data_7M1J # _model_server_result.job_id p84E2Q-RCYsGANxS0Syylw _model_server_result.datetime_utc '2025-01-10 12:58:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7M1J # _exptl.entry_id 7M1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M1J _cell.length_a 59.756 _cell.length_b 66.594 _cell.length_c 68.283 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 55 A HIS 55 1_555 C FE HEM . A HEM 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc2 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc3 B NE2 HIS 89 B HIS 89 1_555 G FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 142 n n C1 C2 GOL sing 143 n n C1 H11 GOL sing 144 n n C1 H12 GOL sing 145 n n O1 HO1 GOL sing 146 n n C2 O2 GOL sing 147 n n C2 C3 GOL sing 148 n n C2 H2 GOL sing 149 n n O2 HO2 GOL sing 150 n n C3 O3 GOL sing 151 n n C3 H31 GOL sing 152 n n C3 H32 GOL sing 153 n n O3 HO3 GOL sing 154 n n # _atom_sites.entry_id 7M1J _atom_sites.fract_transf_matrix[1][1] 0.016735 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014645 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 139 HEM HEM . D 3 GOL A 1 202 140 GOL GOL . E 4 SO4 A 1 203 1 SO4 SO4 . F 4 SO4 A 1 204 2 SO4 SO4 . G 2 HEM B 1 201 139 HEM HEM . H 5 94N B 1 202 140 94N 94N . I 6 HOH A 1 301 17 HOH HOH . I 6 HOH A 2 302 180 HOH HOH . I 6 HOH A 3 303 114 HOH HOH . I 6 HOH A 4 304 184 HOH HOH . I 6 HOH A 5 305 66 HOH HOH . I 6 HOH A 6 306 22 HOH HOH . I 6 HOH A 7 307 132 HOH HOH . I 6 HOH A 8 308 128 HOH HOH . I 6 HOH A 9 309 177 HOH HOH . I 6 HOH A 10 310 10 HOH HOH . I 6 HOH A 11 311 94 HOH HOH . I 6 HOH A 12 312 65 HOH HOH . I 6 HOH A 13 313 61 HOH HOH . I 6 HOH A 14 314 77 HOH HOH . I 6 HOH A 15 315 43 HOH HOH . I 6 HOH A 16 316 20 HOH HOH . I 6 HOH A 17 317 100 HOH HOH . I 6 HOH A 18 318 48 HOH HOH . I 6 HOH A 19 319 11 HOH HOH . I 6 HOH A 20 320 120 HOH HOH . I 6 HOH A 21 321 75 HOH HOH . I 6 HOH A 22 322 85 HOH HOH . I 6 HOH A 23 323 173 HOH HOH . I 6 HOH A 24 324 178 HOH HOH . I 6 HOH A 25 325 76 HOH HOH . I 6 HOH A 26 326 83 HOH HOH . I 6 HOH A 27 327 12 HOH HOH . I 6 HOH A 28 328 15 HOH HOH . I 6 HOH A 29 329 54 HOH HOH . I 6 HOH A 30 330 55 HOH HOH . I 6 HOH A 31 331 96 HOH HOH . I 6 HOH A 32 332 92 HOH HOH . I 6 HOH A 33 333 60 HOH HOH . I 6 HOH A 34 334 32 HOH HOH . I 6 HOH A 35 335 140 HOH HOH . I 6 HOH A 36 336 87 HOH HOH . I 6 HOH A 37 337 3 HOH HOH . I 6 HOH A 38 338 63 HOH HOH . I 6 HOH A 39 339 38 HOH HOH . I 6 HOH A 40 340 185 HOH HOH . I 6 HOH A 41 341 16 HOH HOH . I 6 HOH A 42 342 14 HOH HOH . I 6 HOH A 43 343 99 HOH HOH . I 6 HOH A 44 344 170 HOH HOH . I 6 HOH A 45 345 34 HOH HOH . I 6 HOH A 46 346 188 HOH HOH . I 6 HOH A 47 347 79 HOH HOH . I 6 HOH A 48 348 95 HOH HOH . I 6 HOH A 49 349 130 HOH HOH . I 6 HOH A 50 350 78 HOH HOH . I 6 HOH A 51 351 138 HOH HOH . I 6 HOH A 52 352 70 HOH HOH . I 6 HOH A 53 353 147 HOH HOH . I 6 HOH A 54 354 113 HOH HOH . I 6 HOH A 55 355 6 HOH HOH . I 6 HOH A 56 356 59 HOH HOH . I 6 HOH A 57 357 124 HOH HOH . I 6 HOH A 58 358 82 HOH HOH . I 6 HOH A 59 359 158 HOH HOH . I 6 HOH A 60 360 137 HOH HOH . I 6 HOH A 61 361 57 HOH HOH . I 6 HOH A 62 362 179 HOH HOH . I 6 HOH A 63 363 42 HOH HOH . I 6 HOH A 64 364 58 HOH HOH . I 6 HOH A 65 365 74 HOH HOH . I 6 HOH A 66 366 165 HOH HOH . I 6 HOH A 67 367 106 HOH HOH . I 6 HOH A 68 368 144 HOH HOH . I 6 HOH A 69 369 69 HOH HOH . I 6 HOH A 70 370 154 HOH HOH . I 6 HOH A 71 371 136 HOH HOH . I 6 HOH A 72 372 108 HOH HOH . I 6 HOH A 73 373 155 HOH HOH . I 6 HOH A 74 374 164 HOH HOH . I 6 HOH A 75 375 107 HOH HOH . I 6 HOH A 76 376 98 HOH HOH . I 6 HOH A 77 377 151 HOH HOH . I 6 HOH A 78 378 148 HOH HOH . I 6 HOH A 79 379 134 HOH HOH . J 6 HOH B 1 301 183 HOH HOH . J 6 HOH B 2 302 175 HOH HOH . J 6 HOH B 3 303 72 HOH HOH . J 6 HOH B 4 304 189 HOH HOH . J 6 HOH B 5 305 51 HOH HOH . J 6 HOH B 6 306 160 HOH HOH . J 6 HOH B 7 307 49 HOH HOH . J 6 HOH B 8 308 139 HOH HOH . J 6 HOH B 9 309 176 HOH HOH . J 6 HOH B 10 310 102 HOH HOH . J 6 HOH B 11 311 125 HOH HOH . J 6 HOH B 12 312 28 HOH HOH . J 6 HOH B 13 313 36 HOH HOH . J 6 HOH B 14 314 93 HOH HOH . J 6 HOH B 15 315 88 HOH HOH . J 6 HOH B 16 316 89 HOH HOH . J 6 HOH B 17 317 162 HOH HOH . J 6 HOH B 18 318 127 HOH HOH . J 6 HOH B 19 319 40 HOH HOH . J 6 HOH B 20 320 112 HOH HOH . J 6 HOH B 21 321 118 HOH HOH . J 6 HOH B 22 322 29 HOH HOH . J 6 HOH B 23 323 13 HOH HOH . J 6 HOH B 24 324 64 HOH HOH . J 6 HOH B 25 325 45 HOH HOH . J 6 HOH B 26 326 35 HOH HOH . J 6 HOH B 27 327 182 HOH HOH . J 6 HOH B 28 328 71 HOH HOH . J 6 HOH B 29 329 129 HOH HOH . J 6 HOH B 30 330 181 HOH HOH . J 6 HOH B 31 331 186 HOH HOH . J 6 HOH B 32 332 25 HOH HOH . J 6 HOH B 33 333 86 HOH HOH . J 6 HOH B 34 334 116 HOH HOH . J 6 HOH B 35 335 104 HOH HOH . J 6 HOH B 36 336 84 HOH HOH . J 6 HOH B 37 337 2 HOH HOH . J 6 HOH B 38 338 18 HOH HOH . J 6 HOH B 39 339 161 HOH HOH . J 6 HOH B 40 340 105 HOH HOH . J 6 HOH B 41 341 91 HOH HOH . J 6 HOH B 42 342 53 HOH HOH . J 6 HOH B 43 343 80 HOH HOH . J 6 HOH B 44 344 4 HOH HOH . J 6 HOH B 45 345 1 HOH HOH . J 6 HOH B 46 346 135 HOH HOH . J 6 HOH B 47 347 159 HOH HOH . J 6 HOH B 48 348 21 HOH HOH . J 6 HOH B 49 349 41 HOH HOH . J 6 HOH B 50 350 27 HOH HOH . J 6 HOH B 51 351 122 HOH HOH . J 6 HOH B 52 352 133 HOH HOH . J 6 HOH B 53 353 23 HOH HOH . J 6 HOH B 54 354 97 HOH HOH . J 6 HOH B 55 355 90 HOH HOH . J 6 HOH B 56 356 39 HOH HOH . J 6 HOH B 57 357 50 HOH HOH . J 6 HOH B 58 358 73 HOH HOH . J 6 HOH B 59 359 7 HOH HOH . J 6 HOH B 60 360 126 HOH HOH . J 6 HOH B 61 361 141 HOH HOH . J 6 HOH B 62 362 8 HOH HOH . J 6 HOH B 63 363 145 HOH HOH . J 6 HOH B 64 364 131 HOH HOH . J 6 HOH B 65 365 52 HOH HOH . J 6 HOH B 66 366 121 HOH HOH . J 6 HOH B 67 367 24 HOH HOH . J 6 HOH B 68 368 9 HOH HOH . J 6 HOH B 69 369 115 HOH HOH . J 6 HOH B 70 370 46 HOH HOH . J 6 HOH B 71 371 67 HOH HOH . J 6 HOH B 72 372 44 HOH HOH . J 6 HOH B 73 373 187 HOH HOH . J 6 HOH B 74 374 142 HOH HOH . J 6 HOH B 75 375 119 HOH HOH . J 6 HOH B 76 376 26 HOH HOH . J 6 HOH B 77 377 31 HOH HOH . J 6 HOH B 78 378 109 HOH HOH . J 6 HOH B 79 379 117 HOH HOH . J 6 HOH B 80 380 146 HOH HOH . J 6 HOH B 81 381 30 HOH HOH . J 6 HOH B 82 382 5 HOH HOH . J 6 HOH B 83 383 156 HOH HOH . J 6 HOH B 84 384 169 HOH HOH . J 6 HOH B 85 385 150 HOH HOH . J 6 HOH B 86 386 68 HOH HOH . J 6 HOH B 87 387 153 HOH HOH . J 6 HOH B 88 388 174 HOH HOH . J 6 HOH B 89 389 81 HOH HOH . J 6 HOH B 90 390 157 HOH HOH . J 6 HOH B 91 391 62 HOH HOH . J 6 HOH B 92 392 47 HOH HOH . J 6 HOH B 93 393 152 HOH HOH . J 6 HOH B 94 394 103 HOH HOH . J 6 HOH B 95 395 149 HOH HOH . J 6 HOH B 96 396 56 HOH HOH . J 6 HOH B 97 397 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -6.848 -6.42 31.77 1 37.77 0 C1 GOL 202 A 1 HETATM 2 O O1 GOL . . . D 3 -6.932 -7.714 32.397 1 46.84 0 O1 GOL 202 A 1 HETATM 3 C C2 GOL . . . D 3 -7.819 -6.413 30.639 1 40.34 0 C2 GOL 202 A 1 HETATM 4 O O2 GOL . . . D 3 -7.947 -7.761 30.163 1 43.83 0 O2 GOL 202 A 1 HETATM 5 C C3 GOL . . . D 3 -7.399 -5.548 29.486 1 32.22 0 C3 GOL 202 A 1 HETATM 6 O O3 GOL . . . D 3 -8.48 -5.437 28.607 1 27.33 0 O3 GOL 202 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #