data_7M5N # _model_server_result.job_id R223KXH784HdOcYqzdC_NQ _model_server_result.datetime_utc '2024-10-14 00:22:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":15}' # _entry.id 7M5N # _exptl.entry_id 7M5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.165 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3-dimethylbenzene _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7M5N _cell.length_a 83.365 _cell.length_b 83.365 _cell.length_c 181.155 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M5N _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G 1 1 B,D,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_455 y-1,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -83.365 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D SG CYS 4 E CYS 4 1_555 F C08 8VH . E 8VH 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? covale ? covale2 D SG CYS 8 E CYS 8 1_555 F C07 8VH . E 8VH 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? covale ? covale3 E SG CYS 4 D CYS 4 1_555 G C08 8VH . D 8VH 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? covale ? covale4 E SG CYS 8 D CYS 8 1_555 G C07 8VH . D 8VH 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? # _chem_comp.formula 'C8 H10' _chem_comp.formula_weight 106.165 _chem_comp.id 8VH _chem_comp.mon_nstd_flag . _chem_comp.name 1,3-dimethylbenzene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C08 C01 8VH sing 1 n n C06 C01 8VH doub 2 n y C06 C05 8VH sing 3 n y C01 C02 8VH sing 4 n y C05 C04 8VH doub 5 n y C02 C03 8VH doub 6 n y C04 C03 8VH sing 7 n y C03 C07 8VH sing 8 n n C02 H1 8VH sing 9 n n C04 H2 8VH sing 10 n n C05 H3 8VH sing 11 n n C06 H4 8VH sing 12 n n C07 H5 8VH sing 13 n n C07 H6 8VH sing 14 n n C07 H7 8VH sing 15 n n C08 H8 8VH sing 16 n n C08 H9 8VH sing 17 n n C08 H10 8VH sing 18 n n # _atom_sites.entry_id 7M5N _atom_sites.fract_transf_matrix[1][1] 0.011995 _atom_sites.fract_transf_matrix[1][2] 0.006926 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013851 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00552 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 8VH E 1 15 1 8VH LIG . G 3 8VH D 1 15 301 8VH LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 8VH . . . G 3 4.988 45.309 -1.799 1 60.64 ? C01 8VH 15 D 1 HETATM 2 C C02 8VH . . . G 3 5.272 43.956 -1.694 1 71.86 ? C02 8VH 15 D 1 HETATM 3 C C03 8VH . . . G 3 5.271 43.13 -2.804 1 81.23 ? C03 8VH 15 D 1 HETATM 4 C C04 8VH . . . G 3 5.005 43.672 -4.053 1 78.68 ? C04 8VH 15 D 1 HETATM 5 C C05 8VH . . . G 3 4.751 45.035 -4.172 1 67.78 ? C05 8VH 15 D 1 HETATM 6 C C06 8VH . . . G 3 4.763 45.864 -3.052 1 56.18 ? C06 8VH 15 D 1 HETATM 7 C C07 8VH . . . G 3 5.564 41.638 -2.604 1 69.54 ? C07 8VH 15 D 1 HETATM 8 C C08 8VH . . . G 3 5.042 46.132 -0.5 1 62.41 ? C08 8VH 15 D 1 # _model_server_stats.io_time_ms 90 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 431 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #