data_7M1T # _model_server_result.job_id OjbiYsHBHfB0DIPLqG2ppA _model_server_result.datetime_utc '2025-07-05 14:47:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m1t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":409}' # _entry.id 7M1T # _exptl.entry_id 7M1T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M1T _cell.length_a 61.05 _cell.length_b 118.676 _cell.length_c 177.305 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M1T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 21 A SER 21 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc2 A OG SER 21 A SER 21 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 A OG SER 25 A SER 25 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc4 A OG SER 71 A SER 71 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc5 A O GLY 110 A GLY 110 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc6 A OE2 GLU 111 A GLU 111 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc7 J O1G ATP . A ATP 408 1_555 M MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc8 J O1B ATP . A ATP 408 1_555 M MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc9 J O1A ATP . A ATP 408 1_555 M MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc10 L MG MG . B MG 401 1_555 T O1B ATP . B ATP 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc11 L MG MG . B MG 401 1_555 T O3B ATP . B ATP 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc12 L MG MG . B MG 401 1_555 T O1A ATP . B ATP 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 107 n n PG O2G ATP sing 108 n n PG O3G ATP sing 109 n n PG O3B ATP sing 110 n n O2G HOG2 ATP sing 111 n n O3G HOG3 ATP sing 112 n n PB O1B ATP doub 113 n n PB O2B ATP sing 114 n n PB O3B ATP sing 115 n n PB O3A ATP sing 116 n n O2B HOB2 ATP sing 117 n n PA O1A ATP doub 118 n n PA O2A ATP sing 119 n n PA O3A ATP sing 120 n n PA O5' ATP sing 121 n n O2A HOA2 ATP sing 122 n n O5' C5' ATP sing 123 n n C5' C4' ATP sing 124 n n C5' "H5'1" ATP sing 125 n n C5' "H5'2" ATP sing 126 n n C4' O4' ATP sing 127 n n C4' C3' ATP sing 128 n n C4' H4' ATP sing 129 n n O4' C1' ATP sing 130 n n C3' O3' ATP sing 131 n n C3' C2' ATP sing 132 n n C3' H3' ATP sing 133 n n O3' HO3' ATP sing 134 n n C2' O2' ATP sing 135 n n C2' C1' ATP sing 136 n n C2' H2' ATP sing 137 n n O2' HO2' ATP sing 138 n n C1' N9 ATP sing 139 n n C1' H1' ATP sing 140 n n N9 C8 ATP sing 141 n y N9 C4 ATP sing 142 n y C8 N7 ATP doub 143 n y C8 H8 ATP sing 144 n n N7 C5 ATP sing 145 n y C5 C6 ATP sing 146 n y C5 C4 ATP doub 147 n y C6 N6 ATP sing 148 n n C6 N1 ATP doub 149 n y N6 HN61 ATP sing 150 n n N6 HN62 ATP sing 151 n n N1 C2 ATP sing 152 n y C2 N3 ATP doub 153 n y C2 H2 ATP sing 154 n n N3 C4 ATP sing 155 n y # _atom_sites.entry_id 7M1T _atom_sites.fract_transf_matrix[1][1] 0.01638 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008426 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 401 4 MG MG . D 3 SO4 A 1 402 2 SO4 SO4 . E 4 UMQ A 1 403 2 UMQ UMQ . F 4 UMQ A 1 404 3 UMQ UMQ . G 4 UMQ A 1 405 4 UMQ UMQ . H 4 UMQ A 1 406 5 UMQ UMQ . I 4 UMQ A 1 407 6 UMQ UMQ . J 5 ATP A 1 408 1 ATP ATP . K 6 1PE A 1 409 1 1PE 1PE . L 2 MG B 1 401 1 MG MG . M 2 MG B 1 402 2 MG MG . N 3 SO4 B 1 403 1 SO4 SO4 . O 4 UMQ B 1 404 1 UMQ UMQ . P 4 UMQ B 1 405 7 UMQ UMQ . Q 4 UMQ B 1 406 8 UMQ UMQ . R 4 UMQ B 1 407 9 UMQ UMQ . S 4 UMQ B 1 408 10 UMQ UMQ . T 5 ATP B 1 409 2 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . T 5 76.492 111.327 67.154 1 21.47 ? PG ATP 409 B 1 HETATM 2 O O1G ATP . . . T 5 75.045 110.99 67.42 1 27.92 ? O1G ATP 409 B 1 HETATM 3 O O2G ATP . . . T 5 77.092 111.984 68.374 1 24.32 ? O2G ATP 409 B 1 HETATM 4 O O3G ATP . . . T 5 76.587 112.263 65.974 1 56.14 ? O3G ATP 409 B 1 HETATM 5 P PB ATP . . . T 5 78.853 109.935 66.205 1 12.99 ? PB ATP 409 B 1 HETATM 6 O O1B ATP . . . T 5 78.835 110.342 64.752 1 40.6 ? O1B ATP 409 B 1 HETATM 7 O O2B ATP . . . T 5 79.745 110.868 66.987 1 22.19 ? O2B ATP 409 B 1 HETATM 8 O O3B ATP . . . T 5 77.324 109.952 66.811 1 12.49 ? O3B ATP 409 B 1 HETATM 9 P PA ATP . . . T 5 78.266 107.19 66.317 1 21.33 ? PA ATP 409 B 1 HETATM 10 O O1A ATP . . . T 5 77.39 107.369 65.101 1 25.46 ? O1A ATP 409 B 1 HETATM 11 O O2A ATP . . . T 5 77.414 107.299 67.556 1 21.76 ? O2A ATP 409 B 1 HETATM 12 O O3A ATP . . . T 5 79.385 108.39 66.334 1 12.39 ? O3A ATP 409 B 1 HETATM 13 O O5' ATP . . . T 5 78.993 105.718 66.266 1 18.23 ? O5' ATP 409 B 1 HETATM 14 C C5' ATP . . . T 5 79.041 105.038 65.045 1 11.56 ? C5' ATP 409 B 1 HETATM 15 C C4' ATP . . . T 5 80.39 104.285 64.983 1 11.61 ? C4' ATP 409 B 1 HETATM 16 O O4' ATP . . . T 5 81.364 105.143 65.079 1 11.98 ? O4' ATP 409 B 1 HETATM 17 C C3' ATP . . . T 5 80.515 103.365 66.213 1 12.41 ? C3' ATP 409 B 1 HETATM 18 O O3' ATP . . . T 5 80.332 102.072 65.854 1 23.44 ? O3' ATP 409 B 1 HETATM 19 C C2' ATP . . . T 5 81.95 103.544 66.736 1 14.53 ? C2' ATP 409 B 1 HETATM 20 O O2' ATP . . . T 5 82.687 102.263 66.533 1 19.78 ? O2' ATP 409 B 1 HETATM 21 C C1' ATP . . . T 5 82.502 104.486 66.021 1 17.06 ? C1' ATP 409 B 1 HETATM 22 N N9 ATP . . . T 5 83.051 105.499 66.885 1 20.33 ? N9 ATP 409 B 1 HETATM 23 C C8 ATP . . . T 5 82.414 106.426 67.607 1 19.01 ? C8 ATP 409 B 1 HETATM 24 N N7 ATP . . . T 5 83.333 107.151 68.25 1 18.79 ? N7 ATP 409 B 1 HETATM 25 C C5 ATP . . . T 5 84.539 106.67 67.92 1 27.48 ? C5 ATP 409 B 1 HETATM 26 C C6 ATP . . . T 5 85.815 107.034 68.286 1 29.65 ? C6 ATP 409 B 1 HETATM 27 N N6 ATP . . . T 5 86.3 108.079 69.166 1 17.87 ? N6 ATP 409 B 1 HETATM 28 N N1 ATP . . . T 5 86.855 106.376 67.803 1 34.11 ? N1 ATP 409 B 1 HETATM 29 C C2 ATP . . . T 5 86.665 105.345 66.945 1 31.24 ? C2 ATP 409 B 1 HETATM 30 N N3 ATP . . . T 5 85.418 104.983 66.584 1 26.2 ? N3 ATP 409 B 1 HETATM 31 C C4 ATP . . . T 5 84.362 105.649 67.079 1 25.55 ? C4 ATP 409 B 1 HETATM 32 H "H5'1" ATP . . . T 5 78.981 105.67 64.312 1 11.6 ? "H5'1" ATP 409 B 1 HETATM 33 H "H5'2" ATP . . . T 5 78.306 104.407 64.989 1 11.6 ? "H5'2" ATP 409 B 1 HETATM 34 H H4' ATP . . . T 5 80.477 103.767 64.167 1 10.73 ? H4' ATP 409 B 1 HETATM 35 H H3' ATP . . . T 5 79.872 103.639 66.885 1 15.53 ? H3' ATP 409 B 1 HETATM 36 H HO3' ATP . . . T 5 80.571 101.958 65.047 1 28.76 ? HO3' ATP 409 B 1 HETATM 37 H H2' ATP . . . T 5 81.937 103.819 67.666 1 18.08 ? H2' ATP 409 B 1 HETATM 38 H HO2' ATP . . . T 5 82.323 101.832 65.896 1 24.38 ? HO2' ATP 409 B 1 HETATM 39 H H1' ATP . . . T 5 83.181 104.083 65.458 1 21.11 ? H1' ATP 409 B 1 HETATM 40 H H8 ATP . . . T 5 81.492 106.545 67.653 1 23.45 ? H8 ATP 409 B 1 HETATM 41 H HN61 ATP . . . T 5 85.821 108.78 69.302 1 22.08 ? HN61 ATP 409 B 1 HETATM 42 H HN62 ATP . . . T 5 87.065 107.998 69.551 1 22.08 ? HN62 ATP 409 B 1 HETATM 43 H H2 ATP . . . T 5 87.398 104.886 66.604 1 38.13 ? H2 ATP 409 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #