data_7M3F # _model_server_result.job_id pgAHPbaENxT8O9rBr7017w _model_server_result.datetime_utc '2024-11-21 13:48:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":905}' # _entry.id 7M3F # _exptl.entry_id 7M3F _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 357.412 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1R)-1-(naphthalen-1-yl)ethyl]-3-[3-(trifluoromethyl)phenyl]propan-1-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M3F _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 U N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 1 NAG 2 n C NAG 2 C 2 NAG C 2 NAG 2 n D NAG 1 D 1 NAG D 1 NAG 2 n D NAG 2 D 2 NAG D 2 NAG 2 n E NAG 1 E 1 NAG E 1 NAG 2 n E NAG 2 E 2 NAG E 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 68 A CYS 60 1_555 A SG CYS 109 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 244 A CYS 236 1_555 A SG CYS 569 A CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 366 A CYS 358 1_555 A SG CYS 403 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 A SG CYS 445 A CYS 437 1_555 A SG CYS 457 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 A SG CYS 550 A CYS 542 1_555 A SG CYS 570 A CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 554 A CYS 546 1_555 A SG CYS 573 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf7 A SG CYS 576 A CYS 568 1_555 A SG CYS 590 A CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 A SG CYS 593 A CYS 585 1_555 A SG CYS 606 A CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 A SG CYS 685 A CYS 677 1_555 A SG CYS 773 A CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf10 B SG CYS 68 B CYS 60 1_555 B SG CYS 109 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 B SG CYS 244 B CYS 236 1_555 B SG CYS 569 B CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf12 B SG CYS 366 B CYS 358 1_555 B SG CYS 403 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf13 B SG CYS 445 B CYS 437 1_555 B SG CYS 457 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf14 B SG CYS 550 B CYS 542 1_555 B SG CYS 570 B CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf15 B SG CYS 554 B CYS 546 1_555 B SG CYS 573 B CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf16 B SG CYS 576 B CYS 568 1_555 B SG CYS 590 B CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf17 B SG CYS 593 B CYS 585 1_555 B SG CYS 606 B CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf18 B SG CYS 685 B CYS 677 1_555 B SG CYS 773 B CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 269 A ASN 261 1_555 F C1 NAG . A NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 295 A ASN 287 1_555 G C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 A ND2 ASN 476 A ASN 468 1_555 H C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 A ND2 ASN 496 A ASN 488 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale5 A ND2 ASN 549 A ASN 541 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 A ND2 ASN 602 A ASN 594 1_555 I C1 NAG . A NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 B ND2 ASN 269 B ASN 261 1_555 P C1 NAG . B NAG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale8 B ND2 ASN 295 B ASN 287 1_555 Q C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale9 B ND2 ASN 476 B ASN 468 1_555 S C1 NAG . B NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale10 B ND2 ASN 496 B ASN 488 1_555 R C1 NAG . B NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale11 B ND2 ASN 549 B ASN 541 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale12 B ND2 ASN 602 B ASN 594 1_555 T C1 NAG . B NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale13 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale14 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale15 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? metalc ? metalc1 A O ILE 89 A ILE 81 1_555 L CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.001 ? metalc ? metalc2 A O SER 92 A SER 84 1_555 L CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc3 A O LEU 95 A LEU 87 1_555 L CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc4 A O LEU 96 A LEU 88 1_555 L CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.911 ? metalc ? metalc5 A OD1 ASP 242 A ASP 234 1_555 N CA CA . A CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.802 ? metalc ? metalc6 A O GLY 565 A GLY 557 1_555 M CA CA . A CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc7 N CA CA . A CA 909 1_555 B O GLY 565 B GLY 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc8 B O ILE 89 B ILE 81 1_555 W CA CA . B CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.198 ? metalc ? metalc9 B O SER 92 B SER 84 1_555 W CA CA . B CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc10 B O LEU 96 B LEU 88 1_555 W CA CA . B CA 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? # _chem_comp.formula 'C22 H22 F3 N' _chem_comp.formula_weight 357.412 _chem_comp.id YP4 _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1R)-1-(naphthalen-1-yl)ethyl]-3-[3-(trifluoromethyl)phenyl]propan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 N YP4 sing 408 n n C3 C4 YP4 sing 409 n n N CA YP4 sing 410 n n C5 C4 YP4 sing 411 n n C5 C6 YP4 sing 412 n n C11 C6 YP4 doub 413 n y C11 C10 YP4 sing 414 n y C1 CA YP4 sing 415 n n CA CB YP4 sing 416 n n C6 C7 YP4 sing 417 n y C10 C9 YP4 doub 418 n y C14 CB YP4 doub 419 n y C14 C15 YP4 sing 420 n y CB CG YP4 sing 421 n y C7 C8 YP4 doub 422 n y C15 C16 YP4 doub 423 n y C9 C8 YP4 sing 424 n y C8 C12 YP4 sing 425 n n CG CD2 YP4 doub 426 n y CG CD1 YP4 sing 427 n y CD2 CE2 YP4 sing 428 n y C16 CD1 YP4 sing 429 n y CD1 CE1 YP4 doub 430 n y F2 C12 YP4 sing 431 n n C12 F3 YP4 sing 432 n n C12 F1 YP4 sing 433 n n CE2 CZ YP4 doub 434 n y CE1 CZ YP4 sing 435 n y C1 H1 YP4 sing 436 n n C1 H2 YP4 sing 437 n n C1 H3 YP4 sing 438 n n C3 H4 YP4 sing 439 n n C3 H5 YP4 sing 440 n n C4 H6 YP4 sing 441 n n C4 H7 YP4 sing 442 n n C5 H8 YP4 sing 443 n n C5 H9 YP4 sing 444 n n N H10 YP4 sing 445 n n CA H12 YP4 sing 446 n n CD2 H13 YP4 sing 447 n n CE1 H14 YP4 sing 448 n n CE2 H15 YP4 sing 449 n n CZ H16 YP4 sing 450 n n C7 H17 YP4 sing 451 n n C9 H18 YP4 sing 452 n n C10 H19 YP4 sing 453 n n C11 H20 YP4 sing 454 n n C14 H21 YP4 sing 455 n n C15 H22 YP4 sing 456 n n C16 H23 YP4 sing 457 n n # _atom_sites.entry_id 7M3F _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 NAG A 1 901 901 NAG NAG . G 3 NAG A 1 902 902 NAG NAG . H 3 NAG A 1 903 903 NAG NAG . I 3 NAG A 1 904 904 NAG NAG . J 4 YP4 A 1 905 905 YP4 YP4 . K 5 TRP A 1 906 906 TRP TRP . L 6 CA A 1 907 907 CA CA . M 6 CA A 1 908 908 CA CA . N 6 CA A 1 909 909 CA CA . O 7 PO4 A 1 910 910 PO4 PO4 . P 3 NAG B 1 901 901 NAG NAG . Q 3 NAG B 1 902 902 NAG NAG . R 3 NAG B 1 903 903 NAG NAG . S 3 NAG B 1 904 904 NAG NAG . T 3 NAG B 1 905 905 NAG NAG . U 4 YP4 B 1 906 906 YP4 YP4 . V 5 TRP B 1 907 907 TRP TRP . W 6 CA B 1 908 908 CA CA . X 7 PO4 B 1 909 909 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 YP4 . . . J 4 211.919 208.866 229.321 1 82.02 ? C1 YP4 905 A 1 HETATM 2 C C3 YP4 . . . J 4 211.631 205.178 228.023 1 82.02 ? C3 YP4 905 A 1 HETATM 3 C C4 YP4 . . . J 4 210.28 204.8 228.633 1 82.02 ? C4 YP4 905 A 1 HETATM 4 C C5 YP4 . . . J 4 209.956 203.311 228.507 1 82.02 ? C5 YP4 905 A 1 HETATM 5 C C6 YP4 . . . J 4 208.898 202.896 229.509 1 82.02 ? C6 YP4 905 A 1 HETATM 6 N N YP4 . . . J 4 211.869 206.695 228.113 1 82.02 ? N YP4 905 A 1 HETATM 7 C CA YP4 . . . J 4 211.816 207.345 229.507 1 82.02 ? CA YP4 905 A 1 HETATM 8 C CB YP4 . . . J 4 212.861 206.789 230.482 1 82.02 ? CB YP4 905 A 1 HETATM 9 C CG YP4 . . . J 4 212.5 206.133 231.709 1 82.02 ? CG YP4 905 A 1 HETATM 10 C CD1 YP4 . . . J 4 213.547 205.715 232.594 1 82.02 ? CD1 YP4 905 A 1 HETATM 11 C CD2 YP4 . . . J 4 211.162 205.881 232.12 1 82.02 ? CD2 YP4 905 A 1 HETATM 12 C CE1 YP4 . . . J 4 213.224 205.086 233.818 1 82.02 ? CE1 YP4 905 A 1 HETATM 13 C CE2 YP4 . . . J 4 210.882 205.232 233.316 1 82.02 ? CE2 YP4 905 A 1 HETATM 14 C CZ YP4 . . . J 4 211.903 204.836 234.16 1 82.02 ? CZ YP4 905 A 1 HETATM 15 C C7 YP4 . . . J 4 209.28 202.417 230.765 1 82.02 ? C7 YP4 905 A 1 HETATM 16 C C8 YP4 . . . J 4 208.318 202.013 231.695 1 82.02 ? C8 YP4 905 A 1 HETATM 17 C C9 YP4 . . . J 4 206.966 202.113 231.352 1 82.02 ? C9 YP4 905 A 1 HETATM 18 C C10 YP4 . . . J 4 206.578 202.629 230.117 1 82.02 ? C10 YP4 905 A 1 HETATM 19 C C11 YP4 . . . J 4 207.544 203.015 229.192 1 82.02 ? C11 YP4 905 A 1 HETATM 20 C C12 YP4 . . . J 4 208.75 201.463 233.054 1 82.02 ? C12 YP4 905 A 1 HETATM 21 C C14 YP4 . . . J 4 214.21 206.965 230.176 1 82.02 ? C14 YP4 905 A 1 HETATM 22 C C15 YP4 . . . J 4 215.212 206.547 231.037 1 82.02 ? C15 YP4 905 A 1 HETATM 23 C C16 YP4 . . . J 4 214.896 205.937 232.24 1 82.02 ? C16 YP4 905 A 1 HETATM 24 F F1 YP4 . . . J 4 207.707 201.194 233.843 1 82.02 ? F1 YP4 905 A 1 HETATM 25 F F2 YP4 . . . J 4 209.438 200.336 232.88 1 82.02 ? F2 YP4 905 A 1 HETATM 26 F F3 YP4 . . . J 4 209.525 202.346 233.679 1 82.02 ? F3 YP4 905 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #