA HBA HEM sing 181 n n CBA HBAA HEM sing 182 n n CGA O1A HEM doub 183 n n CGA O2A HEM sing 184 n n C1B C2B HEM sing 185 n n C1B NB HEM sing 186 n n C2B C3B HEM doub 187 n n C2B CMB HEM sing 188 n n C3B C4B HEM sing 189 n n C3B CAB HEM sing 190 n n C4B NB HEM doub 191 n n CMB HMB HEM sing 192 n n CMB HMBA HEM sing 193 n n CMB HMBB HEM sing 194 n n CAB CBB HEM doub 195 n n CAB HAB HEM sing 196 n n CBB HBB HEM sing 197 n n CBB HBBA HEM sing 198 n n C1C C2C HEM sing 199 n y C1C NC HEM sing 200 n y C2C C3C HEM doub 201 n y C2C CMC HEM sing 202 n n C3C C4C HEM sing 203 n y C3C CAC HEM sing 204 n n C4C NC HEM sing 205 n y CMC HMC HEM sing 206 n n CMC HMCA HEM sing 207 n n CMC HMCB HEM sing 208 n n CAC CBC HEM doub 209 n n CAC HAC HEM sing 210 n n CBC HBC HEM sing 211 n n CBC HBCA HEM sing 212 n n C1D C2D HEM sing 213 n n C1D ND HEM doub 214 n n C2D C3D HEM doub 215 n n C2D CMD HEM sing 216 n n C3D C4D HEM sing 217 n n C3D CAD HEM sing 218 n n C4D ND HEM sing 219 n n CMD HMD HEM sing 220 n n CMD HMDA HEM sing 221 n n CMD HMDB HEM sing 222 n n CAD CBD HEM sing 223 n n CAD HAD HEM sing 224 n n CAD HADA HEM sing 225 n n CBD CGD HEM sing 226 n n CBD HBD HEM sing 227 n n CBD HBDA HEM sing 228 n n CGD O1D HEM doub 229 n n CGD O2D HEM sing 230 n n O2A H2A HEM sing 231 n n O2D H2D HEM sing 232 n n FE NA HEM sing 233 n n FE NB HEM sing 234 n n FE NC HEM sing 235 n n FE ND HEM sing 236 n n # _atom_sites.entry_id 7M1I _atom_sites.fract_transf_matrix[1][1] 0.016995 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 139 HEM HEM . D 3 DUB A 1 202 201 DUB DUB . E 4 GOL A 1 203 301 GOL GOL . F 4 GOL A 1 204 401 GOL GOL . G 5 SO4 A 1 205 1 SO4 SO4 . H 5 SO4 A 1 206 2 SO4 SO4 . I 2 HEM B 1 201 139 HEM HEM . J 3 DUB B 1 202 201 DUB DUB . K 6 HOH A 1 301 1 HOH HOH . K 6 HOH A 2 302 126 HOH HOH . K 6 HOH A 3 303 141 HOH HOH . K 6 HOH A 4 304 109 HOH HOH . K 6 HOH A 5 305 121 HOH HOH . K 6 HOH A 6 306 119 HOH HOH . K 6 HOH A 7 307 111 HOH HOH . K 6 HOH A 8 308 67 HOH HOH . K 6 HOH A 9 309 122 HOH HOH . K 6 HOH A 10 310 69 HOH HOH . K 6 HOH A 11 311 86 HOH HOH . K 6 HOH A 12 312 10 HOH HOH . K 6 HOH A 13 313 118 HOH HOH . K 6 HOH A 14 314 91 HOH HOH . K 6 HOH A 15 315 21 HOH HOH . K 6 HOH A 16 316 7 HOH HOH . K 6 HOH A 17 317 33 HOH HOH . K 6 HOH A 18 318 22 HOH HOH . K 6 HOH A 19 319 12 HOH HOH . K 6 HOH A 20 320 13 HOH HOH . K 6 HOH A 21 321 29 HOH HOH . K 6 HOH A 22 322 9 HOH HOH . K 6 HOH A 23 323 37 HOH HOH . K 6 HOH A 24 324 52 HOH HOH . K 6 HOH A 25 325 82 HOH HOH . K 6 HOH A 26 326 93 HOH HOH . K 6 HOH A 27 327 34 HOH HOH . K 6 HOH A 28 328 47 HOH HOH . K 6 HOH A 29 329 98 HOH HOH . K 6 HOH A 30 330 14 HOH HOH . K 6 HOH A 31 331 16 HOH HOH . K 6 HOH A 32 332 100 HOH HOH . K 6 HOH A 33 333 44 HOH HOH . K 6 HOH A 34 334 35 HOH HOH . K 6 HOH A 35 335 30 HOH HOH . K 6 HOH A 36 336 96 HOH HOH . K 6 HOH A 37 337 123 HOH HOH . K 6 HOH A 38 338 24 HOH HOH . K 6 HOH A 39 339 54 HOH HOH . K 6 HOH A 40 340 55 HOH HOH . K 6 HOH A 41 341 124 HOH HOH . K 6 HOH A 42 342 11 HOH HOH . K 6 HOH A 43 343 42 HOH HOH . K 6 HOH A 44 344 8 HOH HOH . K 6 HOH A 45 345 110 HOH HOH . K 6 HOH A 46 346 53 HOH HOH . K 6 HOH A 47 347 117 HOH HOH . K 6 HOH A 48 348 70 HOH HOH . K 6 HOH A 49 349 77 HOH HOH . K 6 HOH A 50 350 140 HOH HOH . K 6 HOH A 51 351 102 HOH HOH . K 6 HOH A 52 352 95 HOH HOH . K 6 HOH A 53 353 41 HOH HOH . K 6 HOH A 54 354 101 HOH HOH . K 6 HOH A 55 355 99 HOH HOH . K 6 HOH A 56 356 20 HOH HOH . K 6 HOH A 57 357 45 HOH HOH . K 6 HOH A 58 358 81 HOH HOH . K 6 HOH A 59 359 63 HOH HOH . K 6 HOH A 60 360 116 HOH HOH . K 6 HOH A 61 361 120 HOH HOH . K 6 HOH A 62 362 127 HOH HOH . K 6 HOH A 63 363 74 HOH HOH . K 6 HOH A 64 364 48 HOH HOH . K 6 HOH A 65 365 107 HOH HOH . K 6 HOH A 66 366 115 HOH HOH . K 6 HOH A 67 367 39 HOH HOH . K 6 HOH A 68 368 137 HOH HOH . K 6 HOH A 69 369 65 HOH HOH . K 6 HOH A 70 370 18 HOH HOH . L 6 HOH B 1 301 104 HOH HOH . L 6 HOH B 2 302 3 HOH HOH . L 6 HOH B 3 303 134 HOH HOH . L 6 HOH B 4 304 132 HOH HOH . L 6 HOH B 5 305 75 HOH HOH . L 6 HOH B 6 306 79 HOH HOH . L 6 HOH B 7 307 92 HOH HOH . L 6 HOH B 8 308 128 HOH HOH . L 6 HOH B 9 309 50 HOH HOH . L 6 HOH B 10 310 32 HOH HOH . L 6 HOH B 11 311 108 HOH HOH . L 6 HOH B 12 312 57 HOH HOH . L 6 HOH B 13 313 26 HOH HOH . L 6 HOH B 14 314 84 HOH HOH . L 6 HOH B 15 315 138 HOH HOH . L 6 HOH B 16 316 19 HOH HOH . L 6 HOH B 17 317 17 HOH HOH . L 6 HOH B 18 318 6 HOH HOH . L 6 HOH B 19 319 61 HOH HOH . L 6 HOH B 20 320 135 HOH HOH . L 6 HOH B 21 321 105 HOH HOH . L 6 HOH B 22 322 56 HOH HOH . L 6 HOH B 23 323 64 HOH HOH . L 6 HOH B 24 324 129 HOH HOH . L 6 HOH B 25 325 51 HOH HOH . L 6 HOH B 26 326 25 HOH HOH . L 6 HOH B 27 327 97 HOH HOH . L 6 HOH B 28 328 4 HOH HOH . L 6 HOH B 29 329 23 HOH HOH . L 6 HOH B 30 330 60 HOH HOH . L 6 HOH B 31 331 27 HOH HOH . L 6 HOH B 32 332 89 HOH HOH . L 6 HOH B 33 333 76 HOH HOH . L 6 HOH B 34 334 40 HOH HOH . L 6 HOH B 35 335 15 HOH HOH . L 6 HOH B 36 336 43 HOH HOH . L 6 HOH B 37 337 114 HOH HOH . L 6 HOH B 38 338 130 HOH HOH . L 6 HOH B 39 339 125 HOH HOH . L 6 HOH B 40 340 94 HOH HOH . L 6 HOH B 41 341 31 HOH HOH . L 6 HOH B 42 342 58 HOH HOH . L 6 HOH B 43 343 68 HOH HOH . L 6 HOH B 44 344 62 HOH HOH . L 6 HOH B 45 345 28 HOH HOH . L 6 HOH B 46 346 85 HOH HOH . L 6 HOH B 47 347 73 HOH HOH . L 6 HOH B 48 348 49 HOH HOH . L 6 HOH B 49 349 83 HOH HOH . L 6 HOH B 50 350 71 HOH HOH . L 6 HOH B 51 351 106 HOH HOH . L 6 HOH B 52 352 46 HOH HOH . L 6 HOH B 53 353 87 HOH HOH . L 6 HOH B 54 354 78 HOH HOH . L 6 HOH B 55 355 136 HOH HOH . L 6 HOH B 56 356 80 HOH HOH . L 6 HOH B 57 357 131 HOH HOH . L 6 HOH B 58 358 133 HOH HOH . L 6 HOH B 59 359 139 HOH HOH . L 6 HOH B 60 360 88 HOH HOH . L 6 HOH B 61 361 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 4.872 6.454 -11.48 1 29.35 0 CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . C 2 3.72 7.475 -16.12 1 25.05 0 CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . C 2 7.907 5.563 -17.646 1 25.13 0 CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . C 2 9.072 4.647 -13.015 1 27.97 0 CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . C 2 4.202 6.834 -12.628 1 29.73 0 C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . C 2 2.838 7.235 -12.645 1 31.4 0 C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . C 2 2.512 7.527 -13.936 1 28.78 0 C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . C 2 3.663 7.316 -14.736 1 27.11 0 C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . C 2 1.152 8.008 -14.386 1 28.94 0 CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . C 2 1.884 7.351 -11.477 1 35.66 0 CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . C 2 1.159 6.006 -11.262 1 40.22 0 CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . C 2 0.249 6.038 -10.038 1 47.14 0 CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . C 2 0.236 5.076 -9.226 1 48.62 0 O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . C 2 -0.506 7.016 -9.826 1 49.53 0 O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . C 2 4.775 7.011 -16.912 1 24.44 0 C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . C 2 4.706 7.037 -18.341 1 24.81 0 C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . C 2 5.87 6.496 -18.806 1 24.75 0 C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . C 2 6.655 6.144 -17.596 1 27.28 0 C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . C 2 3.536 7.564 -19.153 1 26.4 0 CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . C 2 6.347 6.386 -20.192 1 23.57 0 CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . C 2 5.924 7.187 -21.172 1 26.78 0 CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . C 2 8.579 5.112 -16.498 1 28.02 0 C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . C 2 9.791 4.389 -16.504 1 27.06 0 C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . C 2 10.13 4.137 -15.177 1 26.79 0 C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . C 2 9.097 4.693 -14.391 1 27.96 0 C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . C 2 10.546 4.044 -17.772 1 28.1 0 CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . C 2 11.274 3.381 -14.587 1 27.51 0 CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . C 2 12.041 2.58 -15.284 1 27.94 0 CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . C 2 7.989 5.094 -12.278 1 28.17 0 C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . C 2 7.962 4.829 -10.829 1 31.32 0 C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . C 2 6.8 5.312 -10.401 1 33.39 0 C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . C 2 6.119 5.886 -11.587 1 28.99 0 C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . C 2 9.019 4.162 -9.96 1 29.96 0 CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . C 2 6.364 5.289 -8.942 1 39.71 0 CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . C 2 5.567 4.081 -8.484 1 46.29 0 CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . C 2 4.118 4.403 -8.718 1 51.5 0 CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . C 2 3.552 5.33 -8.08 1 59.39 0 O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . C 2 3.475 3.744 -9.568 0.2 48.91 0 O2D HEM 201 A 1 HETATM 39 N NA HEM . . . C 2 4.689 6.866 -13.93 1 28.59 0 NA HEM 201 A 1 HETATM 40 N NB HEM . . . C 2 5.932 6.494 -16.523 1 25.92 0 NB HEM 201 A 1 HETATM 41 N NC HEM . . . C 2 8.159 5.27 -15.206 1 27.07 0 NC HEM 201 A 1 HETATM 42 N ND HEM . . . C 2 6.86 5.706 -12.715 1 25.55 0 ND HEM 201 A 1 HETATM 43 FE FE HEM . . . C 2 6.482 6.272 -14.491 1 27.81 0 FE HEM 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #