data_7M2O # _model_server_result.job_id FHQt5PWlBdBE6hKloEPbNA _model_server_result.datetime_utc '2024-11-16 23:25:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m2o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7M2O # _exptl.entry_id 7M2O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M2O _cell.length_a 96.904 _cell.length_b 96.904 _cell.length_c 79.536 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M2O _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 92 n n N1 C10 FMN doub 93 n n C2 O2 FMN doub 94 n n C2 N3 FMN sing 95 n n N3 C4 FMN sing 96 n n N3 HN3 FMN sing 97 n n C4 O4 FMN doub 98 n n C4 C4A FMN sing 99 n n C4A N5 FMN doub 100 n n C4A C10 FMN sing 101 n n N5 C5A FMN sing 102 n n C5A C6 FMN doub 103 n y C5A C9A FMN sing 104 n y C6 C7 FMN sing 105 n y C6 H6 FMN sing 106 n n C7 C7M FMN sing 107 n n C7 C8 FMN doub 108 n y C7M HM71 FMN sing 109 n n C7M HM72 FMN sing 110 n n C7M HM73 FMN sing 111 n n C8 C8M FMN sing 112 n n C8 C9 FMN sing 113 n y C8M HM81 FMN sing 114 n n C8M HM82 FMN sing 115 n n C8M HM83 FMN sing 116 n n C9 C9A FMN doub 117 n y C9 H9 FMN sing 118 n n C9A N10 FMN sing 119 n n N10 C10 FMN sing 120 n n N10 C1' FMN sing 121 n n C1' C2' FMN sing 122 n n C1' "H1'1" FMN sing 123 n n C1' "H1'2" FMN sing 124 n n C2' O2' FMN sing 125 n n C2' C3' FMN sing 126 n n C2' H2' FMN sing 127 n n O2' HO2' FMN sing 128 n n C3' O3' FMN sing 129 n n C3' C4' FMN sing 130 n n C3' H3' FMN sing 131 n n O3' HO3' FMN sing 132 n n C4' O4' FMN sing 133 n n C4' C5' FMN sing 134 n n C4' H4' FMN sing 135 n n O4' HO4' FMN sing 136 n n C5' O5' FMN sing 137 n n C5' "H5'1" FMN sing 138 n n C5' "H5'2" FMN sing 139 n n O5' P FMN sing 140 n n P O1P FMN doub 141 n n P O2P FMN sing 142 n n P O3P FMN sing 143 n n O2P HOP2 FMN sing 144 n n O3P HOP3 FMN sing 145 n n # _atom_sites.entry_id 7M2O _atom_sites.fract_transf_matrix[1][1] 0.010319 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010319 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 364 FMN FMN . C 3 YOJ A 1 402 366 YOJ LIG . D 4 EDO A 1 403 571 EDO EDO . E 5 PEG A 1 404 586 PEG PEG . F 4 EDO A 1 405 588 EDO EDO . G 4 EDO A 1 406 596 EDO EDO . H 5 PEG A 1 407 597 PEG PEG . I 5 PEG A 1 408 599 PEG PEG . J 4 EDO A 1 409 600 EDO EDO . K 6 HOH A 1 501 573 HOH HOH . K 6 HOH A 2 502 535 HOH HOH . K 6 HOH A 3 503 466 HOH HOH . K 6 HOH A 4 504 505 HOH HOH . K 6 HOH A 5 505 506 HOH HOH . K 6 HOH A 6 506 548 HOH HOH . K 6 HOH A 7 507 520 HOH HOH . K 6 HOH A 8 508 542 HOH HOH . K 6 HOH A 9 509 491 HOH HOH . K 6 HOH A 10 510 494 HOH HOH . K 6 HOH A 11 511 558 HOH HOH . K 6 HOH A 12 512 497 HOH HOH . K 6 HOH A 13 513 508 HOH HOH . K 6 HOH A 14 514 552 HOH HOH . K 6 HOH A 15 515 461 HOH HOH . K 6 HOH A 16 516 394 HOH HOH . K 6 HOH A 17 517 545 HOH HOH . K 6 HOH A 18 518 431 HOH HOH . K 6 HOH A 19 519 489 HOH HOH . K 6 HOH A 20 520 405 HOH HOH . K 6 HOH A 21 521 583 HOH HOH . K 6 HOH A 22 522 495 HOH HOH . K 6 HOH A 23 523 421 HOH HOH . K 6 HOH A 24 524 572 HOH HOH . K 6 HOH A 25 525 451 HOH HOH . K 6 HOH A 26 526 575 HOH HOH . K 6 HOH A 27 527 383 HOH HOH . K 6 HOH A 28 528 384 HOH HOH . K 6 HOH A 29 529 593 HOH HOH . K 6 HOH A 30 530 509 HOH HOH . K 6 HOH A 31 531 412 HOH HOH . K 6 HOH A 32 532 381 HOH HOH . K 6 HOH A 33 533 463 HOH HOH . K 6 HOH A 34 534 531 HOH HOH . K 6 HOH A 35 535 465 HOH HOH . K 6 HOH A 36 536 410 HOH HOH . K 6 HOH A 37 537 477 HOH HOH . K 6 HOH A 38 538 417 HOH HOH . K 6 HOH A 39 539 592 HOH HOH . K 6 HOH A 40 540 452 HOH HOH . K 6 HOH A 41 541 403 HOH HOH . K 6 HOH A 42 542 400 HOH HOH . K 6 HOH A 43 543 409 HOH HOH . K 6 HOH A 44 544 418 HOH HOH . K 6 HOH A 45 545 407 HOH HOH . K 6 HOH A 46 546 486 HOH HOH . K 6 HOH A 47 547 387 HOH HOH . K 6 HOH A 48 548 414 HOH HOH . K 6 HOH A 49 549 390 HOH HOH . K 6 HOH A 50 550 372 HOH HOH . K 6 HOH A 51 551 411 HOH HOH . K 6 HOH A 52 552 500 HOH HOH . K 6 HOH A 53 553 449 HOH HOH . K 6 HOH A 54 554 578 HOH HOH . K 6 HOH A 55 555 504 HOH HOH . K 6 HOH A 56 556 376 HOH HOH . K 6 HOH A 57 557 555 HOH HOH . K 6 HOH A 58 558 516 HOH HOH . K 6 HOH A 59 559 396 HOH HOH . K 6 HOH A 60 560 448 HOH HOH . K 6 HOH A 61 561 472 HOH HOH . K 6 HOH A 62 562 428 HOH HOH . K 6 HOH A 63 563 450 HOH HOH . K 6 HOH A 64 564 462 HOH HOH . K 6 HOH A 65 565 445 HOH HOH . K 6 HOH A 66 566 441 HOH HOH . K 6 HOH A 67 567 399 HOH HOH . K 6 HOH A 68 568 454 HOH HOH . K 6 HOH A 69 569 443 HOH HOH . K 6 HOH A 70 570 480 HOH HOH . K 6 HOH A 71 571 464 HOH HOH . K 6 HOH A 72 572 447 HOH HOH . K 6 HOH A 73 573 425 HOH HOH . K 6 HOH A 74 574 375 HOH HOH . K 6 HOH A 75 575 371 HOH HOH . K 6 HOH A 76 576 367 HOH HOH . K 6 HOH A 77 577 490 HOH HOH . K 6 HOH A 78 578 511 HOH HOH . K 6 HOH A 79 579 532 HOH HOH . K 6 HOH A 80 580 439 HOH HOH . K 6 HOH A 81 581 538 HOH HOH . K 6 HOH A 82 582 368 HOH HOH . K 6 HOH A 83 583 498 HOH HOH . K 6 HOH A 84 584 435 HOH HOH . K 6 HOH A 85 585 557 HOH HOH . K 6 HOH A 86 586 380 HOH HOH . K 6 HOH A 87 587 590 HOH HOH . K 6 HOH A 88 588 374 HOH HOH . K 6 HOH A 89 589 436 HOH HOH . K 6 HOH A 90 590 534 HOH HOH . K 6 HOH A 91 591 533 HOH HOH . K 6 HOH A 92 592 536 HOH HOH . K 6 HOH A 93 593 386 HOH HOH . K 6 HOH A 94 594 408 HOH HOH . K 6 HOH A 95 595 488 HOH HOH . K 6 HOH A 96 596 382 HOH HOH . K 6 HOH A 97 597 563 HOH HOH . K 6 HOH A 98 598 481 HOH HOH . K 6 HOH A 99 599 501 HOH HOH . K 6 HOH A 100 600 474 HOH HOH . K 6 HOH A 101 601 446 HOH HOH . K 6 HOH A 102 602 444 HOH HOH . K 6 HOH A 103 603 404 HOH HOH . K 6 HOH A 104 604 482 HOH HOH . K 6 HOH A 105 605 540 HOH HOH . K 6 HOH A 106 606 485 HOH HOH . K 6 HOH A 107 607 377 HOH HOH . K 6 HOH A 108 608 483 HOH HOH . K 6 HOH A 109 609 379 HOH HOH . K 6 HOH A 110 610 460 HOH HOH . K 6 HOH A 111 611 423 HOH HOH . K 6 HOH A 112 612 453 HOH HOH . K 6 HOH A 113 613 455 HOH HOH . K 6 HOH A 114 614 432 HOH HOH . K 6 HOH A 115 615 459 HOH HOH . K 6 HOH A 116 616 440 HOH HOH . K 6 HOH A 117 617 413 HOH HOH . K 6 HOH A 118 618 378 HOH HOH . K 6 HOH A 119 619 512 HOH HOH . K 6 HOH A 120 620 392 HOH HOH . K 6 HOH A 121 621 438 HOH HOH . K 6 HOH A 122 622 398 HOH HOH . K 6 HOH A 123 623 560 HOH HOH . K 6 HOH A 124 624 469 HOH HOH . K 6 HOH A 125 625 479 HOH HOH . K 6 HOH A 126 626 527 HOH HOH . K 6 HOH A 127 627 385 HOH HOH . K 6 HOH A 128 628 406 HOH HOH . K 6 HOH A 129 629 388 HOH HOH . K 6 HOH A 130 630 584 HOH HOH . K 6 HOH A 131 631 424 HOH HOH . K 6 HOH A 132 632 503 HOH HOH . K 6 HOH A 133 633 426 HOH HOH . K 6 HOH A 134 634 370 HOH HOH . K 6 HOH A 135 635 467 HOH HOH . K 6 HOH A 136 636 415 HOH HOH . K 6 HOH A 137 637 458 HOH HOH . K 6 HOH A 138 638 487 HOH HOH . K 6 HOH A 139 639 393 HOH HOH . K 6 HOH A 140 640 420 HOH HOH . K 6 HOH A 141 641 580 HOH HOH . K 6 HOH A 142 642 369 HOH HOH . K 6 HOH A 143 643 559 HOH HOH . K 6 HOH A 144 644 475 HOH HOH . K 6 HOH A 145 645 564 HOH HOH . K 6 HOH A 146 646 473 HOH HOH . K 6 HOH A 147 647 389 HOH HOH . K 6 HOH A 148 648 433 HOH HOH . K 6 HOH A 149 649 574 HOH HOH . K 6 HOH A 150 650 577 HOH HOH . K 6 HOH A 151 651 401 HOH HOH . K 6 HOH A 152 652 507 HOH HOH . K 6 HOH A 153 653 468 HOH HOH . K 6 HOH A 154 654 470 HOH HOH . K 6 HOH A 155 655 591 HOH HOH . K 6 HOH A 156 656 422 HOH HOH . K 6 HOH A 157 657 521 HOH HOH . K 6 HOH A 158 658 429 HOH HOH . K 6 HOH A 159 659 471 HOH HOH . K 6 HOH A 160 660 546 HOH HOH . K 6 HOH A 161 661 434 HOH HOH . K 6 HOH A 162 662 391 HOH HOH . K 6 HOH A 163 663 523 HOH HOH . K 6 HOH A 164 664 537 HOH HOH . K 6 HOH A 165 665 397 HOH HOH . K 6 HOH A 166 666 496 HOH HOH . K 6 HOH A 167 667 442 HOH HOH . K 6 HOH A 168 668 510 HOH HOH . K 6 HOH A 169 669 492 HOH HOH . K 6 HOH A 170 670 525 HOH HOH . K 6 HOH A 171 671 543 HOH HOH . K 6 HOH A 172 672 430 HOH HOH . K 6 HOH A 173 673 547 HOH HOH . K 6 HOH A 174 674 518 HOH HOH . K 6 HOH A 175 675 456 HOH HOH . K 6 HOH A 176 676 502 HOH HOH . K 6 HOH A 177 677 419 HOH HOH . K 6 HOH A 178 678 514 HOH HOH . K 6 HOH A 179 679 524 HOH HOH . K 6 HOH A 180 680 582 HOH HOH . K 6 HOH A 181 681 437 HOH HOH . K 6 HOH A 182 682 595 HOH HOH . K 6 HOH A 183 683 581 HOH HOH . K 6 HOH A 184 684 579 HOH HOH . K 6 HOH A 185 685 517 HOH HOH . K 6 HOH A 186 686 402 HOH HOH . K 6 HOH A 187 687 484 HOH HOH . K 6 HOH A 188 688 513 HOH HOH . K 6 HOH A 189 689 476 HOH HOH . K 6 HOH A 190 690 526 HOH HOH . K 6 HOH A 191 691 565 HOH HOH . K 6 HOH A 192 692 373 HOH HOH . K 6 HOH A 193 693 594 HOH HOH . K 6 HOH A 194 694 457 HOH HOH . K 6 HOH A 195 695 568 HOH HOH . K 6 HOH A 196 696 554 HOH HOH . K 6 HOH A 197 697 556 HOH HOH . K 6 HOH A 198 698 530 HOH HOH . K 6 HOH A 199 699 585 HOH HOH . K 6 HOH A 200 700 528 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 30.195 8.865 -2.288 1 15.4 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 31.48 8.985 -1.882 1 16.55 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 31.706 8.979 -0.624 1 16.64 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 32.484 9.122 -2.796 1 17.49 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 32.267 9.158 -4.116 1 17.51 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 33.172 9.307 -4.934 1 19.63 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 30.887 9.019 -4.613 1 16.6 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 30.607 8.993 -5.913 1 16.23 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 29.322 8.935 -6.344 1 18.68 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 29.025 8.993 -7.718 1 17.02 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 27.719 8.964 -8.112 1 18.52 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 27.326 8.993 -9.586 1 18.44 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 26.653 8.836 -7.1 1 17.28 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 25.246 8.785 -7.566 1 18.54 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 26.911 8.774 -5.777 1 16.43 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 28.214 8.836 -5.34 1 16.09 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 28.524 8.807 -3.979 1 15.3 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 29.851 8.896 -3.583 1 15.6 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 27.505 8.784 -2.925 1 15.24 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 27.102 10.262 -2.756 1 14.7 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 28.108 10.998 -2.054 1 15.9 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 25.777 10.503 -2.011 1 13.69 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 25.732 9.706 -0.842 1 13.9 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 24.542 10.208 -2.852 1 13.46 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 24.639 10.68 -4.234 1 12.57 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 23.348 10.851 -2.159 1 13.13 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 22.136 10.429 -2.712 1 13.29 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 21.423 11.235 -3.955 1 14.89 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 20.029 10.612 -3.996 1 13.56 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 22.195 10.845 -5.229 1 14.5 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 21.477 12.733 -3.686 1 13.58 ? O3P FMN 401 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #