data_7M5V # _model_server_result.job_id dVCmW9s9XeMezN9OQOKqpw _model_server_result.datetime_utc '2024-11-04 22:38:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1208}' # _entry.id 7M5V # _exptl.entry_id 7M5V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 186.334 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-DODECANOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M5V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 I N N ? 3 J N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 1033 A ASN 1033 1_555 S C1 NAG . A NAG 1218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.638 sing metalc ? metalc1 A OD2 ASP 513 A ASP 513 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A O THR 515 A THR 515 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc3 A OG1 THR 515 A THR 515 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc4 B MG MG . A MG 1201 1_555 X O1G ANP . A ANP 1223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? # _chem_comp.formula 'C12 H26 O' _chem_comp.formula_weight 186.334 _chem_comp.id 1DO _chem_comp.mon_nstd_flag . _chem_comp.name 1-DODECANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7M5V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1201 1201 MG MG . C 3 1DO A 1 1202 1202 1DO 1DO . D 4 LMT A 1 1203 1203 LMT LMT . E 5 Y01 A 1 1204 1204 Y01 Y01 . F 5 Y01 A 1 1205 1205 Y01 Y01 . G 6 D10 A 1 1206 1206 D10 D10 . H 7 D12 A 1 1207 1207 D12 D12 . I 3 1DO A 1 1208 1208 1DO 1DO . J 3 1DO A 1 1209 1209 1DO 1DO . K 5 Y01 A 1 1210 1210 Y01 Y01 . L 5 Y01 A 1 1211 1211 Y01 Y01 . M 7 D12 A 1 1212 1212 D12 D12 . N 6 D10 A 1 1213 1213 D10 D10 . O 6 D10 A 1 1214 1214 D10 D10 . P 6 D10 A 1 1215 1215 D10 D10 . Q 6 D10 A 1 1216 1216 D10 D10 . R 3 1DO A 1 1217 1217 1DO 1DO . S 8 NAG A 1 1218 1218 NAG NAG . T 6 D10 A 1 1219 1219 D10 D10 . U 6 D10 A 1 1220 1220 D10 D10 . V 6 D10 A 1 1221 1221 D10 D10 . W 6 D10 A 1 1222 1222 D10 D10 . X 9 ANP A 1 1223 1223 ANP ANP . Y 10 EUJ A 1 1224 1224 EUJ EUJ . Z 11 HOH A 1 1301 1301 HOH HOH . Z 11 HOH A 2 1302 1302 HOH HOH . Z 11 HOH A 3 1303 1303 HOH HOH . Z 11 HOH A 4 1304 1304 HOH HOH . Z 11 HOH A 5 1305 1305 HOH HOH . Z 11 HOH A 6 1306 1306 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2S 1DO . . . I 3 135.857 155.21 129.229 1 69.06 ? O2S 1DO 1208 A 1 HETATM 2 C C1 1DO . . . I 3 137.159 155.712 129.3 1 69.06 ? C1 1DO 1208 A 1 HETATM 3 C C2 1DO . . . I 3 137.015 157.229 129.529 1 69.06 ? C2 1DO 1208 A 1 HETATM 4 C C3 1DO . . . I 3 136.37 157.518 130.884 1 69.06 ? C3 1DO 1208 A 1 HETATM 5 C C4 1DO . . . I 3 137.394 157.489 132.022 1 69.06 ? C4 1DO 1208 A 1 HETATM 6 C C5 1DO . . . I 3 136.726 157.764 133.382 1 69.06 ? C5 1DO 1208 A 1 HETATM 7 C C6 1DO . . . I 3 137.409 157 134.52 1 69.06 ? C6 1DO 1208 A 1 HETATM 8 C C7 1DO . . . I 3 136.592 157 135.825 1 69.06 ? C7 1DO 1208 A 1 HETATM 9 C C8 1DO . . . I 3 137.48 156.629 137.015 1 69.06 ? C8 1DO 1208 A 1 HETATM 10 C C9 1DO . . . I 3 136.747 156.614 138.365 1 69.06 ? C9 1DO 1208 A 1 HETATM 11 C C10 1DO . . . I 3 137.511 155.807 139.422 1 69.06 ? C10 1DO 1208 A 1 HETATM 12 C C11 1DO . . . I 3 138.874 156.401 139.77 1 69.06 ? C11 1DO 1208 A 1 HETATM 13 C C12 1DO . . . I 3 139.077 156.464 141.278 1 69.06 ? C12 1DO 1208 A 1 HETATM 14 H H2S 1DO . . . I 3 135.787 154.512 129.879 1 69.06 ? H2S 1DO 1208 A 1 HETATM 15 H H1C1 1DO . . . I 3 137.742 155.495 128.376 1 69.06 ? H1C1 1DO 1208 A 1 HETATM 16 H H1C2 1DO . . . I 3 137.738 155.236 130.123 1 69.06 ? H1C2 1DO 1208 A 1 HETATM 17 H H2C1 1DO . . . I 3 136.423 157.674 128.705 1 69.06 ? H2C1 1DO 1208 A 1 HETATM 18 H H2C2 1DO . . . I 3 138.001 157.731 129.446 1 69.06 ? H2C2 1DO 1208 A 1 HETATM 19 H H3C1 1DO . . . I 3 135.546 156.805 131.089 1 69.06 ? H3C1 1DO 1208 A 1 HETATM 20 H H3C2 1DO . . . I 3 135.849 158.498 130.863 1 69.06 ? H3C2 1DO 1208 A 1 HETATM 21 H H4C1 1DO . . . I 3 138.205 158.221 131.836 1 69.06 ? H4C1 1DO 1208 A 1 HETATM 22 H H4C2 1DO . . . I 3 137.928 156.519 132.009 1 69.06 ? H4C2 1DO 1208 A 1 HETATM 23 H H5C1 1DO . . . I 3 135.646 157.511 133.355 1 69.06 ? H5C1 1DO 1208 A 1 HETATM 24 H H5C2 1DO . . . I 3 136.727 158.851 133.598 1 69.06 ? H5C2 1DO 1208 A 1 HETATM 25 H H6C1 1DO . . . I 3 138.417 157.424 134.701 1 69.06 ? H6C1 1DO 1208 A 1 HETATM 26 H H6C2 1DO . . . I 3 137.614 155.959 134.192 1 69.06 ? H6C2 1DO 1208 A 1 HETATM 27 H H7C1 1DO . . . I 3 135.722 156.316 135.767 1 69.06 ? H7C1 1DO 1208 A 1 HETATM 28 H H7C2 1DO . . . I 3 136.126 157.994 135.983 1 69.06 ? H7C2 1DO 1208 A 1 HETATM 29 H H8C1 1DO . . . I 3 138.345 157.323 137.065 1 69.06 ? H8C1 1DO 1208 A 1 HETATM 30 H H8C2 1DO . . . I 3 137.945 155.64 136.825 1 69.06 ? H8C2 1DO 1208 A 1 HETATM 31 H H9C1 1DO . . . I 3 135.739 156.168 138.228 1 69.06 ? H9C1 1DO 1208 A 1 HETATM 32 H H9C2 1DO . . . I 3 136.511 157.63 138.721 1 69.06 ? H9C2 1DO 1208 A 1 HETATM 33 H H101 1DO . . . I 3 137.626 154.757 139.089 1 69.06 ? H101 1DO 1208 A 1 HETATM 34 H H102 1DO . . . I 3 136.902 155.711 140.344 1 69.06 ? H102 1DO 1208 A 1 HETATM 35 H H111 1DO . . . I 3 138.976 157.407 139.324 1 69.06 ? H111 1DO 1208 A 1 HETATM 36 H H112 1DO . . . I 3 139.695 155.815 139.311 1 69.06 ? H112 1DO 1208 A 1 HETATM 37 H H121 1DO . . . I 3 138.256 156.985 141.788 1 69.06 ? H121 1DO 1208 A 1 HETATM 38 H H122 1DO . . . I 3 139.133 155.464 141.728 1 69.06 ? H122 1DO 1208 A 1 HETATM 39 H H123 1DO . . . I 3 139.999 156.988 141.562 1 69.06 ? H123 1DO 1208 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 39 #