data_7M3G # _model_server_result.job_id ynfh_l-3E1PNKo4nwigiwg _model_server_result.datetime_utc '2024-12-26 10:34:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m3g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":909}' # _entry.id 7M3G # _exptl.entry_id 7M3G _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M3G _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M3G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 O N N ? 7 P N N ? 7 R N N ? 7 W N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG E 1 NAG 3 n E NAG 2 E 2 NAG E 2 NAG 3 n F NAG 1 F 1 NAG F 1 NAG 3 n F NAG 2 F 2 NAG F 2 NAG 3 n G NAG 1 G 1 NAG G 1 NAG 3 n G NAG 2 G 2 NAG G 2 NAG 3 n H NAG 1 H 1 NAG H 1 NAG 3 n H NAG 2 H 2 NAG H 2 NAG 3 n I NAG 1 I 1 NAG I 1 NAG 3 n I NAG 2 I 2 NAG I 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 68 A CYS 60 1_555 A SG CYS 109 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 244 A CYS 236 1_555 A SG CYS 569 A CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 366 A CYS 358 1_555 A SG CYS 403 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 490 A CYS 482 1_555 C SG DCY 2 C DCY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 A SG CYS 550 A CYS 542 1_555 A SG CYS 570 A CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 554 A CYS 546 1_555 A SG CYS 573 A CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 A SG CYS 576 A CYS 568 1_555 A SG CYS 590 A CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 A SG CYS 593 A CYS 585 1_555 A SG CYS 606 A CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf9 A SG CYS 685 A CYS 677 1_555 A SG CYS 773 A CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf10 B SG CYS 68 B CYS 60 1_555 B SG CYS 109 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf11 B SG CYS 244 B CYS 236 1_555 B SG CYS 569 B CYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf12 B SG CYS 366 B CYS 358 1_555 B SG CYS 403 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf13 B SG CYS 445 B CYS 437 1_555 B SG CYS 457 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf14 B SG CYS 490 B CYS 482 1_555 D SG DCY 2 D DCY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf15 B SG CYS 550 B CYS 542 1_555 B SG CYS 570 B CYS 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf16 B SG CYS 554 B CYS 546 1_555 B SG CYS 573 B CYS 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf17 B SG CYS 576 B CYS 568 1_555 B SG CYS 590 B CYS 582 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf18 B SG CYS 593 B CYS 585 1_555 B SG CYS 606 B CYS 598 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf19 B SG CYS 685 B CYS 677 1_555 B SG CYS 773 B CYS 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 269 A ASN 261 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 476 A ASN 468 1_555 K C1 NAG . A NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 496 A ASN 488 1_555 L C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale4 A ND2 ASN 549 A ASN 541 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 A ND2 ASN 602 A ASN 594 1_555 M C1 NAG . A NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 B ND2 ASN 269 B ASN 261 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 B ND2 ASN 476 B ASN 468 1_555 T C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale8 B ND2 ASN 496 B ASN 488 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale9 B ND2 ASN 549 B ASN 541 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 B ND2 ASN 602 B ASN 594 1_555 U C1 NAG . B NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale11 C C ACE 1 C ACE 1 1_555 C N DCY 2 C DCY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 C C DCY 2 C DCY 2 1_555 C N DAL 3 C DAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 C C DAL 3 C DAL 3 1_555 C N DAR 4 C DAR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 C C DAR 4 C DAR 4 1_555 C N DAR 5 C DAR 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale15 C C DAR 5 C DAR 5 1_555 C N DAR 6 C DAR 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 C C DAR 6 C DAR 6 1_555 C N DAL 7 C DAL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 C C DAL 7 C DAL 7 1_555 C N DAR 8 C DAR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 C C DAR 8 C DAR 8 1_555 C N NH2 9 C NH2 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 D C ACE 1 D ACE 1 1_555 D N DCY 2 D DCY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale20 D C DCY 2 D DCY 2 1_555 D N DAL 3 D DAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 D C DAL 3 D DAL 3 1_555 D N DAR 4 D DAR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale22 D C DAR 4 D DAR 4 1_555 D N DAR 5 D DAR 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale23 D C DAR 5 D DAR 5 1_555 D N DAR 6 D DAR 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale24 D C DAR 6 D DAR 6 1_555 D N DAL 7 D DAL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale25 D C DAL 7 D DAL 7 1_555 D N DAR 8 D DAR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale26 D C DAR 8 D DAR 8 1_555 D N NH2 9 D NH2 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale27 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale28 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale29 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale30 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale31 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 A O ILE 89 A ILE 81 1_555 O CA CA . A CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc2 A O SER 92 A SER 84 1_555 O CA CA . A CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc3 A O LEU 95 A LEU 87 1_555 O CA CA . A CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? metalc ? metalc4 A O LEU 96 A LEU 88 1_555 O CA CA . A CA 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? metalc ? metalc5 A O GLY 565 A GLY 557 1_555 P CA CA . A CA 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc6 P CA CA . A CA 907 1_555 B OD1 ASP 242 B ASP 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc7 R CA CA . A CA 909 1_555 B O GLY 565 B GLY 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc8 B O ILE 89 B ILE 81 1_555 W CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc9 B O SER 92 B SER 84 1_555 W CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc10 B O LEU 95 B LEU 87 1_555 W CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc11 B O LEU 96 B LEU 88 1_555 W CA CA . B CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.084 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7M3G _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 4 H43 A 1 901 901 H43 H43 . K 5 NAG A 1 902 902 NAG NAG . L 5 NAG A 1 903 903 NAG NAG . M 5 NAG A 1 904 904 NAG NAG . N 6 TRP A 1 905 905 TRP TRP . O 7 CA A 1 906 906 CA CA . P 7 CA A 1 907 907 CA CA . Q 8 PO4 A 1 908 908 PO4 PO4 . R 7 CA A 1 909 905 CA CA . S 4 H43 B 1 901 901 H43 H43 . T 5 NAG B 1 902 902 NAG NAG . U 5 NAG B 1 903 903 NAG NAG . V 6 TRP B 1 904 904 TRP TRP . W 7 CA B 1 905 906 CA CA . X 8 PO4 B 1 906 907 PO4 PO4 . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id R _atom_site.label_entity_id 7 _atom_site.Cartn_x 204.983 _atom_site.Cartn_y 191.842 _atom_site.Cartn_z 238.685 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 67.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 909 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #