data_7M20
#
_model_server_result.job_id            Cr55HsPA9mf87F4NFDLX4w 
_model_server_result.datetime_utc      '2025-01-02 17:35:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7m20 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"RA","auth_seq_id":501}' 
#
_entry.id    7M20 
#
_exptl.entry_id    7M20 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              655.178 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Cryptophycin 1' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 T N N 
? 4 W N N 
? 4 Z N N 
? 4 CA N N 
? 4 FA N N 
? 4 IA N N 
? 4 LA N N 
? 4 OA N N 
? 4 RA N N 
#
_chem_comp.formula           'C35 H43 Cl N2 O8' 
_chem_comp.formula_weight    655.178 
_chem_comp.id                YNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Cryptophycin 1' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (3S,6R,10S,13E,16S)-10-[(3-chloro-4-methoxyphenyl)methyl]-6-methyl-3-(2-methylpropyl)-16-{(1S)-1-[(2R,3R)-3-phenyloxiran-2-yl]ethyl}-1,4-dioxa-8,11-diazacyclohexadec-13-ene-2,5,9,12-tetrone 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 C24 YNP doub 469 n y 
C25 C26 YNP sing 470 n y 
C24 C23 YNP sing 471 n y 
C26 C27 YNP doub 472 n y 
C23 C22 YNP doub 473 n y 
C27 C22 YNP sing 474 n y 
C22 C21 YNP sing 475 n n 
C17 C15 YNP sing 476 n n 
C16 C15 YNP sing 477 n n 
C21 O7 YNP sing 478 n n 
C21 C20 YNP sing 479 n n 
C15 C14 YNP sing 480 n n 
O7 C20 YNP sing 481 n n 
C20 C18 YNP sing 482 n n 
C14 C12 YNP sing 483 n n 
O4 C11 YNP doub 484 n n 
C12 C11 YNP sing 485 n n 
C12 O5 YNP sing 486 n n 
C11 O3 YNP sing 487 n n 
C18 C10 YNP sing 488 n n 
C18 C19 YNP sing 489 n n 
O3 C10 YNP sing 490 n n 
C10 C9 YNP sing 491 n n 
C49 C2 YNP sing 492 n n 
O5 C13 YNP sing 493 n n 
C13 C2 YNP sing 494 n n 
C13 O6 YNP doub 495 n n 
C2 C3 YNP sing 496 n n 
C9 C8 YNP sing 497 n n 
C3 N1 YNP sing 498 n n 
C8 C7 YNP doub 499 e n 
C7 C6 YNP sing 500 n n 
N1 C4 YNP sing 501 n n 
C6 N2 YNP sing 502 n n 
C6 O2 YNP doub 503 n n 
N2 C5 YNP sing 504 n n 
C4 C5 YNP sing 505 n n 
C4 O1 YNP doub 506 n n 
C5 C28 YNP sing 507 n n 
C34 C33 YNP doub 508 n y 
C34 C29 YNP sing 509 n y 
C28 C29 YNP sing 510 n n 
C33 C32 YNP sing 511 n y 
C29 C30 YNP doub 512 n y 
C32 O8 YNP sing 513 n n 
C32 C31 YNP doub 514 n y 
C30 C31 YNP sing 515 n y 
O8 C35 YNP sing 516 n n 
C31 CL1 YNP sing 517 n n 
N1 H1 YNP sing 518 n n 
C2 H2 YNP sing 519 n n 
C5 H3 YNP sing 520 n n 
N2 H4 YNP sing 521 n n 
C7 H5 YNP sing 522 n n 
C8 H6 YNP sing 523 n n 
C10 H7 YNP sing 524 n n 
C12 H8 YNP sing 525 n n 
C14 H9 YNP sing 526 n n 
C14 H10 YNP sing 527 n n 
C15 H11 YNP sing 528 n n 
C16 H12 YNP sing 529 n n 
C16 H13 YNP sing 530 n n 
C16 H14 YNP sing 531 n n 
C17 H15 YNP sing 532 n n 
C17 H16 YNP sing 533 n n 
C17 H17 YNP sing 534 n n 
C18 H18 YNP sing 535 n n 
C19 H19 YNP sing 536 n n 
C19 H20 YNP sing 537 n n 
C19 H21 YNP sing 538 n n 
C20 H22 YNP sing 539 n n 
C21 H23 YNP sing 540 n n 
C23 H24 YNP sing 541 n n 
C24 H25 YNP sing 542 n n 
C25 H26 YNP sing 543 n n 
C26 H27 YNP sing 544 n n 
C27 H28 YNP sing 545 n n 
C28 H29 YNP sing 546 n n 
C28 H30 YNP sing 547 n n 
C3 H31 YNP sing 548 n n 
C3 H32 YNP sing 549 n n 
C30 H33 YNP sing 550 n n 
C33 H34 YNP sing 551 n n 
C34 H35 YNP sing 552 n n 
C35 H36 YNP sing 553 n n 
C35 H37 YNP sing 554 n n 
C35 H38 YNP sing 555 n n 
C49 H39 YNP sing 556 n n 
C49 H40 YNP sing 557 n n 
C49 H41 YNP sing 558 n n 
C9 H42 YNP sing 559 n n 
C9 H43 YNP sing 560 n n 
#
_atom_sites.entry_id                     7M20 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 3 GDP B 1 1101 1101 GDP GDP . 
T 4 YNP A 1 501 1102 YNP YNP . 
U 5 GTP A 1 502 601 GTP GTP . 
V 3 GDP D 1 1101 1101 GDP GDP . 
W 4 YNP C 1 501 1102 YNP YNP . 
X 5 GTP C 1 502 601 GTP GTP . 
Y 3 GDP F 1 1101 1101 GDP GDP . 
Z 4 YNP E 1 501 1102 YNP YNP . 
AA 5 GTP E 1 502 601 GTP GTP . 
BA 3 GDP H 1 1101 1101 GDP GDP . 
CA 4 YNP G 1 501 1102 YNP YNP . 
DA 5 GTP G 1 502 601 GTP GTP . 
EA 3 GDP J 1 1101 1101 GDP GDP . 
FA 4 YNP I 1 501 1102 YNP YNP . 
GA 5 GTP I 1 502 601 GTP GTP . 
HA 3 GDP L 1 1101 1101 GDP GDP . 
IA 4 YNP K 1 501 1102 YNP YNP . 
JA 5 GTP K 1 502 601 GTP GTP . 
KA 3 GDP N 1 1101 1101 GDP GDP . 
LA 4 YNP M 1 501 1102 YNP YNP . 
MA 5 GTP M 1 502 601 GTP GTP . 
NA 3 GDP P 1 1101 1101 GDP GDP . 
OA 4 YNP O 1 501 1102 YNP YNP . 
PA 5 GTP O 1 502 601 GTP GTP . 
QA 3 GDP R 1 1101 1101 GDP GDP . 
RA 4 YNP Q 1 501 1102 YNP YNP . 
SA 5 GTP Q 1 502 601 GTP GTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 YNP . . . RA 4 449.459 326.24 317.709 1 93.23 ? N1 YNP 501 Q 1 
HETATM 2 C C2 YNP . . . RA 4 450.064 326.539 320.067 1 93.23 ? C2 YNP 501 Q 1 
HETATM 3 C C4 YNP . . . RA 4 448.726 326.964 316.683 1 93.23 ? C4 YNP 501 Q 1 
HETATM 4 C C5 YNP . . . RA 4 447.452 326.39 316.058 1 93.23 ? C5 YNP 501 Q 1 
HETATM 5 C C6 YNP . . . RA 4 445.281 327.484 317.552 1 93.23 ? C6 YNP 501 Q 1 
HETATM 6 O O2 YNP . . . RA 4 443.977 326.976 317.551 1 93.23 ? O2 YNP 501 Q 1 
HETATM 7 N N2 YNP . . . RA 4 446.319 326.68 316.927 1 93.23 ? N2 YNP 501 Q 1 
HETATM 8 O O4 YNP . . . RA 4 445.745 328.881 322.277 1 93.23 ? O4 YNP 501 Q 1 
HETATM 9 C C7 YNP . . . RA 4 445.62 328.85 318.166 1 93.23 ? C7 YNP 501 Q 1 
HETATM 10 O O6 YNP . . . RA 4 449.124 328.704 319.922 1 93.23 ? O6 YNP 501 Q 1 
HETATM 11 C C8 YNP . . . RA 4 444.865 329.516 319.03 1 93.23 ? C8 YNP 501 Q 1 
HETATM 12 C C10 YNP . . . RA 4 443.582 328.299 320.908 1 93.23 ? C10 YNP 501 Q 1 
HETATM 13 C C11 YNP . . . RA 4 445.806 327.884 321.637 1 93.23 ? C11 YNP 501 Q 1 
HETATM 14 C C12 YNP . . . RA 4 447.099 327.064 321.604 1 93.23 ? C12 YNP 501 Q 1 
HETATM 15 C C13 YNP . . . RA 4 448.907 327.548 320.09 1 93.23 ? C13 YNP 501 Q 1 
HETATM 16 C C14 YNP . . . RA 4 448.148 327.535 322.618 1 93.23 ? C14 YNP 501 Q 1 
HETATM 17 C C15 YNP . . . RA 4 448.408 326.495 323.71 1 93.23 ? C15 YNP 501 Q 1 
HETATM 18 C C16 YNP . . . RA 4 447.401 325.344 323.687 1 93.23 ? C16 YNP 501 Q 1 
HETATM 19 C C17 YNP . . . RA 4 449.858 326.011 323.734 1 93.23 ? C17 YNP 501 Q 1 
HETATM 20 C C18 YNP . . . RA 4 442.343 327.413 321.084 1 93.23 ? C18 YNP 501 Q 1 
HETATM 21 C C19 YNP . . . RA 4 441.248 327.721 320.061 1 93.23 ? C19 YNP 501 Q 1 
HETATM 22 C C20 YNP . . . RA 4 441.815 327.329 322.52 1 93.23 ? C20 YNP 501 Q 1 
HETATM 23 C C21 YNP . . . RA 4 442.921 327.686 323.605 1 93.23 ? C21 YNP 501 Q 1 
HETATM 24 C C22 YNP . . . RA 4 443.593 327.992 324.947 1 93.23 ? C22 YNP 501 Q 1 
HETATM 25 C C23 YNP . . . RA 4 442.893 328.657 325.943 1 93.23 ? C23 YNP 501 Q 1 
HETATM 26 C C24 YNP . . . RA 4 443.507 328.93 327.163 1 93.23 ? C24 YNP 501 Q 1 
HETATM 27 C C25 YNP . . . RA 4 444.824 328.526 327.378 1 93.23 ? C25 YNP 501 Q 1 
HETATM 28 C C26 YNP . . . RA 4 445.515 327.858 326.377 1 93.23 ? C26 YNP 501 Q 1 
HETATM 29 C C27 YNP . . . RA 4 444.895 327.594 325.174 1 93.23 ? C27 YNP 501 Q 1 
HETATM 30 C C28 YNP . . . RA 4 447.205 326.904 314.633 1 93.23 ? C28 YNP 501 Q 1 
HETATM 31 C C29 YNP . . . RA 4 446.457 325.877 313.774 1 93.23 ? C29 YNP 501 Q 1 
HETATM 32 C C3 YNP . . . RA 4 449.996 325.569 318.883 1 93.23 ? C3 YNP 501 Q 1 
HETATM 33 C C30 YNP . . . RA 4 446.461 325.934 312.375 1 93.23 ? C30 YNP 501 Q 1 
HETATM 34 C C31 YNP . . . RA 4 445.765 324.972 311.638 1 93.23 ? C31 YNP 501 Q 1 
HETATM 35 C C32 YNP . . . RA 4 445.067 323.963 312.287 1 93.23 ? C32 YNP 501 Q 1 
HETATM 36 C C33 YNP . . . RA 4 445.062 323.902 313.657 1 93.23 ? C33 YNP 501 Q 1 
HETATM 37 C C34 YNP . . . RA 4 445.748 324.85 314.38 1 93.23 ? C34 YNP 501 Q 1 
HETATM 38 C C35 YNP . . . RA 4 444.036 321.878 312.356 1 93.23 ? C35 YNP 501 Q 1 
HETATM 39 C C49 YNP . . . RA 4 451.434 327.201 320.213 1 93.23 ? C49 YNP 501 Q 1 
HETATM 40 C C9 YNP . . . RA 4 443.512 329.039 319.565 1 93.23 ? C9 YNP 501 Q 1 
HETATM 41 O O1 YNP . . . RA 4 449.197 328.219 316.274 1 93.23 ? O1 YNP 501 Q 1 
HETATM 42 O O3 YNP . . . RA 4 444.699 327.444 320.887 1 93.23 ? O3 YNP 501 Q 1 
HETATM 43 O O5 YNP . . . RA 4 447.589 327.099 320.283 1 93.23 ? O5 YNP 501 Q 1 
HETATM 44 O O7 YNP . . . RA 4 442.56 326.422 323.172 1 93.23 ? O7 YNP 501 Q 1 
HETATM 45 O O8 YNP . . . RA 4 444.361 322.989 311.569 1 93.23 ? O8 YNP 501 Q 1 
HETATM 46 CL CL1 YNP . . . RA 4 445.768 325.045 309.853 1 93.23 ? CL1 YNP 501 Q 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    388 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           46 
#