data_7M5V
#
_model_server_result.job_id            7qjXLscpk8qR25sONUmLCQ 
_model_server_result.datetime_utc      '2024-11-04 22:34:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7m5v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1204}' 
#
_entry.id    7M5V 
#
_exptl.entry_id    7M5V 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7M5V 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7M5V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 K N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 1033 A ASN 1033 1_555 S C1 NAG . A NAG 1218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.638 sing 
metalc ? metalc1 A OD2 ASP 513 A ASP 513 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc2 A O THR 515 A THR 515 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc3 A OG1 THR 515 A THR 515 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? 
metalc ? metalc4 B MG MG . A MG 1201 1_555 X O1G ANP . A ANP 1223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7M5V 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 1201 1201 MG MG . 
C 3 1DO A 1 1202 1202 1DO 1DO . 
D 4 LMT A 1 1203 1203 LMT LMT . 
E 5 Y01 A 1 1204 1204 Y01 Y01 . 
F 5 Y01 A 1 1205 1205 Y01 Y01 . 
G 6 D10 A 1 1206 1206 D10 D10 . 
H 7 D12 A 1 1207 1207 D12 D12 . 
I 3 1DO A 1 1208 1208 1DO 1DO . 
J 3 1DO A 1 1209 1209 1DO 1DO . 
K 5 Y01 A 1 1210 1210 Y01 Y01 . 
L 5 Y01 A 1 1211 1211 Y01 Y01 . 
M 7 D12 A 1 1212 1212 D12 D12 . 
N 6 D10 A 1 1213 1213 D10 D10 . 
O 6 D10 A 1 1214 1214 D10 D10 . 
P 6 D10 A 1 1215 1215 D10 D10 . 
Q 6 D10 A 1 1216 1216 D10 D10 . 
R 3 1DO A 1 1217 1217 1DO 1DO . 
S 8 NAG A 1 1218 1218 NAG NAG . 
T 6 D10 A 1 1219 1219 D10 D10 . 
U 6 D10 A 1 1220 1220 D10 D10 . 
V 6 D10 A 1 1221 1221 D10 D10 . 
W 6 D10 A 1 1222 1222 D10 D10 . 
X 9 ANP A 1 1223 1223 ANP ANP . 
Y 10 EUJ A 1 1224 1224 EUJ EUJ . 
Z 11 HOH A 1 1301 1301 HOH HOH . 
Z 11 HOH A 2 1302 1302 HOH HOH . 
Z 11 HOH A 3 1303 1303 HOH HOH . 
Z 11 HOH A 4 1304 1304 HOH HOH . 
Z 11 HOH A 5 1305 1305 HOH HOH . 
Z 11 HOH A 6 1306 1306 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . E 5 167.194 175.15 139.343 1 93.21 ? CAA Y01 1204 A 1 
HETATM 2 C CBA Y01 . . . E 5 166.437 174.845 140.632 1 93.21 ? CBA Y01 1204 A 1 
HETATM 3 C CAB Y01 . . . E 5 167.335 175.067 141.852 1 93.21 ? CAB Y01 1204 A 1 
HETATM 4 C CAN Y01 . . . E 5 165.775 173.433 140.684 1 93.21 ? CAN Y01 1204 A 1 
HETATM 5 C CAJ Y01 . . . E 5 164.248 173.345 140.473 1 93.21 ? CAJ Y01 1204 A 1 
HETATM 6 C CAO Y01 . . . E 5 163.582 172.408 141.485 1 93.21 ? CAO Y01 1204 A 1 
HETATM 7 C CBB Y01 . . . E 5 163.504 173.026 142.907 1 93.21 ? CBB Y01 1204 A 1 
HETATM 8 C CAC Y01 . . . E 5 162.243 173.87 143.009 1 93.21 ? CAC Y01 1204 A 1 
HETATM 9 C CBE Y01 . . . E 5 163.563 171.867 143.94 1 93.21 ? CBE Y01 1204 A 1 
HETATM 10 C CAP Y01 . . . E 5 165.038 171.32 144.044 1 93.21 ? CAP Y01 1204 A 1 
HETATM 11 C CAQ Y01 . . . E 5 165.242 170.86 145.503 1 93.21 ? CAQ Y01 1204 A 1 
HETATM 12 C CBG Y01 . . . E 5 163.807 170.789 145.996 1 93.21 ? CBG Y01 1204 A 1 
HETATM 13 C CBI Y01 . . . E 5 163.216 172.092 145.439 1 93.21 ? CBI Y01 1204 A 1 
HETATM 14 C CAE Y01 . . . E 5 163.856 173.373 146.007 1 93.21 ? CAE Y01 1204 A 1 
HETATM 15 C CAU Y01 . . . E 5 161.728 172.029 145.774 1 93.21 ? CAU Y01 1204 A 1 
HETATM 16 C CAS Y01 . . . E 5 161.447 171.894 147.277 1 93.21 ? CAS Y01 1204 A 1 
HETATM 17 C CBF Y01 . . . E 5 162.13 170.669 147.941 1 93.21 ? CBF Y01 1204 A 1 
HETATM 18 C CBD Y01 . . . E 5 163.601 170.567 147.502 1 93.21 ? CBD Y01 1204 A 1 
HETATM 19 C CAK Y01 . . . E 5 164.08 169.189 147.877 1 93.21 ? CAK Y01 1204 A 1 
HETATM 20 C CAI Y01 . . . E 5 163.77 168.814 149.199 1 93.21 ? CAI Y01 1204 A 1 
HETATM 21 C CAZ Y01 . . . E 5 162.833 169.423 150.016 1 93.21 ? CAZ Y01 1204 A 1 
HETATM 22 C CAV Y01 . . . E 5 162.723 168.812 151.364 1 93.21 ? CAV Y01 1204 A 1 
HETATM 23 C CBH Y01 . . . E 5 162.055 170.589 149.507 1 93.21 ? CBH Y01 1204 A 1 
HETATM 24 C CAD Y01 . . . E 5 162.568 171.861 150.209 1 93.21 ? CAD Y01 1204 A 1 
HETATM 25 C CAT Y01 . . . E 5 160.601 170.353 149.977 1 93.21 ? CAT Y01 1204 A 1 
HETATM 26 C CAR Y01 . . . E 5 160.468 170.063 151.486 1 93.21 ? CAR Y01 1204 A 1 
HETATM 27 C CBC Y01 . . . E 5 161.267 168.792 151.865 1 93.21 ? CBC Y01 1204 A 1 
HETATM 28 O OAW Y01 . . . E 5 161.404 168.48 153.278 1 93.21 ? OAW Y01 1204 A 1 
HETATM 29 C CAY Y01 . . . E 5 161.392 169.504 154.196 1 93.21 ? CAY Y01 1204 A 1 
HETATM 30 O OAG Y01 . . . E 5 162.284 170.351 153.97 1 93.21 ? OAG Y01 1204 A 1 
HETATM 31 C CAM Y01 . . . E 5 160.436 169.573 155.314 1 93.21 ? CAM Y01 1204 A 1 
HETATM 32 C CAL Y01 . . . E 5 160.778 168.628 156.454 1 93.21 ? CAL Y01 1204 A 1 
HETATM 33 C CAX Y01 . . . E 5 160.033 168.972 157.773 1 93.21 ? CAX Y01 1204 A 1 
HETATM 34 O OAH Y01 . . . E 5 160.198 168.181 158.731 1 93.21 ? OAH Y01 1204 A 1 
HETATM 35 O OAF Y01 . . . E 5 159.328 170.005 157.772 1 93.21 ? OAF Y01 1204 A 1 
HETATM 36 H HAA1 Y01 . . . E 5 166.538 175.515 138.543 1 93.21 ? HAA1 Y01 1204 A 1 
HETATM 37 H HAA2 Y01 . . . E 5 167.694 174.262 138.944 1 93.21 ? HAA2 Y01 1204 A 1 
HETATM 38 H HAA3 Y01 . . . E 5 167.95 175.928 139.479 1 93.21 ? HAA3 Y01 1204 A 1 
HETATM 39 H HBA Y01 . . . E 5 165.622 175.597 140.692 1 93.21 ? HBA Y01 1204 A 1 
HETATM 40 H HAB1 Y01 . . . E 5 166.807 174.834 142.787 1 93.21 ? HAB1 Y01 1204 A 1 
HETATM 41 H HAB2 Y01 . . . E 5 167.664 176.113 141.929 1 93.21 ? HAB2 Y01 1204 A 1 
HETATM 42 H HAB3 Y01 . . . E 5 168.235 174.441 141.817 1 93.21 ? HAB3 Y01 1204 A 1 
HETATM 43 H HAN1 Y01 . . . E 5 166.023 172.967 141.651 1 93.21 ? HAN1 Y01 1204 A 1 
HETATM 44 H HAN2 Y01 . . . E 5 166.241 172.833 139.882 1 93.21 ? HAN2 Y01 1204 A 1 
HETATM 45 H HAJ1 Y01 . . . E 5 164.041 172.993 139.447 1 93.21 ? HAJ1 Y01 1204 A 1 
HETATM 46 H HAJ2 Y01 . . . E 5 163.785 174.334 140.574 1 93.21 ? HAJ2 Y01 1204 A 1 
HETATM 47 H HAO1 Y01 . . . E 5 162.559 172.183 141.12 1 93.21 ? HAO1 Y01 1204 A 1 
HETATM 48 H HAO2 Y01 . . . E 5 164.152 171.469 141.492 1 93.21 ? HAO2 Y01 1204 A 1 
HETATM 49 H HBB Y01 . . . E 5 164.356 173.699 143.11 1 93.21 ? HBB Y01 1204 A 1 
HETATM 50 H HAC1 Y01 . . . E 5 162.11 174.515 142.132 1 93.21 ? HAC1 Y01 1204 A 1 
HETATM 51 H HAC2 Y01 . . . E 5 161.345 173.245 143.092 1 93.21 ? HAC2 Y01 1204 A 1 
HETATM 52 H HAC3 Y01 . . . E 5 162.268 174.485 143.911 1 93.21 ? HAC3 Y01 1204 A 1 
HETATM 53 H HBE Y01 . . . E 5 162.853 171.108 143.545 1 93.21 ? HBE Y01 1204 A 1 
HETATM 54 H HAP1 Y01 . . . E 5 165.223 170.472 143.355 1 93.21 ? HAP1 Y01 1204 A 1 
HETATM 55 H HAP2 Y01 . . . E 5 165.794 172.072 143.759 1 93.21 ? HAP2 Y01 1204 A 1 
HETATM 56 H HAQ1 Y01 . . . E 5 165.894 171.541 146.079 1 93.21 ? HAQ1 Y01 1204 A 1 
HETATM 57 H HAQ2 Y01 . . . E 5 165.754 169.886 145.579 1 93.21 ? HAQ2 Y01 1204 A 1 
HETATM 58 H HBG Y01 . . . E 5 163.308 169.903 145.535 1 93.21 ? HBG Y01 1204 A 1 
HETATM 59 H HBD Y01 . . . E 5 164.214 171.272 148.061 1 93.21 ? HBD Y01 1204 A 1 
HETATM 60 H HAE1 Y01 . . . E 5 164.707 173.722 145.406 1 93.21 ? HAE1 Y01 1204 A 1 
HETATM 61 H HAE2 Y01 . . . E 5 164.25 173.251 147.021 1 93.21 ? HAE2 Y01 1204 A 1 
HETATM 62 H HAE3 Y01 . . . E 5 163.148 174.208 146.056 1 93.21 ? HAE3 Y01 1204 A 1 
HETATM 63 H HAU1 Y01 . . . E 5 161.271 171.175 145.236 1 93.21 ? HAU1 Y01 1204 A 1 
HETATM 64 H HAU2 Y01 . . . E 5 161.24 172.946 145.418 1 93.21 ? HAU2 Y01 1204 A 1 
HETATM 65 H HAS1 Y01 . . . E 5 160.355 171.851 147.423 1 93.21 ? HAS1 Y01 1204 A 1 
HETATM 66 H HAS2 Y01 . . . E 5 161.803 172.823 147.759 1 93.21 ? HAS2 Y01 1204 A 1 
HETATM 67 H HBF Y01 . . . E 5 161.576 169.777 147.576 1 93.21 ? HBF Y01 1204 A 1 
HETATM 68 H HAK1 Y01 . . . E 5 165.183 169.08 147.761 1 93.21 ? HAK1 Y01 1204 A 1 
HETATM 69 H HAK2 Y01 . . . E 5 163.574 168.436 147.235 1 93.21 ? HAK2 Y01 1204 A 1 
HETATM 70 H HAI Y01 . . . E 5 164.321 167.994 149.558 1 93.21 ? HAI Y01 1204 A 1 
HETATM 71 H HAV1 Y01 . . . E 5 163.109 167.769 151.409 1 93.21 ? HAV1 Y01 1204 A 1 
HETATM 72 H HAV2 Y01 . . . E 5 163.353 169.368 152.072 1 93.21 ? HAV2 Y01 1204 A 1 
HETATM 73 H HBC Y01 . . . E 5 160.694 167.986 151.354 1 93.21 ? HBC Y01 1204 A 1 
HETATM 74 H HAD1 Y01 . . . E 5 161.746 172.472 150.601 1 93.21 ? HAD1 Y01 1204 A 1 
HETATM 75 H HAD2 Y01 . . . E 5 163.145 172.497 149.548 1 93.21 ? HAD2 Y01 1204 A 1 
HETATM 76 H HAD3 Y01 . . . E 5 163.216 171.623 151.069 1 93.21 ? HAD3 Y01 1204 A 1 
HETATM 77 H HAT1 Y01 . . . E 5 160.186 169.485 149.41 1 93.21 ? HAT1 Y01 1204 A 1 
HETATM 78 H HAT2 Y01 . . . E 5 159.99 171.241 149.719 1 93.21 ? HAT2 Y01 1204 A 1 
HETATM 79 H HAR1 Y01 . . . E 5 159.406 169.932 151.74 1 93.21 ? HAR1 Y01 1204 A 1 
HETATM 80 H HAR2 Y01 . . . E 5 160.839 170.934 152.038 1 93.21 ? HAR2 Y01 1204 A 1 
HETATM 81 H HAM1 Y01 . . . E 5 159.432 169.337 154.931 1 93.21 ? HAM1 Y01 1204 A 1 
HETATM 82 H HAM2 Y01 . . . E 5 160.44 170.61 155.699 1 93.21 ? HAM2 Y01 1204 A 1 
HETATM 83 H HAL1 Y01 . . . E 5 161.87 168.666 156.652 1 93.21 ? HAL1 Y01 1204 A 1 
HETATM 84 H HAL2 Y01 . . . E 5 160.526 167.602 156.165 1 93.21 ? HAL2 Y01 1204 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           84 
#