data_7M1T # _model_server_result.job_id wuILQad4KQhxAF9a3o0Gpw _model_server_result.datetime_utc '2025-07-05 06:04:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m1t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":409}' # _entry.id 7M1T # _exptl.entry_id 7M1T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M1T _cell.length_a 61.05 _cell.length_b 118.676 _cell.length_c 177.305 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M1T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 21 A SER 21 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc2 A OG SER 21 A SER 21 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 A OG SER 25 A SER 25 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc4 A OG SER 71 A SER 71 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc5 A O GLY 110 A GLY 110 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc6 A OE2 GLU 111 A GLU 111 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc7 J O1G ATP . A ATP 408 1_555 M MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc8 J O1B ATP . A ATP 408 1_555 M MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc9 J O1A ATP . A ATP 408 1_555 M MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc10 L MG MG . B MG 401 1_555 T O1B ATP . B ATP 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc11 L MG MG . B MG 401 1_555 T O3B ATP . B ATP 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc12 L MG MG . B MG 401 1_555 T O1A ATP . B ATP 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 7M1T _atom_sites.fract_transf_matrix[1][1] 0.01638 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008426 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 401 4 MG MG . D 3 SO4 A 1 402 2 SO4 SO4 . E 4 UMQ A 1 403 2 UMQ UMQ . F 4 UMQ A 1 404 3 UMQ UMQ . G 4 UMQ A 1 405 4 UMQ UMQ . H 4 UMQ A 1 406 5 UMQ UMQ . I 4 UMQ A 1 407 6 UMQ UMQ . J 5 ATP A 1 408 1 ATP ATP . K 6 1PE A 1 409 1 1PE 1PE . L 2 MG B 1 401 1 MG MG . M 2 MG B 1 402 2 MG MG . N 3 SO4 B 1 403 1 SO4 SO4 . O 4 UMQ B 1 404 1 UMQ UMQ . P 4 UMQ B 1 405 7 UMQ UMQ . Q 4 UMQ B 1 406 8 UMQ UMQ . R 4 UMQ B 1 407 9 UMQ UMQ . S 4 UMQ B 1 408 10 UMQ UMQ . T 5 ATP B 1 409 2 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . K 6 51.022 85.217 47.117 1 70.31 ? OH2 1PE 409 A 1 HETATM 2 C C12 1PE . . . K 6 51.514 85.099 48.424 1 73.08 ? C12 1PE 409 A 1 HETATM 3 C C22 1PE . . . K 6 52.123 83.712 48.616 1 65.93 ? C22 1PE 409 A 1 HETATM 4 O OH3 1PE . . . K 6 51.186 82.864 49.218 1 66.12 ? OH3 1PE 409 A 1 HETATM 5 C C13 1PE . . . K 6 50.245 81.83 51.157 1 77.68 ? C13 1PE 409 A 1 HETATM 6 C C23 1PE . . . K 6 51.177 82.913 50.617 1 72.8 ? C23 1PE 409 A 1 HETATM 7 O OH4 1PE . . . K 6 50.872 81.167 52.219 1 69.65 ? OH4 1PE 409 A 1 HETATM 8 C C14 1PE . . . K 6 50.771 80.184 54.384 1 43.59 ? C14 1PE 409 A 1 HETATM 9 C C24 1PE . . . K 6 50.217 81.26 53.454 1 49.51 ? C24 1PE 409 A 1 HETATM 10 O OH5 1PE . . . K 6 50.906 80.698 55.679 1 52.38 ? OH5 1PE 409 A 1 HETATM 11 C C15 1PE . . . K 6 52.113 80.778 57.745 1 16.54 ? C15 1PE 409 A 1 HETATM 12 C C25 1PE . . . K 6 52.153 80.43 56.259 1 38.31 ? C25 1PE 409 A 1 HETATM 13 O OH6 1PE . . . K 6 52.633 79.709 58.484 1 14.28 ? OH6 1PE 409 A 1 HETATM 14 C C16 1PE . . . K 6 52.422 77.433 59.206 1 15.35 ? C16 1PE 409 A 1 HETATM 15 C C26 1PE . . . K 6 51.7 78.7 58.753 1 17.25 ? C26 1PE 409 A 1 HETATM 16 O OH7 1PE . . . K 6 51.481 76.432 59.478 1 11.29 ? OH7 1PE 409 A 1 HETATM 17 H HO2 1PE . . . K 6 50.355 84.699 47.018 1 85.02 ? HO2 1PE 409 A 1 HETATM 18 H H121 1PE . . . K 6 52.194 85.774 48.576 1 88.33 ? H121 1PE 409 A 1 HETATM 19 H H122 1PE . . . K 6 50.788 85.224 49.056 1 88.33 ? H122 1PE 409 A 1 HETATM 20 H H221 1PE . . . K 6 52.378 83.35 47.753 1 79.76 ? H221 1PE 409 A 1 HETATM 21 H H222 1PE . . . K 6 52.907 83.779 49.182 1 79.76 ? H222 1PE 409 A 1 HETATM 22 H H131 1PE . . . K 6 49.422 82.238 51.471 1 93.85 ? H131 1PE 409 A 1 HETATM 23 H H132 1PE . . . K 6 50.043 81.195 50.453 1 93.85 ? H132 1PE 409 A 1 HETATM 24 H H231 1PE . . . K 6 52.075 82.762 50.951 1 88 ? H231 1PE 409 A 1 HETATM 25 H H232 1PE . . . K 6 50.865 83.784 50.908 1 88 ? H232 1PE 409 A 1 HETATM 26 H H141 1PE . . . K 6 50.164 79.428 54.4 1 52.94 ? H141 1PE 409 A 1 HETATM 27 H H142 1PE . . . K 6 51.639 79.895 54.061 1 52.94 ? H142 1PE 409 A 1 HETATM 28 H H241 1PE . . . K 6 50.371 82.137 53.84 1 60.06 ? H241 1PE 409 A 1 HETATM 29 H H242 1PE . . . K 6 49.265 81.125 53.329 1 60.06 ? H242 1PE 409 A 1 HETATM 30 H H151 1PE . . . K 6 52.645 81.573 57.907 1 20.49 ? H151 1PE 409 A 1 HETATM 31 H H152 1PE . . . K 6 51.196 80.943 58.015 1 20.49 ? H152 1PE 409 A 1 HETATM 32 H H251 1PE . . . K 6 52.834 80.964 55.821 1 46.62 ? H251 1PE 409 A 1 HETATM 33 H H252 1PE . . . K 6 52.362 79.489 56.154 1 46.62 ? H252 1PE 409 A 1 HETATM 34 H H161 1PE . . . K 6 53.021 77.133 58.504 1 19.06 ? H161 1PE 409 A 1 HETATM 35 H H162 1PE . . . K 6 52.934 77.622 60.008 1 19.06 ? H162 1PE 409 A 1 HETATM 36 H H261 1PE . . . K 6 51.099 78.997 59.455 1 21.34 ? H261 1PE 409 A 1 HETATM 37 H H262 1PE . . . K 6 51.19 78.51 57.95 1 21.34 ? H262 1PE 409 A 1 HETATM 38 H HO7 1PE . . . K 6 50.703 76.773 59.503 1 10.35 ? HO7 1PE 409 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #