data_7M1T # _model_server_result.job_id T6_t0ugORrdC5HYIud3d6A _model_server_result.datetime_utc '2025-07-05 06:04:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m1t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":408}' # _entry.id 7M1T # _exptl.entry_id 7M1T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M1T _cell.length_a 61.05 _cell.length_b 118.676 _cell.length_c 177.305 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M1T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 21 A SER 21 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc2 A OG SER 21 A SER 21 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 A OG SER 25 A SER 25 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc4 A OG SER 71 A SER 71 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc5 A O GLY 110 A GLY 110 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc6 A OE2 GLU 111 A GLU 111 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc7 J O1G ATP . A ATP 408 1_555 M MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc8 J O1B ATP . A ATP 408 1_555 M MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc9 J O1A ATP . A ATP 408 1_555 M MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc10 L MG MG . B MG 401 1_555 T O1B ATP . B ATP 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc11 L MG MG . B MG 401 1_555 T O3B ATP . B ATP 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc12 L MG MG . B MG 401 1_555 T O1A ATP . B ATP 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 107 n n PG O2G ATP sing 108 n n PG O3G ATP sing 109 n n PG O3B ATP sing 110 n n O2G HOG2 ATP sing 111 n n O3G HOG3 ATP sing 112 n n PB O1B ATP doub 113 n n PB O2B ATP sing 114 n n PB O3B ATP sing 115 n n PB O3A ATP sing 116 n n O2B HOB2 ATP sing 117 n n PA O1A ATP doub 118 n n PA O2A ATP sing 119 n n PA O3A ATP sing 120 n n PA O5' ATP sing 121 n n O2A HOA2 ATP sing 122 n n O5' C5' ATP sing 123 n n C5' C4' ATP sing 124 n n C5' "H5'1" ATP sing 125 n n C5' "H5'2" ATP sing 126 n n C4' O4' ATP sing 127 n n C4' C3' ATP sing 128 n n C4' H4' ATP sing 129 n n O4' C1' ATP sing 130 n n C3' O3' ATP sing 131 n n C3' C2' ATP sing 132 n n C3' H3' ATP sing 133 n n O3' HO3' ATP sing 134 n n C2' O2' ATP sing 135 n n C2' C1' ATP sing 136 n n C2' H2' ATP sing 137 n n O2' HO2' ATP sing 138 n n C1' N9 ATP sing 139 n n C1' H1' ATP sing 140 n n N9 C8 ATP sing 141 n y N9 C4 ATP sing 142 n y C8 N7 ATP doub 143 n y C8 H8 ATP sing 144 n n N7 C5 ATP sing 145 n y C5 C6 ATP sing 146 n y C5 C4 ATP doub 147 n y C6 N6 ATP sing 148 n n C6 N1 ATP doub 149 n y N6 HN61 ATP sing 150 n n N6 HN62 ATP sing 151 n n N1 C2 ATP sing 152 n y C2 N3 ATP doub 153 n y C2 H2 ATP sing 154 n n N3 C4 ATP sing 155 n y # _atom_sites.entry_id 7M1T _atom_sites.fract_transf_matrix[1][1] 0.01638 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008426 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 401 4 MG MG . D 3 SO4 A 1 402 2 SO4 SO4 . E 4 UMQ A 1 403 2 UMQ UMQ . F 4 UMQ A 1 404 3 UMQ UMQ . G 4 UMQ A 1 405 4 UMQ UMQ . H 4 UMQ A 1 406 5 UMQ UMQ . I 4 UMQ A 1 407 6 UMQ UMQ . J 5 ATP A 1 408 1 ATP ATP . K 6 1PE A 1 409 1 1PE 1PE . L 2 MG B 1 401 1 MG MG . M 2 MG B 1 402 2 MG MG . N 3 SO4 B 1 403 1 SO4 SO4 . O 4 UMQ B 1 404 1 UMQ UMQ . P 4 UMQ B 1 405 7 UMQ UMQ . Q 4 UMQ B 1 406 8 UMQ UMQ . R 4 UMQ B 1 407 9 UMQ UMQ . S 4 UMQ B 1 408 10 UMQ UMQ . T 5 ATP B 1 409 2 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . J 5 73.393 114.264 70.47 1 22.56 ? PG ATP 408 A 1 HETATM 2 O O1G ATP . . . J 5 73.069 113.468 71.713 1 35.9 ? O1G ATP 408 A 1 HETATM 3 O O2G ATP . . . J 5 73.543 113.333 69.29 1 26.1 ? O2G ATP 408 A 1 HETATM 4 O O3G ATP . . . J 5 74.671 115.038 70.679 1 36.69 ? O3G ATP 408 A 1 HETATM 5 P PB ATP . . . J 5 71.317 115.952 71.462 1 13.58 ? PB ATP 408 A 1 HETATM 6 O O1B ATP . . . J 5 71.66 115.167 72.704 1 26.57 ? O1B ATP 408 A 1 HETATM 7 O O2B ATP . . . J 5 71.675 117.406 71.646 1 38.96 ? O2B ATP 408 A 1 HETATM 8 O O3B ATP . . . J 5 72.161 115.317 70.204 1 13.48 ? O3B ATP 408 A 1 HETATM 9 P PA ATP . . . J 5 69.03 114.302 70.98 1 19.43 ? PA ATP 408 A 1 HETATM 10 O O1A ATP . . . J 5 69.796 113.301 71.813 1 18.13 ? O1A ATP 408 A 1 HETATM 11 O O2A ATP . . . J 5 69.076 113.898 69.525 1 16.83 ? O2A ATP 408 A 1 HETATM 12 O O3A ATP . . . J 5 69.709 115.787 71.166 1 13.43 ? O3A ATP 408 A 1 HETATM 13 O O5' ATP . . . J 5 67.47 114.344 71.492 1 12.79 ? O5' ATP 408 A 1 HETATM 14 C C5' ATP . . . J 5 67.224 114.108 72.845 1 12.65 ? C5' ATP 408 A 1 HETATM 15 C C4' ATP . . . J 5 65.985 114.94 73.253 1 12.91 ? C4' ATP 408 A 1 HETATM 16 O O4' ATP . . . J 5 66.242 116.199 73.028 1 13.38 ? O4' ATP 408 A 1 HETATM 17 C C3' ATP . . . J 5 64.784 114.567 72.358 1 12.8 ? C3' ATP 408 A 1 HETATM 18 O O3' ATP . . . J 5 63.648 114.486 73.095 1 13.65 ? O3' ATP 408 A 1 HETATM 19 C C2' ATP . . . J 5 64.671 115.727 71.358 1 13.41 ? C2' ATP 408 A 1 HETATM 20 O O2' ATP . . . J 5 63.246 115.903 70.945 1 13.34 ? O2' ATP 408 A 1 HETATM 21 C C1' ATP . . . J 5 65.088 116.757 72.045 1 24.95 ? C1' ATP 408 A 1 HETATM 22 N N9 ATP . . . J 5 65.642 117.787 71.202 1 35.37 ? N9 ATP 408 A 1 HETATM 23 C C8 ATP . . . J 5 66.703 117.724 70.391 1 37.88 ? C8 ATP 408 A 1 HETATM 24 N N7 ATP . . . J 5 66.854 118.918 69.811 1 40.93 ? N7 ATP 408 A 1 HETATM 25 C C5 ATP . . . J 5 65.888 119.724 70.27 1 36.81 ? C5 ATP 408 A 1 HETATM 26 C C6 ATP . . . J 5 65.583 121.039 70.006 1 40.65 ? C6 ATP 408 A 1 HETATM 27 N N6 ATP . . . J 5 66.213 122.014 69.134 1 25.59 ? N6 ATP 408 A 1 HETATM 28 N N1 ATP . . . J 5 64.553 121.611 70.608 1 41.42 ? N1 ATP 408 A 1 HETATM 29 C C2 ATP . . . J 5 63.799 120.902 71.481 1 31.19 ? C2 ATP 408 A 1 HETATM 30 N N3 ATP . . . J 5 64.096 119.61 71.739 1 19.47 ? N3 ATP 408 A 1 HETATM 31 C C4 ATP . . . J 5 65.142 119.028 71.13 1 25.82 ? C4 ATP 408 A 1 HETATM 32 H "H5'1" ATP . . . J 5 67.992 114.379 73.373 1 12.79 ? "H5'1" ATP 408 A 1 HETATM 33 H "H5'2" ATP . . . J 5 67.05 113.165 72.99 1 12.79 ? "H5'2" ATP 408 A 1 HETATM 34 H H4' ATP . . . J 5 65.743 114.802 74.182 1 12.91 ? H4' ATP 408 A 1 HETATM 35 H H3' ATP . . . J 5 64.95 113.726 71.903 1 12.16 ? H3' ATP 408 A 1 HETATM 36 H H2' ATP . . . J 5 65.224 115.585 70.573 1 16.73 ? H2' ATP 408 A 1 HETATM 37 H HO2' ATP . . . J 5 63.039 115.3 70.383 1 12.81 ? HO2' ATP 408 A 1 HETATM 38 H H1' ATP . . . J 5 64.337 117.111 72.547 1 30.58 ? H1' ATP 408 A 1 HETATM 39 H H8 ATP . . . J 5 67.242 116.979 70.254 1 46.09 ? H8 ATP 408 A 1 HETATM 40 H HN61 ATP . . . J 5 66.868 121.778 68.629 1 31.35 ? HN61 ATP 408 A 1 HETATM 41 H HN62 ATP . . . J 5 65.933 122.827 69.123 1 31.35 ? HN62 ATP 408 A 1 HETATM 42 H H2 ATP . . . J 5 63.075 121.305 71.903 1 38.06 ? H2 ATP 408 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 42 #