data_7M20
#
_model_server_result.job_id            BCVwFeMU08oboDaqqclKIQ 
_model_server_result.datetime_utc      '2025-01-02 17:49:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7m20 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FA","auth_seq_id":501}' 
#
_entry.id    7M20 
#
_exptl.entry_id    7M20 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              655.178 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Cryptophycin 1' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 T N N 
? 4 W N N 
? 4 Z N N 
? 4 CA N N 
? 4 FA N N 
? 4 IA N N 
? 4 LA N N 
? 4 OA N N 
? 4 RA N N 
#
_chem_comp.formula           'C35 H43 Cl N2 O8' 
_chem_comp.formula_weight    655.178 
_chem_comp.id                YNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Cryptophycin 1' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (3S,6R,10S,13E,16S)-10-[(3-chloro-4-methoxyphenyl)methyl]-6-methyl-3-(2-methylpropyl)-16-{(1S)-1-[(2R,3R)-3-phenyloxiran-2-yl]ethyl}-1,4-dioxa-8,11-diazacyclohexadec-13-ene-2,5,9,12-tetrone 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 C24 YNP doub 469 n y 
C25 C26 YNP sing 470 n y 
C24 C23 YNP sing 471 n y 
C26 C27 YNP doub 472 n y 
C23 C22 YNP doub 473 n y 
C27 C22 YNP sing 474 n y 
C22 C21 YNP sing 475 n n 
C17 C15 YNP sing 476 n n 
C16 C15 YNP sing 477 n n 
C21 O7 YNP sing 478 n n 
C21 C20 YNP sing 479 n n 
C15 C14 YNP sing 480 n n 
O7 C20 YNP sing 481 n n 
C20 C18 YNP sing 482 n n 
C14 C12 YNP sing 483 n n 
O4 C11 YNP doub 484 n n 
C12 C11 YNP sing 485 n n 
C12 O5 YNP sing 486 n n 
C11 O3 YNP sing 487 n n 
C18 C10 YNP sing 488 n n 
C18 C19 YNP sing 489 n n 
O3 C10 YNP sing 490 n n 
C10 C9 YNP sing 491 n n 
C49 C2 YNP sing 492 n n 
O5 C13 YNP sing 493 n n 
C13 C2 YNP sing 494 n n 
C13 O6 YNP doub 495 n n 
C2 C3 YNP sing 496 n n 
C9 C8 YNP sing 497 n n 
C3 N1 YNP sing 498 n n 
C8 C7 YNP doub 499 e n 
C7 C6 YNP sing 500 n n 
N1 C4 YNP sing 501 n n 
C6 N2 YNP sing 502 n n 
C6 O2 YNP doub 503 n n 
N2 C5 YNP sing 504 n n 
C4 C5 YNP sing 505 n n 
C4 O1 YNP doub 506 n n 
C5 C28 YNP sing 507 n n 
C34 C33 YNP doub 508 n y 
C34 C29 YNP sing 509 n y 
C28 C29 YNP sing 510 n n 
C33 C32 YNP sing 511 n y 
C29 C30 YNP doub 512 n y 
C32 O8 YNP sing 513 n n 
C32 C31 YNP doub 514 n y 
C30 C31 YNP sing 515 n y 
O8 C35 YNP sing 516 n n 
C31 CL1 YNP sing 517 n n 
N1 H1 YNP sing 518 n n 
C2 H2 YNP sing 519 n n 
C5 H3 YNP sing 520 n n 
N2 H4 YNP sing 521 n n 
C7 H5 YNP sing 522 n n 
C8 H6 YNP sing 523 n n 
C10 H7 YNP sing 524 n n 
C12 H8 YNP sing 525 n n 
C14 H9 YNP sing 526 n n 
C14 H10 YNP sing 527 n n 
C15 H11 YNP sing 528 n n 
C16 H12 YNP sing 529 n n 
C16 H13 YNP sing 530 n n 
C16 H14 YNP sing 531 n n 
C17 H15 YNP sing 532 n n 
C17 H16 YNP sing 533 n n 
C17 H17 YNP sing 534 n n 
C18 H18 YNP sing 535 n n 
C19 H19 YNP sing 536 n n 
C19 H20 YNP sing 537 n n 
C19 H21 YNP sing 538 n n 
C20 H22 YNP sing 539 n n 
C21 H23 YNP sing 540 n n 
C23 H24 YNP sing 541 n n 
C24 H25 YNP sing 542 n n 
C25 H26 YNP sing 543 n n 
C26 H27 YNP sing 544 n n 
C27 H28 YNP sing 545 n n 
C28 H29 YNP sing 546 n n 
C28 H30 YNP sing 547 n n 
C3 H31 YNP sing 548 n n 
C3 H32 YNP sing 549 n n 
C30 H33 YNP sing 550 n n 
C33 H34 YNP sing 551 n n 
C34 H35 YNP sing 552 n n 
C35 H36 YNP sing 553 n n 
C35 H37 YNP sing 554 n n 
C35 H38 YNP sing 555 n n 
C49 H39 YNP sing 556 n n 
C49 H40 YNP sing 557 n n 
C49 H41 YNP sing 558 n n 
C9 H42 YNP sing 559 n n 
C9 H43 YNP sing 560 n n 
#
_atom_sites.entry_id                     7M20 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 3 GDP B 1 1101 1101 GDP GDP . 
T 4 YNP A 1 501 1102 YNP YNP . 
U 5 GTP A 1 502 601 GTP GTP . 
V 3 GDP D 1 1101 1101 GDP GDP . 
W 4 YNP C 1 501 1102 YNP YNP . 
X 5 GTP C 1 502 601 GTP GTP . 
Y 3 GDP F 1 1101 1101 GDP GDP . 
Z 4 YNP E 1 501 1102 YNP YNP . 
AA 5 GTP E 1 502 601 GTP GTP . 
BA 3 GDP H 1 1101 1101 GDP GDP . 
CA 4 YNP G 1 501 1102 YNP YNP . 
DA 5 GTP G 1 502 601 GTP GTP . 
EA 3 GDP J 1 1101 1101 GDP GDP . 
FA 4 YNP I 1 501 1102 YNP YNP . 
GA 5 GTP I 1 502 601 GTP GTP . 
HA 3 GDP L 1 1101 1101 GDP GDP . 
IA 4 YNP K 1 501 1102 YNP YNP . 
JA 5 GTP K 1 502 601 GTP GTP . 
KA 3 GDP N 1 1101 1101 GDP GDP . 
LA 4 YNP M 1 501 1102 YNP YNP . 
MA 5 GTP M 1 502 601 GTP GTP . 
NA 3 GDP P 1 1101 1101 GDP GDP . 
OA 4 YNP O 1 501 1102 YNP YNP . 
PA 5 GTP O 1 502 601 GTP GTP . 
QA 3 GDP R 1 1101 1101 GDP GDP . 
RA 4 YNP Q 1 501 1102 YNP YNP . 
SA 5 GTP Q 1 502 601 GTP GTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 YNP . . . FA 4 197.261 265.242 317.73 1 93.23 ? N1 YNP 501 I 1 
HETATM 2 C C2 YNP . . . FA 4 196.773 264.726 320.082 1 93.23 ? C2 YNP 501 I 1 
HETATM 3 C C4 YNP . . . FA 4 198.23 264.831 316.725 1 93.23 ? C4 YNP 501 I 1 
HETATM 4 C C5 YNP . . . FA 4 199.201 265.831 316.091 1 93.23 ? C5 YNP 501 I 1 
HETATM 5 C C6 YNP . . . FA 4 201.632 265.523 317.556 1 93.23 ? C6 YNP 501 I 1 
HETATM 6 O O2 YNP . . . FA 4 202.703 266.423 317.531 1 93.23 ? O2 YNP 501 I 1 
HETATM 7 N N2 YNP . . . FA 4 200.385 265.941 316.935 1 93.23 ? N2 YNP 501 I 1 
HETATM 8 O O4 YNP . . . FA 4 201.618 264.084 322.322 1 93.23 ? O4 YNP 501 I 1 
HETATM 9 C C7 YNP . . . FA 4 201.757 264.13 318.19 1 93.23 ? C7 YNP 501 I 1 
HETATM 10 O O6 YNP . . . FA 4 198.464 263.076 319.966 1 93.23 ? O6 YNP 501 I 1 
HETATM 11 C C8 YNP . . . FA 4 202.678 263.769 319.075 1 93.23 ? C8 YNP 501 I 1 
HETATM 12 C C10 YNP . . . FA 4 203.451 265.367 320.946 1 93.23 ? C10 YNP 501 I 1 
HETATM 13 C C11 YNP . . . FA 4 201.22 264.995 321.675 1 93.23 ? C11 YNP 501 I 1 
HETATM 14 C C12 YNP . . . FA 4 199.727 265.333 321.648 1 93.23 ? C12 YNP 501 I 1 
HETATM 15 C C13 YNP . . . FA 4 198.225 264.23 320.126 1 93.23 ? C13 YNP 501 I 1 
HETATM 16 C C14 YNP . . . FA 4 198.897 264.542 322.664 1 93.23 ? C14 YNP 501 I 1 
HETATM 17 C C15 YNP . . . FA 4 198.324 265.441 323.763 1 93.23 ? C15 YNP 501 I 1 
HETATM 18 C C16 YNP . . . FA 4 198.931 266.844 323.759 1 93.23 ? C16 YNP 501 I 1 
HETATM 19 C C17 YNP . . . FA 4 196.795 265.459 323.774 1 93.23 ? C17 YNP 501 I 1 
HETATM 20 C C18 YNP . . . FA 4 204.289 266.64 321.113 1 93.23 ? C18 YNP 501 I 1 
HETATM 21 C C19 YNP . . . FA 4 205.393 266.766 320.062 1 93.23 ? C19 YNP 501 I 1 
HETATM 22 C C20 YNP . . . FA 4 204.782 266.903 322.54 1 93.23 ? C20 YNP 501 I 1 
HETATM 23 C C21 YNP . . . FA 4 203.88 266.201 323.647 1 93.23 ? C21 YNP 501 I 1 
HETATM 24 C C22 YNP . . . FA 4 203.38 265.697 325.005 1 93.23 ? C22 YNP 501 I 1 
HETATM 25 C C23 YNP . . . FA 4 204.284 265.39 326.012 1 93.23 ? C23 YNP 501 I 1 
HETATM 26 C C24 YNP . . . FA 4 203.823 264.936 327.245 1 93.23 ? C24 YNP 501 I 1 
HETATM 27 C C25 YNP . . . FA 4 202.453 264.798 327.464 1 93.23 ? C25 YNP 501 I 1 
HETATM 28 C C26 YNP . . . FA 4 201.557 265.111 326.452 1 93.23 ? C26 YNP 501 I 1 
HETATM 29 C C27 YNP . . . FA 4 202.026 265.56 325.234 1 93.23 ? C27 YNP 501 I 1 
HETATM 30 C C28 YNP . . . FA 4 199.583 265.444 314.655 1 93.23 ? C28 YNP 501 I 1 
HETATM 31 C C29 YNP . . . FA 4 199.961 266.657 313.794 1 93.23 ? C29 YNP 501 I 1 
HETATM 32 C C3 YNP . . . FA 4 196.484 265.647 318.892 1 93.23 ? C3 YNP 501 I 1 
HETATM 33 C C30 YNP . . . FA 4 200.009 266.585 312.397 1 93.23 ? C30 YNP 501 I 1 
HETATM 34 C C31 YNP . . . FA 4 200.357 267.716 311.653 1 93.23 ? C31 YNP 501 I 1 
HETATM 35 C C32 YNP . . . FA 4 200.66 268.909 312.292 1 93.23 ? C32 YNP 501 I 1 
HETATM 36 C C33 YNP . . . FA 4 200.612 268.986 313.661 1 93.23 ? C33 YNP 501 I 1 
HETATM 37 C C34 YNP . . . FA 4 200.269 267.871 314.392 1 93.23 ? C34 YNP 501 I 1 
HETATM 38 C C35 YNP . . . FA 4 201.033 271.211 312.338 1 93.23 ? C35 YNP 501 I 1 
HETATM 39 C C49 YNP . . . FA 4 195.755 263.596 320.224 1 93.23 ? C49 YNP 501 I 1 
HETATM 40 C C9 YNP . . . FA 4 203.785 264.681 319.614 1 93.23 ? C9 YNP 501 I 1 
HETATM 41 O O1 YNP . . . FA 4 198.278 263.483 316.348 1 93.23 ? O1 YNP 501 I 1 
HETATM 42 O O3 YNP . . . FA 4 202.105 265.774 320.908 1 93.23 ? O3 YNP 501 I 1 
HETATM 43 O O5 YNP . . . FA 4 199.272 265.147 320.327 1 93.23 ? O5 YNP 501 I 1 
HETATM 44 O O7 YNP . . . FA 4 203.784 267.509 323.204 1 93.23 ? O7 YNP 501 I 1 
HETATM 45 O O8 YNP . . . FA 4 201.012 270.049 311.558 1 93.23 ? O8 YNP 501 I 1 
HETATM 46 CL CL1 YNP . . . FA 4 200.42 267.623 309.87 1 93.23 ? CL1 YNP 501 I 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           125 
_model_server_stats.create_model_time_ms    314 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           46 
#