data_7M5L # _model_server_result.job_id 7jdukzjLfn_jaweZY95Fbw _model_server_result.datetime_utc '2024-11-06 22:43:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m5l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":101}' # _entry.id 7M5L # _exptl.entry_id 7M5L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 44.096 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROPANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M5L _cell.length_a 70.96 _cell.length_b 84.468 _cell.length_c 134.21 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M5L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,D,G 1 1 C,F,I 1 2 A,E,H 1 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x+1/2,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 35.48 0 67.105 3 'crystal symmetry operation' 3_545 -x,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 -42.234 67.105 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 135 A CYS 135 1_555 A SG CYS 162 A CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 135 B CYS 135 1_555 B SG CYS 162 B CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 D SG CYS 4 E CYS 3 1_555 G C1 TME . E TME 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? covale ? covale2 D SG CYS 8 E CYS 8 1_555 G C3 TME . E TME 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? covale ? covale3 D C LYS 13 E LYS 13 1_555 D N NH2 14 E NH2 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale4 E SG CYS 4 D CYS 3 1_555 H C1 TME . D TME 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? covale ? covale5 E SG CYS 8 D CYS 8 1_555 H C3 TME . D TME 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? covale ? covale6 F SG CYS 4 F CYS 3 1_555 I C1 TME . F TME 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? covale ? covale7 F SG CYS 8 F CYS 8 1_555 I C3 TME . F TME 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? # _chem_comp.formula 'C3 H8' _chem_comp.formula_weight 44.096 _chem_comp.id TME _chem_comp.mon_nstd_flag . _chem_comp.name PROPANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TME sing 312 n n C1 H11 TME sing 313 n n C1 H12 TME sing 314 n n C1 H13 TME sing 315 n n C2 C3 TME sing 316 n n C2 H21 TME sing 317 n n C2 H22 TME sing 318 n n C3 H31 TME sing 319 n n C3 H32 TME sing 320 n n C3 H33 TME sing 321 n n # _atom_sites.entry_id 7M5L _atom_sites.fract_transf_matrix[1][1] 0.014092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 TME E 1 101 301 TME LIG . H 3 TME D 1 101 401 TME LIG . I 3 TME F 1 101 301 TME LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TME . . . H 3 -1.624 -15.129 35.802 1 150.82 ? C1 TME 101 D 1 HETATM 2 C C2 TME . . . H 3 -1.76 -16.701 35.743 1 153.39 ? C2 TME 101 D 1 HETATM 3 C C3 TME . . . H 3 -0.659 -17.357 34.836 1 154.96 ? C3 TME 101 D 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 3 #