data_7M4P
#
_model_server_result.job_id            eh2loI1pNq3Ihqm5v62tjA 
_model_server_result.datetime_utc      '2024-11-22 17:47:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7m4p 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1105}' 
#
_entry.id    7M4P 
#
_exptl.entry_id    7M4P 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              558.555 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Eravacycline 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7M4P 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7M4P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H31 F N4 O8' 
_chem_comp.formula_weight    558.555 
_chem_comp.id                YQM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Eravacycline 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C37 C38 YQM sing 506 n n 
C37 C36 YQM sing 507 n n 
C38 C39 YQM sing 508 n n 
C36 N35 YQM sing 509 n n 
C39 N35 YQM sing 510 n n 
N35 C34 YQM sing 511 n n 
C34 C32 YQM sing 512 n n 
C32 N31 YQM sing 513 n n 
C32 O33 YQM doub 514 n n 
N31 C12 YQM sing 515 n n 
C11 C12 YQM doub 516 n y 
C11 C10 YQM sing 517 n y 
C12 C13 YQM sing 518 n y 
F40 C10 YQM sing 519 n n 
C10 C09 YQM doub 520 n y 
C13 O30 YQM sing 521 n n 
C13 C14 YQM doub 522 n y 
C09 C14 YQM sing 523 n y 
C09 C08 YQM sing 524 n n 
C14 C15 YQM sing 525 n n 
C08 C07 YQM sing 526 n n 
C15 O29 YQM sing 527 n n 
C15 C16 YQM doub 528 n n 
C07 C16 YQM sing 529 n n 
C07 C06 YQM sing 530 n n 
C16 C17 YQM sing 531 n n 
C06 C05 YQM sing 532 n n 
C17 O18 YQM doub 533 n n 
C17 C19 YQM sing 534 n n 
C03 N02 YQM sing 535 n n 
C05 C19 YQM sing 536 n n 
C05 C04 YQM sing 537 n n 
C19 O28 YQM sing 538 n n 
C19 C20 YQM sing 539 n n 
C04 N02 YQM sing 540 n n 
C04 C22 YQM sing 541 n n 
N02 C01 YQM sing 542 n n 
O27 C20 YQM sing 543 n n 
C20 C21 YQM doub 544 n n 
C22 C21 YQM sing 545 n n 
C22 O23 YQM doub 546 n n 
C21 C24 YQM sing 547 n n 
C24 N26 YQM sing 548 n n 
C24 O25 YQM doub 549 n n 
C01 H1 YQM sing 550 n n 
C01 H2 YQM sing 551 n n 
C01 H3 YQM sing 552 n n 
C03 H4 YQM sing 553 n n 
C03 H5 YQM sing 554 n n 
C03 H6 YQM sing 555 n n 
C04 H7 YQM sing 556 n n 
C05 H8 YQM sing 557 n n 
C06 H9 YQM sing 558 n n 
C06 H10 YQM sing 559 n n 
C07 H11 YQM sing 560 n n 
C08 H12 YQM sing 561 n n 
C08 H13 YQM sing 562 n n 
C11 H14 YQM sing 563 n n 
C34 H19 YQM sing 564 n n 
C34 H20 YQM sing 565 n n 
C36 H21 YQM sing 566 n n 
C36 H22 YQM sing 567 n n 
C37 H23 YQM sing 568 n n 
C37 H24 YQM sing 569 n n 
C38 H25 YQM sing 570 n n 
C38 H26 YQM sing 571 n n 
C39 H27 YQM sing 572 n n 
C39 H28 YQM sing 573 n n 
N26 H30 YQM sing 574 n n 
N26 H31 YQM sing 575 n n 
N31 H32 YQM sing 576 n n 
O27 H34 YQM sing 577 n n 
O28 H35 YQM sing 578 n n 
O29 H36 YQM sing 579 n n 
O30 H37 YQM sing 580 n n 
#
_atom_sites.entry_id                     7M4P 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 3PE A 1 1101 5 3PE 3PE . 
E 2 3PE B 1 1101 1 3PE 3PE . 
F 2 3PE B 1 1102 2 3PE 3PE . 
G 2 3PE B 1 1103 3 3PE 3PE . 
H 2 3PE B 1 1104 7 3PE 3PE . 
I 3 YQM B 1 1105 1 YQM ERA . 
J 2 3PE C 1 1101 4 3PE 3PE . 
K 2 3PE C 1 1102 6 3PE 3PE . 
L 2 3PE C 1 1103 8 3PE 3PE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 YQM . . . I 3 217.797 170.767 218.313 1 30 ? C01 YQM 1105 B 1 
HETATM 2 C C03 YQM . . . I 3 219.096 169.528 216.738 1 30 ? C03 YQM 1105 B 1 
HETATM 3 C C04 YQM . . . I 3 216.587 169.115 216.948 1 30 ? C04 YQM 1105 B 1 
HETATM 4 C C05 YQM . . . I 3 215.21 169.841 217.418 1 30 ? C05 YQM 1105 B 1 
HETATM 5 C C06 YQM . . . I 3 214.936 169.563 218.903 1 30 ? C06 YQM 1105 B 1 
HETATM 6 C C07 YQM . . . I 3 213.762 170.38 219.549 1 30 ? C07 YQM 1105 B 1 
HETATM 7 C C08 YQM . . . I 3 213.646 170.159 221.123 1 30 ? C08 YQM 1105 B 1 
HETATM 8 C C09 YQM . . . I 3 212.34 170.727 221.761 1 30 ? C09 YQM 1105 B 1 
HETATM 9 C C10 YQM . . . I 3 212.175 170.954 223.177 1 30 ? C10 YQM 1105 B 1 
HETATM 10 C C11 YQM . . . I 3 211.011 171.469 223.8 1 30 ? C11 YQM 1105 B 1 
HETATM 11 C C12 YQM . . . I 3 209.869 171.807 223.03 1 30 ? C12 YQM 1105 B 1 
HETATM 12 C C13 YQM . . . I 3 210.009 171.583 221.624 1 30 ? C13 YQM 1105 B 1 
HETATM 13 C C14 YQM . . . I 3 211.225 171.047 220.973 1 30 ? C14 YQM 1105 B 1 
HETATM 14 C C15 YQM . . . I 3 211.339 170.816 219.449 1 30 ? C15 YQM 1105 B 1 
HETATM 15 C C16 YQM . . . I 3 212.427 170.118 218.906 1 30 ? C16 YQM 1105 B 1 
HETATM 16 C C17 YQM . . . I 3 212.544 169.418 217.558 1 30 ? C17 YQM 1105 B 1 
HETATM 17 C C19 YQM . . . I 3 213.886 169.516 216.59 1 30 ? C19 YQM 1105 B 1 
HETATM 18 C C20 YQM . . . I 3 213.993 168.181 215.665 1 30 ? C20 YQM 1105 B 1 
HETATM 19 C C21 YQM . . . I 3 215.148 167.949 214.916 1 30 ? C21 YQM 1105 B 1 
HETATM 20 C C22 YQM . . . I 3 216.463 168.456 215.499 1 30 ? C22 YQM 1105 B 1 
HETATM 21 C C24 YQM . . . I 3 215.098 167.806 213.358 1 30 ? C24 YQM 1105 B 1 
HETATM 22 C C32 YQM . . . I 3 208.522 173.355 224.676 1 30 ? C32 YQM 1105 B 1 
HETATM 23 C C34 YQM . . . I 3 209.664 174.149 225.398 1 30 ? C34 YQM 1105 B 1 
HETATM 24 C C36 YQM . . . I 3 210.354 176.319 226.295 1 30 ? C36 YQM 1105 B 1 
HETATM 25 C C37 YQM . . . I 3 209.645 177.259 227.218 1 30 ? C37 YQM 1105 B 1 
HETATM 26 C C38 YQM . . . I 3 208.567 176.39 227.882 1 30 ? C38 YQM 1105 B 1 
HETATM 27 C C39 YQM . . . I 3 208.507 175.081 227.098 1 30 ? C39 YQM 1105 B 1 
HETATM 28 F F40 YQM . . . I 3 213.2 170.671 223.999 1 30 ? F40 YQM 1105 B 1 
HETATM 29 N N02 YQM . . . I 3 217.739 170.124 216.988 1 30 ? N02 YQM 1105 B 1 
HETATM 30 N N26 YQM . . . I 3 216.103 168.188 212.441 1 30 ? N26 YQM 1105 B 1 
HETATM 31 N N31 YQM . . . I 3 208.64 172.342 223.657 1 30 ? N31 YQM 1105 B 1 
HETATM 32 N N35 YQM . . . I 3 209.206 175.434 225.868 1 30 ? N35 YQM 1105 B 1 
HETATM 33 O O18 YQM . . . I 3 211.709 168.734 217.005 1 30 ? O18 YQM 1105 B 1 
HETATM 34 O O23 YQM . . . I 3 217.51 168.366 214.883 1 30 ? O23 YQM 1105 B 1 
HETATM 35 O O25 YQM . . . I 3 214.079 167.334 212.858 1 30 ? O25 YQM 1105 B 1 
HETATM 36 O O27 YQM . . . I 3 212.724 167.808 215.321 1 30 ? O27 YQM 1105 B 1 
HETATM 37 O O28 YQM . . . I 3 213.676 170.574 215.701 1 30 ? O28 YQM 1105 B 1 
HETATM 38 O O29 YQM . . . I 3 210.124 170.884 218.812 1 30 ? O29 YQM 1105 B 1 
HETATM 39 O O30 YQM . . . I 3 208.921 171.893 220.828 1 30 ? O30 YQM 1105 B 1 
HETATM 40 O O33 YQM . . . I 3 207.412 173.67 225.069 1 30 ? O33 YQM 1105 B 1 
HETATM 41 H H1 YQM . . . I 3 218.619 171.49 218.463 1 30 ? H1 YQM 1105 B 1 
HETATM 42 H H2 YQM . . . I 3 217.794 170.018 219.126 1 30 ? H2 YQM 1105 B 1 
HETATM 43 H H3 YQM . . . I 3 216.845 171.297 218.488 1 30 ? H3 YQM 1105 B 1 
HETATM 44 H H4 YQM . . . I 3 219.201 168.978 215.782 1 30 ? H4 YQM 1105 B 1 
HETATM 45 H H5 YQM . . . I 3 219.362 168.805 217.534 1 30 ? H5 YQM 1105 B 1 
HETATM 46 H H6 YQM . . . I 3 219.902 170.285 216.757 1 30 ? H6 YQM 1105 B 1 
HETATM 47 H H7 YQM . . . I 3 216.896 168.311 217.727 1 30 ? H7 YQM 1105 B 1 
HETATM 48 H H8 YQM . . . I 3 215.411 170.951 217.428 1 30 ? H8 YQM 1105 B 1 
HETATM 49 H H9 YQM . . . I 3 214.732 168.479 218.942 1 30 ? H9 YQM 1105 B 1 
HETATM 50 H H10 YQM . . . I 3 215.917 169.708 219.443 1 30 ? H10 YQM 1105 B 1 
HETATM 51 H H11 YQM . . . I 3 214.046 171.487 219.339 1 30 ? H11 YQM 1105 B 1 
HETATM 52 H H12 YQM . . . I 3 213.746 169.065 221.323 1 30 ? H12 YQM 1105 B 1 
HETATM 53 H H13 YQM . . . I 3 214.602 170.52 221.628 1 30 ? H13 YQM 1105 B 1 
HETATM 54 H H14 YQM . . . I 3 210.951 171.626 224.909 1 30 ? H14 YQM 1105 B 1 
HETATM 55 H H19 YQM . . . I 3 210.076 173.697 226.336 1 30 ? H19 YQM 1105 B 1 
HETATM 56 H H20 YQM . . . I 3 210.57 174.291 224.745 1 30 ? H20 YQM 1105 B 1 
HETATM 57 H H21 YQM . . . I 3 210.741 176.857 225.41 1 30 ? H21 YQM 1105 B 1 
HETATM 58 H H22 YQM . . . I 3 211.193 175.838 226.867 1 30 ? H22 YQM 1105 B 1 
HETATM 59 H H23 YQM . . . I 3 210.387 177.68 227.922 1 30 ? H23 YQM 1105 B 1 
HETATM 60 H H24 YQM . . . I 3 209.231 178.077 226.589 1 30 ? H24 YQM 1105 B 1 
HETATM 61 H H25 YQM . . . I 3 207.599 176.893 227.785 1 30 ? H25 YQM 1105 B 1 
HETATM 62 H H26 YQM . . . I 3 208.848 176.182 228.922 1 30 ? H26 YQM 1105 B 1 
HETATM 63 H H27 YQM . . . I 3 207.452 174.71 226.873 1 30 ? H27 YQM 1105 B 1 
HETATM 64 H H28 YQM . . . I 3 209.042 174.185 227.467 1 30 ? H28 YQM 1105 B 1 
HETATM 65 H H30 YQM . . . I 3 217.011 168.599 212.679 1 30 ? H30 YQM 1105 B 1 
HETATM 66 H H31 YQM . . . I 3 216.048 168.09 211.451 1 30 ? H31 YQM 1105 B 1 
HETATM 67 H H32 YQM . . . I 3 207.758 171.946 223.316 1 30 ? H32 YQM 1105 B 1 
HETATM 68 H H34 YQM . . . I 3 212.292 166.976 215.649 1 30 ? H34 YQM 1105 B 1 
HETATM 69 H H35 YQM . . . I 3 212.752 170.718 215.394 1 30 ? H35 YQM 1105 B 1 
HETATM 70 H H36 YQM . . . I 3 209.529 170.141 219.043 1 30 ? H36 YQM 1105 B 1 
HETATM 71 H H37 YQM . . . I 3 208.121 172.126 221.335 1 30 ? H37 YQM 1105 B 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    61 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           71 
#