data_7M5V # _model_server_result.job_id o6jOxtKIJhmb6efFlUWOLQ _model_server_result.datetime_utc '2024-11-04 22:32:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1210}' # _entry.id 7M5V # _exptl.entry_id 7M5V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M5V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 1033 A ASN 1033 1_555 S C1 NAG . A NAG 1218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.638 sing metalc ? metalc1 A OD2 ASP 513 A ASP 513 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A O THR 515 A THR 515 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc3 A OG1 THR 515 A THR 515 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc4 B MG MG . A MG 1201 1_555 X O1G ANP . A ANP 1223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7M5V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1201 1201 MG MG . C 3 1DO A 1 1202 1202 1DO 1DO . D 4 LMT A 1 1203 1203 LMT LMT . E 5 Y01 A 1 1204 1204 Y01 Y01 . F 5 Y01 A 1 1205 1205 Y01 Y01 . G 6 D10 A 1 1206 1206 D10 D10 . H 7 D12 A 1 1207 1207 D12 D12 . I 3 1DO A 1 1208 1208 1DO 1DO . J 3 1DO A 1 1209 1209 1DO 1DO . K 5 Y01 A 1 1210 1210 Y01 Y01 . L 5 Y01 A 1 1211 1211 Y01 Y01 . M 7 D12 A 1 1212 1212 D12 D12 . N 6 D10 A 1 1213 1213 D10 D10 . O 6 D10 A 1 1214 1214 D10 D10 . P 6 D10 A 1 1215 1215 D10 D10 . Q 6 D10 A 1 1216 1216 D10 D10 . R 3 1DO A 1 1217 1217 1DO 1DO . S 8 NAG A 1 1218 1218 NAG NAG . T 6 D10 A 1 1219 1219 D10 D10 . U 6 D10 A 1 1220 1220 D10 D10 . V 6 D10 A 1 1221 1221 D10 D10 . W 6 D10 A 1 1222 1222 D10 D10 . X 9 ANP A 1 1223 1223 ANP ANP . Y 10 EUJ A 1 1224 1224 EUJ EUJ . Z 11 HOH A 1 1301 1301 HOH HOH . Z 11 HOH A 2 1302 1302 HOH HOH . Z 11 HOH A 3 1303 1303 HOH HOH . Z 11 HOH A 4 1304 1304 HOH HOH . Z 11 HOH A 5 1305 1305 HOH HOH . Z 11 HOH A 6 1306 1306 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . K 5 142.144 153.487 148.725 1 72.45 ? CAA Y01 1210 A 1 HETATM 2 C CBA Y01 . . . K 5 143.367 152.606 148.5 1 72.45 ? CBA Y01 1210 A 1 HETATM 3 C CAB Y01 . . . K 5 142.958 151.194 148.094 1 72.45 ? CAB Y01 1210 A 1 HETATM 4 C CAN Y01 . . . K 5 144.378 152.568 149.677 1 72.45 ? CAN Y01 1210 A 1 HETATM 5 C CAJ Y01 . . . K 5 143.944 153.209 151.004 1 72.45 ? CAJ Y01 1210 A 1 HETATM 6 C CAO Y01 . . . K 5 144.957 152.961 152.126 1 72.45 ? CAO Y01 1210 A 1 HETATM 7 C CBB Y01 . . . K 5 144.265 152.42 153.406 1 72.45 ? CBB Y01 1210 A 1 HETATM 8 C CAC Y01 . . . K 5 144.058 150.933 153.209 1 72.45 ? CAC Y01 1210 A 1 HETATM 9 C CBE Y01 . . . K 5 145.11 152.756 154.667 1 72.45 ? CBE Y01 1210 A 1 HETATM 10 C CAP Y01 . . . K 5 145.051 154.293 154.943 1 72.45 ? CAP Y01 1210 A 1 HETATM 11 C CAQ Y01 . . . K 5 145.221 154.499 156.462 1 72.45 ? CAQ Y01 1210 A 1 HETATM 12 C CBG Y01 . . . K 5 145.567 153.1 156.953 1 72.45 ? CBG Y01 1210 A 1 HETATM 13 C CBI Y01 . . . K 5 144.727 152.181 156.061 1 72.45 ? CBI Y01 1210 A 1 HETATM 14 C CAE Y01 . . . K 5 143.204 152.261 156.335 1 72.45 ? CAE Y01 1210 A 1 HETATM 15 C CAU Y01 . . . K 5 145.257 150.764 156.335 1 72.45 ? CAU Y01 1210 A 1 HETATM 16 C CAS Y01 . . . K 5 145.275 150.377 157.832 1 72.45 ? CAS Y01 1210 A 1 HETATM 17 C CBF Y01 . . . K 5 145.907 151.432 158.8 1 72.45 ? CBF Y01 1210 A 1 HETATM 18 C CBD Y01 . . . K 5 145.39 152.821 158.448 1 72.45 ? CBD Y01 1210 A 1 HETATM 19 C CAK Y01 . . . K 5 146.159 153.848 159.236 1 72.45 ? CAK Y01 1210 A 1 HETATM 20 C CAI Y01 . . . K 5 146.373 153.531 160.591 1 72.45 ? CAI Y01 1210 A 1 HETATM 21 C CAZ Y01 . . . K 5 146.192 152.29 161.173 1 72.45 ? CAZ Y01 1210 A 1 HETATM 22 C CAV Y01 . . . K 5 146.494 152.248 162.631 1 72.45 ? CAV Y01 1210 A 1 HETATM 23 C CBH Y01 . . . K 5 145.727 151.155 160.342 1 72.45 ? CBH Y01 1210 A 1 HETATM 24 C CAD Y01 . . . K 5 144.277 150.83 160.74 1 72.45 ? CAD Y01 1210 A 1 HETATM 25 C CAT Y01 . . . K 5 146.61 149.972 160.76 1 72.45 ? CAT Y01 1210 A 1 HETATM 26 C CAR Y01 . . . K 5 146.644 149.701 162.269 1 72.45 ? CAR Y01 1210 A 1 HETATM 27 C CBC Y01 . . . K 5 147.152 150.922 163.046 1 72.45 ? CBC Y01 1210 A 1 HETATM 28 O OAW Y01 . . . K 5 146.863 150.833 164.443 1 72.45 ? OAW Y01 1210 A 1 HETATM 29 C CAY Y01 . . . K 5 147.535 151.671 165.291 1 72.45 ? CAY Y01 1210 A 1 HETATM 30 O OAG Y01 . . . K 5 148.767 151.681 165.07 1 72.45 ? OAG Y01 1210 A 1 HETATM 31 C CAM Y01 . . . K 5 146.851 152.447 166.339 1 72.45 ? CAM Y01 1210 A 1 HETATM 32 C CAL Y01 . . . K 5 146.138 151.573 167.354 1 72.45 ? CAL Y01 1210 A 1 HETATM 33 C CAX Y01 . . . K 5 145.235 152.413 168.284 1 72.45 ? CAX Y01 1210 A 1 HETATM 34 O OAH Y01 . . . K 5 145.738 153.452 168.771 1 72.45 ? OAH Y01 1210 A 1 HETATM 35 O OAF Y01 . . . K 5 144.078 151.978 168.473 1 72.45 ? OAF Y01 1210 A 1 HETATM 36 H HAA1 Y01 . . . K 5 142.407 154.521 148.98 1 72.45 ? HAA1 Y01 1210 A 1 HETATM 37 H HAA2 Y01 . . . K 5 141.53 153.115 149.55 1 72.45 ? HAA2 Y01 1210 A 1 HETATM 38 H HAA3 Y01 . . . K 5 141.512 153.556 147.836 1 72.45 ? HAA3 Y01 1210 A 1 HETATM 39 H HBA Y01 . . . K 5 143.898 153.04 147.639 1 72.45 ? HBA Y01 1210 A 1 HETATM 40 H HAB1 Y01 . . . K 5 143.833 150.599 147.809 1 72.45 ? HAB1 Y01 1210 A 1 HETATM 41 H HAB2 Y01 . . . K 5 142.284 151.199 147.226 1 72.45 ? HAB2 Y01 1210 A 1 HETATM 42 H HAB3 Y01 . . . K 5 142.447 150.665 148.908 1 72.45 ? HAB3 Y01 1210 A 1 HETATM 43 H HAN1 Y01 . . . K 5 145.32 153.046 149.348 1 72.45 ? HAN1 Y01 1210 A 1 HETATM 44 H HAN2 Y01 . . . K 5 144.572 151.496 149.881 1 72.45 ? HAN2 Y01 1210 A 1 HETATM 45 H HAJ1 Y01 . . . K 5 142.962 152.806 151.3 1 72.45 ? HAJ1 Y01 1210 A 1 HETATM 46 H HAJ2 Y01 . . . K 5 143.83 154.299 150.883 1 72.45 ? HAJ2 Y01 1210 A 1 HETATM 47 H HAO1 Y01 . . . K 5 145.485 153.909 152.323 1 72.45 ? HAO1 Y01 1210 A 1 HETATM 48 H HAO2 Y01 . . . K 5 145.695 152.229 151.759 1 72.45 ? HAO2 Y01 1210 A 1 HETATM 49 H HBB Y01 . . . K 5 143.266 152.87 153.556 1 72.45 ? HBB Y01 1210 A 1 HETATM 50 H HAC1 Y01 . . . K 5 144.921 150.356 153.562 1 72.45 ? HAC1 Y01 1210 A 1 HETATM 51 H HAC2 Y01 . . . K 5 143.914 150.679 152.153 1 72.45 ? HAC2 Y01 1210 A 1 HETATM 52 H HAC3 Y01 . . . K 5 143.156 150.595 153.719 1 72.45 ? HAC3 Y01 1210 A 1 HETATM 53 H HBE Y01 . . . K 5 146.135 152.401 154.422 1 72.45 ? HBE Y01 1210 A 1 HETATM 54 H HAP1 Y01 . . . K 5 145.846 154.848 154.405 1 72.45 ? HAP1 Y01 1210 A 1 HETATM 55 H HAP2 Y01 . . . K 5 144.111 154.75 154.581 1 72.45 ? HAP2 Y01 1210 A 1 HETATM 56 H HAQ1 Y01 . . . K 5 144.319 154.929 156.931 1 72.45 ? HAQ1 Y01 1210 A 1 HETATM 57 H HAQ2 Y01 . . . K 5 146.016 155.229 156.704 1 72.45 ? HAQ2 Y01 1210 A 1 HETATM 58 H HBG Y01 . . . K 5 146.659 152.92 156.793 1 72.45 ? HBG Y01 1210 A 1 HETATM 59 H HBD Y01 . . . K 5 144.34 152.915 158.739 1 72.45 ? HBD Y01 1210 A 1 HETATM 60 H HAE1 Y01 . . . K 5 142.623 151.668 155.623 1 72.45 ? HAE1 Y01 1210 A 1 HETATM 61 H HAE2 Y01 . . . K 5 142.795 153.279 156.255 1 72.45 ? HAE2 Y01 1210 A 1 HETATM 62 H HAE3 Y01 . . . K 5 142.925 151.895 157.324 1 72.45 ? HAE3 Y01 1210 A 1 HETATM 63 H HAU1 Y01 . . . K 5 146.28 150.669 155.92 1 72.45 ? HAU1 Y01 1210 A 1 HETATM 64 H HAU2 Y01 . . . K 5 144.615 150.035 155.812 1 72.45 ? HAU2 Y01 1210 A 1 HETATM 65 H HAS1 Y01 . . . K 5 145.803 149.412 157.927 1 72.45 ? HAS1 Y01 1210 A 1 HETATM 66 H HAS2 Y01 . . . K 5 144.224 150.198 158.12 1 72.45 ? HAS2 Y01 1210 A 1 HETATM 67 H HBF Y01 . . . K 5 147.002 151.396 158.616 1 72.45 ? HBF Y01 1210 A 1 HETATM 68 H HAK1 Y01 . . . K 5 145.649 154.837 159.221 1 72.45 ? HAK1 Y01 1210 A 1 HETATM 69 H HAK2 Y01 . . . K 5 147.176 153.964 158.796 1 72.45 ? HAK2 Y01 1210 A 1 HETATM 70 H HAI Y01 . . . K 5 146.701 154.34 161.178 1 72.45 ? HAI Y01 1210 A 1 HETATM 71 H HAV1 Y01 . . . K 5 147.162 153.079 162.961 1 72.45 ? HAV1 Y01 1210 A 1 HETATM 72 H HAV2 Y01 . . . K 5 145.561 152.39 163.209 1 72.45 ? HAV2 Y01 1210 A 1 HETATM 73 H HBC Y01 . . . K 5 148.246 150.927 162.839 1 72.45 ? HBC Y01 1210 A 1 HETATM 74 H HAD1 Y01 . . . K 5 143.547 151.264 160.051 1 72.45 ? HAD1 Y01 1210 A 1 HETATM 75 H HAD2 Y01 . . . K 5 144.043 151.204 161.74 1 72.45 ? HAD2 Y01 1210 A 1 HETATM 76 H HAD3 Y01 . . . K 5 144.083 149.743 160.753 1 72.45 ? HAD3 Y01 1210 A 1 HETATM 77 H HAT1 Y01 . . . K 5 147.648 150.187 160.423 1 72.45 ? HAT1 Y01 1210 A 1 HETATM 78 H HAT2 Y01 . . . K 5 146.268 149.063 160.231 1 72.45 ? HAT2 Y01 1210 A 1 HETATM 79 H HAR1 Y01 . . . K 5 147.294 148.836 162.466 1 72.45 ? HAR1 Y01 1210 A 1 HETATM 80 H HAR2 Y01 . . . K 5 145.629 149.437 162.622 1 72.45 ? HAR2 Y01 1210 A 1 HETATM 81 H HAM1 Y01 . . . K 5 146.118 153.115 165.855 1 72.45 ? HAM1 Y01 1210 A 1 HETATM 82 H HAM2 Y01 . . . K 5 147.604 153.062 166.869 1 72.45 ? HAM2 Y01 1210 A 1 HETATM 83 H HAL1 Y01 . . . K 5 146.887 151.043 167.98 1 72.45 ? HAL1 Y01 1210 A 1 HETATM 84 H HAL2 Y01 . . . K 5 145.528 150.815 166.84 1 72.45 ? HAL2 Y01 1210 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 84 #