data_7M1K # _model_server_result.job_id 496xrH9DGY9IeWVsNPDP_Q _model_server_result.datetime_utc '2025-01-10 16:43:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":202}' # _entry.id 7M1K # _exptl.entry_id 7M1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M1K _cell.length_a 59.145 _cell.length_b 66.697 _cell.length_c 68.028 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,N 1 1 B,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc2 B NE2 HIS 89 B HIS 89 1_555 K FE HEM . B HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc3 K FE HEM . B HEM 202 1_555 O O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 155 n n CHA C4D HEM doub 156 n n CHA HHA HEM sing 157 n n CHB C4A HEM sing 158 n n CHB C1B HEM doub 159 n n CHB HHB HEM sing 160 n n CHC C4B HEM sing 161 n n CHC C1C HEM doub 162 n n CHC HHC HEM sing 163 n n CHD C4C HEM doub 164 n n CHD C1D HEM sing 165 n n CHD HHD HEM sing 166 n n C1A C2A HEM doub 167 n y C1A NA HEM sing 168 n y C2A C3A HEM sing 169 n y C2A CAA HEM sing 170 n n C3A C4A HEM doub 171 n y C3A CMA HEM sing 172 n n C4A NA HEM sing 173 n y CMA HMA HEM sing 174 n n CMA HMAA HEM sing 175 n n CMA HMAB HEM sing 176 n n CAA CBA HEM sing 177 n n CAA HAA HEM sing 178 n n CAA HAAA HEM sing 179 n n CBA CGA HEM sing 180 n n CBA HBA HEM sing 181 n n CBA HBAA HEM sing 182 n n CGA O1A HEM doub 183 n n CGA O2A HEM sing 184 n n C1B C2B HEM sing 185 n n C1B NB HEM sing 186 n n C2B C3B HEM doub 187 n n C2B CMB HEM sing 188 n n C3B C4B HEM sing 189 n n C3B CAB HEM sing 190 n n C4B NB HEM doub 191 n n CMB HMB HEM sing 192 n n CMB HMBA HEM sing 193 n n CMB HMBB HEM sing 194 n n CAB CBB HEM doub 195 n n CAB HAB HEM sing 196 n n CBB HBB HEM sing 197 n n CBB HBBA HEM sing 198 n n C1C C2C HEM sing 199 n y C1C NC HEM sing 200 n y C2C C3C HEM doub 201 n y C2C CMC HEM sing 202 n n C3C C4C HEM sing 203 n y C3C CAC HEM sing 204 n n C4C NC HEM sing 205 n y CMC HMC HEM sing 206 n n CMC HMCA HEM sing 207 n n CMC HMCB HEM sing 208 n n CAC CBC HEM doub 209 n n CAC HAC HEM sing 210 n n CBC HBC HEM sing 211 n n CBC HBCA HEM sing 212 n n C1D C2D HEM sing 213 n n C1D ND HEM doub 214 n n C2D C3D HEM doub 215 n n C2D CMD HEM sing 216 n n C3D C4D HEM sing 217 n n C3D CAD HEM sing 218 n n C4D ND HEM sing 219 n n CMD HMD HEM sing 220 n n CMD HMDA HEM sing 221 n n CMD HMDB HEM sing 222 n n CAD CBD HEM sing 223 n n CAD HAD HEM sing 224 n n CAD HADA HEM sing 225 n n CBD CGD HEM sing 226 n n CBD HBD HEM sing 227 n n CBD HBDA HEM sing 228 n n CGD O1D HEM doub 229 n n CGD O2D HEM sing 230 n n O2A H2A HEM sing 231 n n O2D H2D HEM sing 232 n n FE NA HEM sing 233 n n FE NB HEM sing 234 n n FE NC HEM sing 235 n n FE ND HEM sing 236 n n # _atom_sites.entry_id 7M1K _atom_sites.fract_transf_matrix[1][1] 0.016908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 201 139 HEM HEM . D 3 GOL A 1 202 201 GOL GOL . E 4 FFP A 1 203 401 FFP FFP . F 3 GOL A 1 204 501 GOL GOL . G 3 GOL A 1 205 502 GOL GOL . H 5 SO4 A 1 206 1 SO4 SO4 . I 5 SO4 A 1 207 2 SO4 SO4 . J 3 GOL B 1 201 503 GOL GOL . K 2 HEM B 1 202 139 HEM HEM . L 3 GOL B 1 203 201 GOL GOL . M 4 FFP B 1 204 301 FFP FFP . N 6 HOH A 1 301 69 HOH HOH . N 6 HOH A 2 302 74 HOH HOH . N 6 HOH A 3 303 68 HOH HOH . N 6 HOH A 4 304 111 HOH HOH . N 6 HOH A 5 305 108 HOH HOH . N 6 HOH A 6 306 120 HOH HOH . N 6 HOH A 7 307 47 HOH HOH . N 6 HOH A 8 308 106 HOH HOH . N 6 HOH A 9 309 33 HOH HOH . N 6 HOH A 10 310 27 HOH HOH . N 6 HOH A 11 311 124 HOH HOH . N 6 HOH A 12 312 92 HOH HOH . N 6 HOH A 13 313 75 HOH HOH . N 6 HOH A 14 314 79 HOH HOH . N 6 HOH A 15 315 126 HOH HOH . N 6 HOH A 16 316 95 HOH HOH . N 6 HOH A 17 317 58 HOH HOH . N 6 HOH A 18 318 13 HOH HOH . N 6 HOH A 19 319 34 HOH HOH . N 6 HOH A 20 320 107 HOH HOH . N 6 HOH A 21 321 30 HOH HOH . N 6 HOH A 22 322 122 HOH HOH . N 6 HOH A 23 323 14 HOH HOH . N 6 HOH A 24 324 12 HOH HOH . N 6 HOH A 25 325 87 HOH HOH . N 6 HOH A 26 326 140 HOH HOH . N 6 HOH A 27 327 112 HOH HOH . N 6 HOH A 28 328 15 HOH HOH . N 6 HOH A 29 329 35 HOH HOH . N 6 HOH A 30 330 45 HOH HOH . N 6 HOH A 31 331 1 HOH HOH . N 6 HOH A 32 332 25 HOH HOH . N 6 HOH A 33 333 43 HOH HOH . N 6 HOH A 34 334 53 HOH HOH . N 6 HOH A 35 335 86 HOH HOH . N 6 HOH A 36 336 137 HOH HOH . N 6 HOH A 37 337 29 HOH HOH . N 6 HOH A 38 338 134 HOH HOH . N 6 HOH A 39 339 17 HOH HOH . N 6 HOH A 40 340 59 HOH HOH . N 6 HOH A 41 341 48 HOH HOH . N 6 HOH A 42 342 32 HOH HOH . N 6 HOH A 43 343 20 HOH HOH . N 6 HOH A 44 344 42 HOH HOH . N 6 HOH A 45 345 139 HOH HOH . N 6 HOH A 46 346 23 HOH HOH . N 6 HOH A 47 347 72 HOH HOH . N 6 HOH A 48 348 8 HOH HOH . N 6 HOH A 49 349 6 HOH HOH . N 6 HOH A 50 350 125 HOH HOH . N 6 HOH A 51 351 52 HOH HOH . N 6 HOH A 52 352 97 HOH HOH . N 6 HOH A 53 353 109 HOH HOH . N 6 HOH A 54 354 104 HOH HOH . N 6 HOH A 55 355 88 HOH HOH . N 6 HOH A 56 356 129 HOH HOH . N 6 HOH A 57 357 110 HOH HOH . N 6 HOH A 58 358 123 HOH HOH . N 6 HOH A 59 359 85 HOH HOH . N 6 HOH A 60 360 136 HOH HOH . N 6 HOH A 61 361 64 HOH HOH . N 6 HOH A 62 362 66 HOH HOH . N 6 HOH A 63 363 65 HOH HOH . O 6 HOH B 1 301 132 HOH HOH . O 6 HOH B 2 302 98 HOH HOH . O 6 HOH B 3 303 130 HOH HOH . O 6 HOH B 4 304 51 HOH HOH . O 6 HOH B 5 305 138 HOH HOH . O 6 HOH B 6 306 135 HOH HOH . O 6 HOH B 7 307 128 HOH HOH . O 6 HOH B 8 308 37 HOH HOH . O 6 HOH B 9 309 133 HOH HOH . O 6 HOH B 10 310 70 HOH HOH . O 6 HOH B 11 311 78 HOH HOH . O 6 HOH B 12 312 93 HOH HOH . O 6 HOH B 13 313 131 HOH HOH . O 6 HOH B 14 314 4 HOH HOH . O 6 HOH B 15 315 38 HOH HOH . O 6 HOH B 16 316 115 HOH HOH . O 6 HOH B 17 317 76 HOH HOH . O 6 HOH B 18 318 83 HOH HOH . O 6 HOH B 19 319 40 HOH HOH . O 6 HOH B 20 320 71 HOH HOH . O 6 HOH B 21 321 117 HOH HOH . O 6 HOH B 22 322 5 HOH HOH . O 6 HOH B 23 323 121 HOH HOH . O 6 HOH B 24 324 9 HOH HOH . O 6 HOH B 25 325 61 HOH HOH . O 6 HOH B 26 326 89 HOH HOH . O 6 HOH B 27 327 24 HOH HOH . O 6 HOH B 28 328 28 HOH HOH . O 6 HOH B 29 329 19 HOH HOH . O 6 HOH B 30 330 54 HOH HOH . O 6 HOH B 31 331 16 HOH HOH . O 6 HOH B 32 332 46 HOH HOH . O 6 HOH B 33 333 99 HOH HOH . O 6 HOH B 34 334 56 HOH HOH . O 6 HOH B 35 335 114 HOH HOH . O 6 HOH B 36 336 41 HOH HOH . O 6 HOH B 37 337 82 HOH HOH . O 6 HOH B 38 338 50 HOH HOH . O 6 HOH B 39 339 94 HOH HOH . O 6 HOH B 40 340 102 HOH HOH . O 6 HOH B 41 341 7 HOH HOH . O 6 HOH B 42 342 73 HOH HOH . O 6 HOH B 43 343 21 HOH HOH . O 6 HOH B 44 344 103 HOH HOH . O 6 HOH B 45 345 10 HOH HOH . O 6 HOH B 46 346 18 HOH HOH . O 6 HOH B 47 347 116 HOH HOH . O 6 HOH B 48 348 62 HOH HOH . O 6 HOH B 49 349 57 HOH HOH . O 6 HOH B 50 350 60 HOH HOH . O 6 HOH B 51 351 63 HOH HOH . O 6 HOH B 52 352 127 HOH HOH . O 6 HOH B 53 353 81 HOH HOH . O 6 HOH B 54 354 90 HOH HOH . O 6 HOH B 55 355 49 HOH HOH . O 6 HOH B 56 356 26 HOH HOH . O 6 HOH B 57 357 44 HOH HOH . O 6 HOH B 58 358 80 HOH HOH . O 6 HOH B 59 359 55 HOH HOH . O 6 HOH B 60 360 39 HOH HOH . O 6 HOH B 61 361 91 HOH HOH . O 6 HOH B 62 362 84 HOH HOH . O 6 HOH B 63 363 118 HOH HOH . O 6 HOH B 64 364 100 HOH HOH . O 6 HOH B 65 365 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . K 2 -21.031 -5.199 -22.845 1 21.87 0 CHA HEM 202 B 1 HETATM 2 C CHB HEM . . . K 2 -19.903 -0.695 -24.386 1 20.55 0 CHB HEM 202 B 1 HETATM 3 C CHC HEM . . . K 2 -23.935 1.061 -22.274 1 21.13 0 CHC HEM 202 B 1 HETATM 4 C CHD HEM . . . K 2 -25.202 -3.511 -21.132 1 23.22 0 CHD HEM 202 B 1 HETATM 5 C C1A HEM . . . K 2 -20.384 -4.084 -23.391 1 21.8 0 C1A HEM 202 B 1 HETATM 6 C C2A HEM . . . K 2 -19.066 -4.135 -23.9 1 20.96 0 C2A HEM 202 B 1 HETATM 7 C C3A HEM . . . K 2 -18.741 -2.894 -24.332 1 21.25 0 C3A HEM 202 B 1 HETATM 8 C C4A HEM . . . K 2 -19.859 -2.043 -24.104 1 20.05 0 C4A HEM 202 B 1 HETATM 9 C CMA HEM . . . K 2 -17.422 -2.502 -24.957 1 20.87 0 CMA HEM 202 B 1 HETATM 10 C CAA HEM . . . K 2 -18.159 -5.346 -23.941 1 24.69 0 CAA HEM 202 B 1 HETATM 11 C CBA HEM . . . K 2 -17.34 -5.348 -22.639 1 29.38 0 CBA HEM 202 B 1 HETATM 12 C CGA HEM . . . K 2 -16.702 -6.674 -22.287 1 35.86 0 CGA HEM 202 B 1 HETATM 13 O O1A HEM . . . K 2 -16.725 -7.079 -21.096 1 41.65 0 O1A HEM 202 B 1 HETATM 14 O O2A HEM . . . K 2 -16.195 -7.393 -23.149 1 39.61 0 O2A HEM 202 B 1 HETATM 15 C C1B HEM . . . K 2 -20.906 0.178 -23.911 1 19.61 0 C1B HEM 202 B 1 HETATM 16 C C2B HEM . . . K 2 -20.859 1.594 -24.044 1 18.92 0 C2B HEM 202 B 1 HETATM 17 C C3B HEM . . . K 2 -21.977 2.127 -23.436 1 18.62 0 C3B HEM 202 B 1 HETATM 18 C C4B HEM . . . K 2 -22.723 0.958 -22.941 1 19.63 0 C4B HEM 202 B 1 HETATM 19 C CMB HEM . . . K 2 -19.715 2.319 -24.711 1 18.81 0 CMB HEM 202 B 1 HETATM 20 C CAB HEM . . . K 2 -22.435 3.537 -23.318 1 20.73 0 CAB HEM 202 B 1 HETATM 21 C CBB HEM . . . K 2 -21.872 4.544 -24.003 1 21.66 0 CBB HEM 202 B 1 HETATM 22 C C1C HEM . . . K 2 -24.636 -0.038 -21.773 1 21.28 0 C1C HEM 202 B 1 HETATM 23 C C2C HEM . . . K 2 -25.824 0.024 -21.048 1 21.96 0 C2C HEM 202 B 1 HETATM 24 C C3C HEM . . . K 2 -26.205 -1.285 -20.724 1 22.75 0 C3C HEM 202 B 1 HETATM 25 C C4C HEM . . . K 2 -25.199 -2.133 -21.258 1 23 0 C4C HEM 202 B 1 HETATM 26 C CMC HEM . . . K 2 -26.518 1.309 -20.721 1 21.77 0 CMC HEM 202 B 1 HETATM 27 C CAC HEM . . . K 2 -27.337 -1.77 -19.882 1 24.57 0 CAC HEM 202 B 1 HETATM 28 C CBC HEM . . . K 2 -28.013 -0.946 -19.054 1 25.2 0 CBC HEM 202 B 1 HETATM 29 C C1D HEM . . . K 2 -24.132 -4.292 -21.522 1 22.1 0 C1D HEM 202 B 1 HETATM 30 C C2D HEM . . . K 2 -24.118 -5.725 -21.172 1 24.42 0 C2D HEM 202 B 1 HETATM 31 C C3D HEM . . . K 2 -22.96 -6.2 -21.64 1 25.74 0 C3D HEM 202 B 1 HETATM 32 C C4D HEM . . . K 2 -22.285 -5.047 -22.281 1 22.54 0 C4D HEM 202 B 1 HETATM 33 C CMD HEM . . . K 2 -25.176 -6.519 -20.459 1 24.41 0 CMD HEM 202 B 1 HETATM 34 C CAD HEM . . . K 2 -22.497 -7.642 -21.52 1 31.67 0 CAD HEM 202 B 1 HETATM 35 C CBD HEM . . . K 2 -21.645 -7.785 -20.235 1 34.14 0 CBD HEM 202 B 1 HETATM 36 C CGD HEM . . . K 2 -21 -9.144 -20.131 1 39.38 0 CGD HEM 202 B 1 HETATM 37 O O1D HEM . . . K 2 -21.337 -10.016 -20.954 1 40.54 0 O1D HEM 202 B 1 HETATM 38 O O2D HEM . . . K 2 -20.148 -9.394 -19.251 0.2 36.41 0 O2D HEM 202 B 1 HETATM 39 N NA HEM . . . K 2 -20.851 -2.775 -23.507 1 19.84 0 NA HEM 202 B 1 HETATM 40 N NB HEM . . . K 2 -22.031 -0.152 -23.275 1 19.63 0 NB HEM 202 B 1 HETATM 41 N NC HEM . . . K 2 -24.265 -1.346 -21.901 1 20.96 0 NC HEM 202 B 1 HETATM 42 N ND HEM . . . K 2 -23.018 -3.909 -22.173 1 21.3 0 ND HEM 202 B 1 HETATM 43 FE FE HEM . . . K 2 -22.594 -2.117 -22.847 1 20.73 0 FE HEM 202 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #