data_7M5H # _model_server_result.job_id 7rAej1T6s26P8l71to3d0w _model_server_result.datetime_utc '2024-12-04 05:05:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m5h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1104}' # _entry.id 7M5H # _exptl.entry_id 7M5H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M5H _cell.length_a 219.901 _cell.length_b 219.901 _cell.length_c 219.901 _cell.Z_PDB 192 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M5H _symmetry.cell_setting ? _symmetry.Int_Tables_number 210 _symmetry.space_group_name_Hall 'F 4d 2 3' _symmetry.space_group_name_H-M 'F 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 26_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 4 A MSE 1 1_555 A N THR 5 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C LYS 57 A LYS 54 1_555 A N MSE 58 A MSE 55 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C LYS 57 A LYS 54 1_555 A N MSE 58 A MSE 55 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 58 A MSE 55 1_555 A N ILE 59 A ILE 56 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C MSE 58 A MSE 55 1_555 A N ILE 59 A ILE 56 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 B C MSE 4 B MSE 1 1_555 B N THR 5 B THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 B C LYS 57 B LYS 54 1_555 B N MSE 58 B MSE 55 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.33 ? covale ? covale9 B C LYS 57 B LYS 54 1_555 B N MSE 58 B MSE 55 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.33 ? covale ? covale10 B C MSE 58 B MSE 55 1_555 B N ILE 59 B ILE 56 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 B C MSE 58 B MSE 55 1_555 B N ILE 59 B ILE 56 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 7M5H _atom_sites.fract_transf_matrix[1][1] 0.004548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004548 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 1001 1001 GOL GOL . D 3 EDO A 1 1002 1201 EDO EDO . E 3 EDO B 1 1101 1101 EDO EDO . F 2 GOL B 1 1102 1201 GOL GOL . G 2 GOL B 1 1103 1001 GOL GOL . H 3 EDO B 1 1104 1301 EDO EDO . I 4 HOH A 1 1101 15 HOH HOH . I 4 HOH A 2 1102 6 HOH HOH . I 4 HOH A 3 1103 71 HOH HOH . I 4 HOH A 4 1104 52 HOH HOH . I 4 HOH A 5 1105 36 HOH HOH . I 4 HOH A 6 1106 70 HOH HOH . I 4 HOH A 7 1107 24 HOH HOH . I 4 HOH A 8 1108 44 HOH HOH . I 4 HOH A 9 1109 86 HOH HOH . I 4 HOH A 10 1110 155 HOH HOH . I 4 HOH A 11 1111 13 HOH HOH . I 4 HOH A 12 1112 10 HOH HOH . I 4 HOH A 13 1113 80 HOH HOH . I 4 HOH A 14 1114 62 HOH HOH . I 4 HOH A 15 1115 55 HOH HOH . I 4 HOH A 16 1116 45 HOH HOH . I 4 HOH A 17 1117 102 HOH HOH . I 4 HOH A 18 1118 12 HOH HOH . I 4 HOH A 19 1119 89 HOH HOH . I 4 HOH A 20 1120 3 HOH HOH . I 4 HOH A 21 1121 53 HOH HOH . I 4 HOH A 22 1122 75 HOH HOH . I 4 HOH A 23 1123 58 HOH HOH . I 4 HOH A 24 1124 17 HOH HOH . I 4 HOH A 25 1125 21 HOH HOH . I 4 HOH A 26 1126 64 HOH HOH . I 4 HOH A 27 1127 33 HOH HOH . I 4 HOH A 28 1128 56 HOH HOH . I 4 HOH A 29 1129 14 HOH HOH . I 4 HOH A 30 1130 59 HOH HOH . I 4 HOH A 31 1131 66 HOH HOH . I 4 HOH A 32 1132 209 HOH HOH . I 4 HOH A 33 1133 23 HOH HOH . I 4 HOH A 34 1134 186 HOH HOH . I 4 HOH A 35 1135 182 HOH HOH . I 4 HOH A 36 1136 79 HOH HOH . I 4 HOH A 37 1137 30 HOH HOH . I 4 HOH A 38 1138 22 HOH HOH . I 4 HOH A 39 1139 47 HOH HOH . I 4 HOH A 40 1140 11 HOH HOH . I 4 HOH A 41 1141 81 HOH HOH . I 4 HOH A 42 1142 72 HOH HOH . I 4 HOH A 43 1143 87 HOH HOH . I 4 HOH A 44 1144 43 HOH HOH . I 4 HOH A 45 1145 19 HOH HOH . I 4 HOH A 46 1146 167 HOH HOH . I 4 HOH A 47 1147 20 HOH HOH . I 4 HOH A 48 1148 220 HOH HOH . I 4 HOH A 49 1149 26 HOH HOH . I 4 HOH A 50 1150 63 HOH HOH . I 4 HOH A 51 1151 50 HOH HOH . I 4 HOH A 52 1152 16 HOH HOH . I 4 HOH A 53 1153 193 HOH HOH . I 4 HOH A 54 1154 84 HOH HOH . I 4 HOH A 55 1155 35 HOH HOH . I 4 HOH A 56 1156 111 HOH HOH . I 4 HOH A 57 1157 18 HOH HOH . I 4 HOH A 58 1158 31 HOH HOH . I 4 HOH A 59 1159 49 HOH HOH . I 4 HOH A 60 1160 82 HOH HOH . I 4 HOH A 61 1161 187 HOH HOH . I 4 HOH A 62 1162 183 HOH HOH . I 4 HOH A 63 1163 199 HOH HOH . I 4 HOH A 64 1164 8 HOH HOH . I 4 HOH A 65 1165 67 HOH HOH . I 4 HOH A 66 1166 172 HOH HOH . I 4 HOH A 67 1167 68 HOH HOH . I 4 HOH A 68 1168 212 HOH HOH . I 4 HOH A 69 1169 7 HOH HOH . I 4 HOH A 70 1170 83 HOH HOH . I 4 HOH A 71 1171 88 HOH HOH . I 4 HOH A 72 1172 41 HOH HOH . I 4 HOH A 73 1173 29 HOH HOH . I 4 HOH A 74 1174 28 HOH HOH . I 4 HOH A 75 1175 2 HOH HOH . I 4 HOH A 76 1176 85 HOH HOH . I 4 HOH A 77 1177 27 HOH HOH . I 4 HOH A 78 1178 202 HOH HOH . I 4 HOH A 79 1179 76 HOH HOH . I 4 HOH A 80 1180 46 HOH HOH . I 4 HOH A 81 1181 237 HOH HOH . I 4 HOH A 82 1182 34 HOH HOH . I 4 HOH A 83 1183 51 HOH HOH . I 4 HOH A 84 1184 73 HOH HOH . I 4 HOH A 85 1185 205 HOH HOH . I 4 HOH A 86 1186 60 HOH HOH . I 4 HOH A 87 1187 211 HOH HOH . I 4 HOH A 88 1188 168 HOH HOH . I 4 HOH A 89 1189 233 HOH HOH . I 4 HOH A 90 1190 54 HOH HOH . I 4 HOH A 91 1191 77 HOH HOH . I 4 HOH A 92 1192 32 HOH HOH . I 4 HOH A 93 1193 151 HOH HOH . I 4 HOH A 94 1194 65 HOH HOH . I 4 HOH A 95 1195 74 HOH HOH . I 4 HOH A 96 1196 236 HOH HOH . I 4 HOH A 97 1197 216 HOH HOH . I 4 HOH A 98 1198 231 HOH HOH . I 4 HOH A 99 1199 163 HOH HOH . I 4 HOH A 100 1200 215 HOH HOH . I 4 HOH A 101 1201 179 HOH HOH . I 4 HOH A 102 1202 38 HOH HOH . I 4 HOH A 103 1203 48 HOH HOH . I 4 HOH A 104 1204 164 HOH HOH . I 4 HOH A 105 1205 157 HOH HOH . I 4 HOH A 106 1206 9 HOH HOH . I 4 HOH A 107 1207 165 HOH HOH . I 4 HOH A 108 1208 180 HOH HOH . I 4 HOH A 109 1209 210 HOH HOH . I 4 HOH A 110 1210 195 HOH HOH . I 4 HOH A 111 1211 25 HOH HOH . I 4 HOH A 112 1212 185 HOH HOH . I 4 HOH A 113 1213 57 HOH HOH . I 4 HOH A 114 1214 181 HOH HOH . I 4 HOH A 115 1215 161 HOH HOH . I 4 HOH A 116 1216 42 HOH HOH . I 4 HOH A 117 1217 162 HOH HOH . J 4 HOH B 1 1201 147 HOH HOH . J 4 HOH B 2 1202 145 HOH HOH . J 4 HOH B 3 1203 91 HOH HOH . J 4 HOH B 4 1204 96 HOH HOH . J 4 HOH B 5 1205 144 HOH HOH . J 4 HOH B 6 1206 159 HOH HOH . J 4 HOH B 7 1207 188 HOH HOH . J 4 HOH B 8 1208 110 HOH HOH . J 4 HOH B 9 1209 112 HOH HOH . J 4 HOH B 10 1210 134 HOH HOH . J 4 HOH B 11 1211 99 HOH HOH . J 4 HOH B 12 1212 121 HOH HOH . J 4 HOH B 13 1213 154 HOH HOH . J 4 HOH B 14 1214 117 HOH HOH . J 4 HOH B 15 1215 4 HOH HOH . J 4 HOH B 16 1216 92 HOH HOH . J 4 HOH B 17 1217 109 HOH HOH . J 4 HOH B 18 1218 113 HOH HOH . J 4 HOH B 19 1219 124 HOH HOH . J 4 HOH B 20 1220 138 HOH HOH . J 4 HOH B 21 1221 128 HOH HOH . J 4 HOH B 22 1222 141 HOH HOH . J 4 HOH B 23 1223 137 HOH HOH . J 4 HOH B 24 1224 120 HOH HOH . J 4 HOH B 25 1225 105 HOH HOH . J 4 HOH B 26 1226 146 HOH HOH . J 4 HOH B 27 1227 135 HOH HOH . J 4 HOH B 28 1228 149 HOH HOH . J 4 HOH B 29 1229 184 HOH HOH . J 4 HOH B 30 1230 214 HOH HOH . J 4 HOH B 31 1231 224 HOH HOH . J 4 HOH B 32 1232 158 HOH HOH . J 4 HOH B 33 1233 116 HOH HOH . J 4 HOH B 34 1234 104 HOH HOH . J 4 HOH B 35 1235 39 HOH HOH . J 4 HOH B 36 1236 140 HOH HOH . J 4 HOH B 37 1237 101 HOH HOH . J 4 HOH B 38 1238 142 HOH HOH . J 4 HOH B 39 1239 123 HOH HOH . J 4 HOH B 40 1240 108 HOH HOH . J 4 HOH B 41 1241 132 HOH HOH . J 4 HOH B 42 1242 95 HOH HOH . J 4 HOH B 43 1243 107 HOH HOH . J 4 HOH B 44 1244 93 HOH HOH . J 4 HOH B 45 1245 106 HOH HOH . J 4 HOH B 46 1246 234 HOH HOH . J 4 HOH B 47 1247 1 HOH HOH . J 4 HOH B 48 1248 115 HOH HOH . J 4 HOH B 49 1249 166 HOH HOH . J 4 HOH B 50 1250 174 HOH HOH . J 4 HOH B 51 1251 169 HOH HOH . J 4 HOH B 52 1252 192 HOH HOH . J 4 HOH B 53 1253 131 HOH HOH . J 4 HOH B 54 1254 143 HOH HOH . J 4 HOH B 55 1255 69 HOH HOH . J 4 HOH B 56 1256 98 HOH HOH . J 4 HOH B 57 1257 197 HOH HOH . J 4 HOH B 58 1258 94 HOH HOH . J 4 HOH B 59 1259 229 HOH HOH . J 4 HOH B 60 1260 126 HOH HOH . J 4 HOH B 61 1261 173 HOH HOH . J 4 HOH B 62 1262 97 HOH HOH . J 4 HOH B 63 1263 103 HOH HOH . J 4 HOH B 64 1264 148 HOH HOH . J 4 HOH B 65 1265 133 HOH HOH . J 4 HOH B 66 1266 129 HOH HOH . J 4 HOH B 67 1267 136 HOH HOH . J 4 HOH B 68 1268 130 HOH HOH . J 4 HOH B 69 1269 175 HOH HOH . J 4 HOH B 70 1270 139 HOH HOH . J 4 HOH B 71 1271 119 HOH HOH . J 4 HOH B 72 1272 232 HOH HOH . J 4 HOH B 73 1273 125 HOH HOH . J 4 HOH B 74 1274 160 HOH HOH . J 4 HOH B 75 1275 235 HOH HOH . J 4 HOH B 76 1276 100 HOH HOH . J 4 HOH B 77 1277 114 HOH HOH . J 4 HOH B 78 1278 152 HOH HOH . J 4 HOH B 79 1279 226 HOH HOH . J 4 HOH B 80 1280 150 HOH HOH . J 4 HOH B 81 1281 176 HOH HOH . J 4 HOH B 82 1282 227 HOH HOH . J 4 HOH B 83 1283 122 HOH HOH . J 4 HOH B 84 1284 178 HOH HOH . J 4 HOH B 85 1285 78 HOH HOH . J 4 HOH B 86 1286 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 3 22.49 18.04 51.722 1 60.53 ? C1 EDO 1104 B 1 HETATM 2 O O1 EDO . . . H 3 23.312 16.88 51.894 1 58.42 ? O1 EDO 1104 B 1 HETATM 3 C C2 EDO . . . H 3 21.225 17.663 50.959 1 53.07 ? C2 EDO 1104 B 1 HETATM 4 O O2 EDO . . . H 3 21.563 17.263 49.626 1 59.81 ? O2 EDO 1104 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #