data_7M2I
#
_model_server_result.job_id            fxE34kfW4aMUCn-AdpTM2g 
_model_server_result.datetime_utc      '2024-11-24 14:33:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7m2i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2001}' 
#
_entry.id    7M2I 
#
_exptl.entry_id    7M2I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              144.254 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NONAN-1-OL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7M2I 
_cell.length_a            155.25 
_cell.length_b            155.25 
_cell.length_c            74.415 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7M2I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 145 A CYS 145 1_555 A SG CYS 200 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf3 B SG CYS 23 B CYS 23 1_555 B SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 B SG CYS 134 B CYS 134 1_555 B SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 C SG CYS 3 C CYS 28 1_555 C SG CYS 93 C CYS 118 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 C O THR 50 C THR 75 1_555 G K K . C K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? 
metalc ? metalc2 C OG1 THR 50 C THR 75 1_555 G K K . C K 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? 
metalc ? metalc3 C O THR 50 C THR 75 1_555 G K K . C K 203 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? 
metalc ? metalc4 C OG1 THR 50 C THR 75 1_555 G K K . C K 203 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? 
metalc ? metalc5 C O THR 50 C THR 75 1_555 K K K . C K 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.131 ? 
metalc ? metalc6 C O THR 50 C THR 75 1_555 K K K . C K 207 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.131 ? 
metalc ? metalc7 C O VAL 51 C VAL 76 1_555 K K K . C K 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? 
metalc ? metalc8 C O VAL 51 C VAL 76 1_555 K K K . C K 207 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? 
metalc ? metalc9 C O GLY 52 C GLY 77 1_555 H K K . C K 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.188 ? 
metalc ? metalc10 C O GLY 52 C GLY 77 1_555 H K K . C K 204 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.188 ? 
metalc ? metalc11 C O TYR 53 C TYR 78 1_555 H K K . C K 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc12 C O TYR 53 C TYR 78 1_555 H K K . C K 204 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc13 F K K . C K 202 1_555 N O HOH . C HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? 
metalc ? metalc14 F K K . C K 202 1_555 N O HOH . C HOH 302 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? 
metalc ? metalc15 J K K . C K 206 1_555 N O HOH . C HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? 
metalc ? metalc16 J K K . C K 206 1_555 N O HOH . C HOH 304 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? 
#
_chem_comp.formula           'C9 H20 O' 
_chem_comp.formula_weight    144.254 
_chem_comp.id                F09 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NONAN-1-OL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 F09 sing 163 n n 
C1 H11 F09 sing 164 n n 
C1 H12 F09 sing 165 n n 
C1 H13 F09 sing 166 n n 
C2 C3 F09 sing 167 n n 
C2 H21 F09 sing 168 n n 
C2 H22 F09 sing 169 n n 
C3 C4 F09 sing 170 n n 
C3 H31 F09 sing 171 n n 
C3 H32 F09 sing 172 n n 
C4 C5 F09 sing 173 n n 
C4 H41 F09 sing 174 n n 
C4 H42 F09 sing 175 n n 
C5 C6 F09 sing 176 n n 
C5 H51 F09 sing 177 n n 
C5 H52 F09 sing 178 n n 
C6 C7 F09 sing 179 n n 
C6 H61 F09 sing 180 n n 
C6 H62 F09 sing 181 n n 
C7 C8 F09 sing 182 n n 
C7 H71 F09 sing 183 n n 
C7 H72 F09 sing 184 n n 
C8 C9 F09 sing 185 n n 
C8 H81 F09 sing 186 n n 
C8 H82 F09 sing 187 n n 
C9 OXT F09 sing 188 n n 
C9 H91 F09 sing 189 n n 
C9 H92 F09 sing 190 n n 
OXT HXT F09 sing 191 n n 
#
_atom_sites.entry_id                     7M2I 
_atom_sites.fract_transf_matrix[1][1]    0.006441 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006441 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013438 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 F09 A 1 2001 2001 F09 F09 . 
E 5 1EM C 1 201 2002 1EM 1EM . 
F 6 K C 1 202 1 K K . 
G 6 K C 1 203 2 K K . 
H 6 K C 1 204 3 K K . 
I 6 K C 1 205 4 K K . 
J 6 K C 1 206 5 K K . 
K 6 K C 1 207 6 K K . 
L 7 HOH A 1 2101 14 HOH HOH . 
L 7 HOH A 2 2102 15 HOH HOH . 
L 7 HOH A 3 2103 10 HOH HOH . 
L 7 HOH A 4 2104 48 HOH HOH . 
L 7 HOH A 5 2105 5 HOH HOH . 
L 7 HOH A 6 2106 9 HOH HOH . 
L 7 HOH A 7 2107 7 HOH HOH . 
L 7 HOH A 8 2108 12 HOH HOH . 
L 7 HOH A 9 2109 4 HOH HOH . 
L 7 HOH A 10 2110 44 HOH HOH . 
L 7 HOH A 11 2111 3 HOH HOH . 
L 7 HOH A 12 2112 49 HOH HOH . 
M 7 HOH B 1 301 16 HOH HOH . 
M 7 HOH B 2 302 47 HOH HOH . 
M 7 HOH B 3 303 19 HOH HOH . 
M 7 HOH B 4 304 20 HOH HOH . 
M 7 HOH B 5 305 17 HOH HOH . 
M 7 HOH B 6 306 18 HOH HOH . 
M 7 HOH B 7 307 46 HOH HOH . 
M 7 HOH B 8 308 28 HOH HOH . 
N 7 HOH C 1 301 43 HOH HOH . 
N 7 HOH C 2 302 42 HOH HOH . 
N 7 HOH C 3 303 32 HOH HOH . 
N 7 HOH C 4 304 34 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 F09 . . . D 4 1.726 24.997 -6.426 1 63.53 ? C1 F09 2001 A 1 
HETATM 2 C C2 F09 . . . D 4 0.543 25.534 -5.628 1 62.36 ? C2 F09 2001 A 1 
HETATM 3 C C3 F09 . . . D 4 0.909 25.473 -4.148 1 59.16 ? C3 F09 2001 A 1 
HETATM 4 C C4 F09 . . . D 4 -0.291 25.014 -3.328 1 62.17 ? C4 F09 2001 A 1 
HETATM 5 C C5 F09 . . . D 4 0.224 24.477 -1.996 1 56.15 ? C5 F09 2001 A 1 
HETATM 6 C C6 F09 . . . D 4 -0.87 24.602 -0.939 1 62.09 ? C6 F09 2001 A 1 
HETATM 7 C C7 F09 . . . D 4 -0.245 24.555 0.454 1 66.44 ? C7 F09 2001 A 1 
HETATM 8 C C8 F09 . . . D 4 0.595 23.288 0.597 1 72.62 ? C8 F09 2001 A 1 
HETATM 9 C C9 F09 . . . D 4 0.994 23.094 2.058 1 75.29 ? C9 F09 2001 A 1 
HETATM 10 O OXT F09 . . . D 4 1.675 21.877 2.195 1 82.19 ? OXT F09 2001 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#