data_7M5V # _model_server_result.job_id TgOvSjmcKD-YIliRfBCqsQ _model_server_result.datetime_utc '2024-11-04 22:33:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":1221}' # _entry.id 7M5V # _exptl.entry_id 7M5V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 142.282 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M5V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 T N N ? 6 U N N ? 6 V N N ? 6 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 1033 A ASN 1033 1_555 S C1 NAG . A NAG 1218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.638 sing metalc ? metalc1 A OD2 ASP 513 A ASP 513 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A O THR 515 A THR 515 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc3 A OG1 THR 515 A THR 515 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc4 B MG MG . A MG 1201 1_555 X O1G ANP . A ANP 1223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7M5V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1201 1201 MG MG . C 3 1DO A 1 1202 1202 1DO 1DO . D 4 LMT A 1 1203 1203 LMT LMT . E 5 Y01 A 1 1204 1204 Y01 Y01 . F 5 Y01 A 1 1205 1205 Y01 Y01 . G 6 D10 A 1 1206 1206 D10 D10 . H 7 D12 A 1 1207 1207 D12 D12 . I 3 1DO A 1 1208 1208 1DO 1DO . J 3 1DO A 1 1209 1209 1DO 1DO . K 5 Y01 A 1 1210 1210 Y01 Y01 . L 5 Y01 A 1 1211 1211 Y01 Y01 . M 7 D12 A 1 1212 1212 D12 D12 . N 6 D10 A 1 1213 1213 D10 D10 . O 6 D10 A 1 1214 1214 D10 D10 . P 6 D10 A 1 1215 1215 D10 D10 . Q 6 D10 A 1 1216 1216 D10 D10 . R 3 1DO A 1 1217 1217 1DO 1DO . S 8 NAG A 1 1218 1218 NAG NAG . T 6 D10 A 1 1219 1219 D10 D10 . U 6 D10 A 1 1220 1220 D10 D10 . V 6 D10 A 1 1221 1221 D10 D10 . W 6 D10 A 1 1222 1222 D10 D10 . X 9 ANP A 1 1223 1223 ANP ANP . Y 10 EUJ A 1 1224 1224 EUJ EUJ . Z 11 HOH A 1 1301 1301 HOH HOH . Z 11 HOH A 2 1302 1302 HOH HOH . Z 11 HOH A 3 1303 1303 HOH HOH . Z 11 HOH A 4 1304 1304 HOH HOH . Z 11 HOH A 5 1305 1305 HOH HOH . Z 11 HOH A 6 1306 1306 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . V 6 142.395 134.492 127.726 1 72.7 ? C1 D10 1221 A 1 HETATM 2 C C2 D10 . . . V 6 142.261 133.089 128.277 1 72.7 ? C2 D10 1221 A 1 HETATM 3 C C3 D10 . . . V 6 142.298 133.203 129.788 1 72.7 ? C3 D10 1221 A 1 HETATM 4 C C4 D10 . . . V 6 140.973 133.295 130.469 1 72.7 ? C4 D10 1221 A 1 HETATM 5 C C5 D10 . . . V 6 141.103 132.98 131.947 1 72.7 ? C5 D10 1221 A 1 HETATM 6 C C6 D10 . . . V 6 142.053 133.889 132.694 1 72.7 ? C6 D10 1221 A 1 HETATM 7 C C7 D10 . . . V 6 141.827 133.852 134.212 1 72.7 ? C7 D10 1221 A 1 HETATM 8 C C8 D10 . . . V 6 143.133 134.037 134.967 1 72.7 ? C8 D10 1221 A 1 HETATM 9 C C9 D10 . . . V 6 142.89 134.771 136.281 1 72.7 ? C9 D10 1221 A 1 HETATM 10 C C10 D10 . . . V 6 142.099 133.867 137.211 1 72.7 ? C10 D10 1221 A 1 HETATM 11 H H11 D10 . . . V 6 142.26 134.586 126.667 1 72.7 ? H11 D10 1221 A 1 HETATM 12 H H12 D10 . . . V 6 143.403 134.893 127.983 1 72.7 ? H12 D10 1221 A 1 HETATM 13 H H13 D10 . . . V 6 141.685 135.172 128.23 1 72.7 ? H13 D10 1221 A 1 HETATM 14 H H21 D10 . . . V 6 143.025 132.39 127.883 1 72.7 ? H21 D10 1221 A 1 HETATM 15 H H22 D10 . . . V 6 141.31 132.607 127.91 1 72.7 ? H22 D10 1221 A 1 HETATM 16 H H31 D10 . . . V 6 142.921 134.094 130.08 1 72.7 ? H31 D10 1221 A 1 HETATM 17 H H32 D10 . . . V 6 142.91 132.36 130.208 1 72.7 ? H32 D10 1221 A 1 HETATM 18 H H41 D10 . . . V 6 140.243 132.62 129.954 1 72.7 ? H41 D10 1221 A 1 HETATM 19 H H42 D10 . . . V 6 140.482 134.304 130.346 1 72.7 ? H42 D10 1221 A 1 HETATM 20 H H51 D10 . . . V 6 141.413 131.912 132.085 1 72.7 ? H51 D10 1221 A 1 HETATM 21 H H52 D10 . . . V 6 140.083 132.992 132.418 1 72.7 ? H52 D10 1221 A 1 HETATM 22 H H61 D10 . . . V 6 141.934 134.934 132.334 1 72.7 ? H61 D10 1221 A 1 HETATM 23 H H62 D10 . . . V 6 143.094 133.643 132.431 1 72.7 ? H62 D10 1221 A 1 HETATM 24 H H71 D10 . . . V 6 141.385 132.893 134.564 1 72.7 ? H71 D10 1221 A 1 HETATM 25 H H72 D10 . . . V 6 141.061 134.593 134.504 1 72.7 ? H72 D10 1221 A 1 HETATM 26 H H81 D10 . . . V 6 143.876 134.602 134.363 1 72.7 ? H81 D10 1221 A 1 HETATM 27 H H82 D10 . . . V 6 143.609 133.054 135.14 1 72.7 ? H82 D10 1221 A 1 HETATM 28 H H91 D10 . . . V 6 142.362 135.737 136.115 1 72.7 ? H91 D10 1221 A 1 HETATM 29 H H92 D10 . . . V 6 143.851 135.076 136.74 1 72.7 ? H92 D10 1221 A 1 HETATM 30 H H101 D10 . . . V 6 142.549 132.882 137.334 1 72.7 ? H101 D10 1221 A 1 HETATM 31 H H102 D10 . . . V 6 142.014 134.314 138.21 1 72.7 ? H102 D10 1221 A 1 HETATM 32 H H103 D10 . . . V 6 141.067 133.712 136.858 1 72.7 ? H103 D10 1221 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #