data_7M5Y # _model_server_result.job_id 5wZs_pjSDFA3lu630v1_BQ _model_server_result.datetime_utc '2024-11-21 14:14:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1207}' # _entry.id 7M5Y # _exptl.entry_id 7M5Y _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M5Y _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 U N N ? 6 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 1033 A ASN 1033 1_555 W C1 NAG . A NAG 1222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? metalc ? metalc1 A OD2 ASP 513 A ASP 513 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc2 A OD1 ASP 513 A ASP 513 1_555 C MG MF4 . A MF4 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc3 A O THR 515 A THR 515 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc4 A OD1 ASP 878 A ASP 878 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 113 n n C1 C10 CLR sing 114 n n C1 H11 CLR sing 115 n n C1 H12 CLR sing 116 n n C2 C3 CLR sing 117 n n C2 H21 CLR sing 118 n n C2 H22 CLR sing 119 n n C3 C4 CLR sing 120 n n C3 O1 CLR sing 121 n n C3 H3 CLR sing 122 n n C4 C5 CLR sing 123 n n C4 H41 CLR sing 124 n n C4 H42 CLR sing 125 n n C5 C6 CLR doub 126 n n C5 C10 CLR sing 127 n n C6 C7 CLR sing 128 n n C6 H6 CLR sing 129 n n C7 C8 CLR sing 130 n n C7 H71 CLR sing 131 n n C7 H72 CLR sing 132 n n C8 C9 CLR sing 133 n n C8 C14 CLR sing 134 n n C8 H8 CLR sing 135 n n C9 C10 CLR sing 136 n n C9 C11 CLR sing 137 n n C9 H9 CLR sing 138 n n C10 C19 CLR sing 139 n n C11 C12 CLR sing 140 n n C11 H111 CLR sing 141 n n C11 H112 CLR sing 142 n n C12 C13 CLR sing 143 n n C12 H121 CLR sing 144 n n C12 H122 CLR sing 145 n n C13 C14 CLR sing 146 n n C13 C17 CLR sing 147 n n C13 C18 CLR sing 148 n n C14 C15 CLR sing 149 n n C14 H14 CLR sing 150 n n C15 C16 CLR sing 151 n n C15 H151 CLR sing 152 n n C15 H152 CLR sing 153 n n C16 C17 CLR sing 154 n n C16 H161 CLR sing 155 n n C16 H162 CLR sing 156 n n C17 C20 CLR sing 157 n n C17 H17 CLR sing 158 n n C18 H181 CLR sing 159 n n C18 H182 CLR sing 160 n n C18 H183 CLR sing 161 n n C19 H191 CLR sing 162 n n C19 H192 CLR sing 163 n n C19 H193 CLR sing 164 n n C20 C21 CLR sing 165 n n C20 C22 CLR sing 166 n n C20 H20 CLR sing 167 n n C21 H211 CLR sing 168 n n C21 H212 CLR sing 169 n n C21 H213 CLR sing 170 n n C22 C23 CLR sing 171 n n C22 H221 CLR sing 172 n n C22 H222 CLR sing 173 n n C23 C24 CLR sing 174 n n C23 H231 CLR sing 175 n n C23 H232 CLR sing 176 n n C24 C25 CLR sing 177 n n C24 H241 CLR sing 178 n n C24 H242 CLR sing 179 n n C25 C26 CLR sing 180 n n C25 C27 CLR sing 181 n n C25 H25 CLR sing 182 n n C26 H261 CLR sing 183 n n C26 H262 CLR sing 184 n n C26 H263 CLR sing 185 n n C27 H271 CLR sing 186 n n C27 H272 CLR sing 187 n n C27 H273 CLR sing 188 n n O1 H1 CLR sing 189 n n # _atom_sites.entry_id 7M5Y _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1201 1201 MG MG . C 3 MF4 A 1 1202 1202 MF4 MF4 . D 4 Y01 A 1 1203 1203 Y01 Y01 . E 5 LMT A 1 1204 1204 LMT LMT . F 4 Y01 A 1 1205 1205 Y01 Y01 . G 6 CLR A 1 1206 1206 CLR CLR . H 6 CLR A 1 1207 1207 CLR CLR . I 4 Y01 A 1 1208 1208 Y01 Y01 . J 7 D10 A 1 1209 1209 D10 D10 . K 7 D10 A 1 1210 1210 D10 D10 . L 7 D10 A 1 1211 1211 D10 D10 . M 7 D10 A 1 1212 1212 D10 D10 . N 7 D10 A 1 1213 1213 D10 D10 . O 7 D10 A 1 1214 1214 D10 D10 . P 8 C14 A 1 1215 1215 C14 C14 . Q 9 D12 A 1 1216 1216 D12 D12 . R 7 D10 A 1 1217 1217 D10 D10 . S 7 D10 A 1 1218 1218 D10 D10 . T 7 D10 A 1 1219 1219 D10 D10 . U 6 CLR A 1 1220 1220 CLR CLR . V 6 CLR A 1 1221 1221 CLR CLR . W 10 NAG A 1 1222 1222 NAG NAG . X 11 SPK A 1 1223 1223 SPK SPK . Y 12 EUJ A 1 1224 1224 EUJ EUJ . Z 13 HOH A 1 1301 1301 HOH HOH . Z 13 HOH A 2 1302 1302 HOH HOH . Z 13 HOH A 3 1303 1303 HOH HOH . Z 13 HOH A 4 1304 1304 HOH HOH . Z 13 HOH A 5 1305 1305 HOH HOH . Z 13 HOH A 6 1306 1306 HOH HOH . Z 13 HOH A 7 1307 1307 HOH HOH . Z 13 HOH A 8 1308 1308 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . H 6 173.765 151.582 157.734 1 92.3 ? C1 CLR 1207 A 1 HETATM 2 C C2 CLR . . . H 6 173.226 151.302 156.321 1 92.3 ? C2 CLR 1207 A 1 HETATM 3 C C3 CLR . . . H 6 171.899 151.968 156.142 1 92.3 ? C3 CLR 1207 A 1 HETATM 4 C C4 CLR . . . H 6 172.081 153.465 156.315 1 92.3 ? C4 CLR 1207 A 1 HETATM 5 C C5 CLR . . . H 6 172.725 153.861 157.632 1 92.3 ? C5 CLR 1207 A 1 HETATM 6 C C6 CLR . . . H 6 172.236 154.885 158.318 1 92.3 ? C6 CLR 1207 A 1 HETATM 7 C C7 CLR . . . H 6 172.67 155.256 159.703 1 92.3 ? C7 CLR 1207 A 1 HETATM 8 C C8 CLR . . . H 6 174.072 154.75 160.035 1 92.3 ? C8 CLR 1207 A 1 HETATM 9 C C9 CLR . . . H 6 174.206 153.272 159.614 1 92.3 ? C9 CLR 1207 A 1 HETATM 10 C C10 CLR . . . H 6 173.97 153.083 158.075 1 92.3 ? C10 CLR 1207 A 1 HETATM 11 C C11 CLR . . . H 6 175.513 152.632 160.14 1 92.3 ? C11 CLR 1207 A 1 HETATM 12 C C12 CLR . . . H 6 175.899 152.955 161.601 1 92.3 ? C12 CLR 1207 A 1 HETATM 13 C C13 CLR . . . H 6 175.83 154.463 161.887 1 92.3 ? C13 CLR 1207 A 1 HETATM 14 C C14 CLR . . . H 6 174.395 154.903 161.518 1 92.3 ? C14 CLR 1207 A 1 HETATM 15 C C15 CLR . . . H 6 174.188 156.263 162.193 1 92.3 ? C15 CLR 1207 A 1 HETATM 16 C C16 CLR . . . H 6 175.142 156.249 163.402 1 92.3 ? C16 CLR 1207 A 1 HETATM 17 C C17 CLR . . . H 6 175.903 154.898 163.382 1 92.3 ? C17 CLR 1207 A 1 HETATM 18 C C18 CLR . . . H 6 176.893 155.222 161.075 1 92.3 ? C18 CLR 1207 A 1 HETATM 19 C C19 CLR . . . H 6 175.166 153.619 157.268 1 92.3 ? C19 CLR 1207 A 1 HETATM 20 C C20 CLR . . . H 6 177.255 155.005 164.116 1 92.3 ? C20 CLR 1207 A 1 HETATM 21 C C21 CLR . . . H 6 178.284 153.981 163.652 1 92.3 ? C21 CLR 1207 A 1 HETATM 22 C C22 CLR . . . H 6 177.007 154.861 165.621 1 92.3 ? C22 CLR 1207 A 1 HETATM 23 C C23 CLR . . . H 6 177.938 155.626 166.51 1 92.3 ? C23 CLR 1207 A 1 HETATM 24 C C24 CLR . . . H 6 177.363 155.83 167.878 1 92.3 ? C24 CLR 1207 A 1 HETATM 25 C C25 CLR . . . H 6 178.384 155.962 169.028 1 92.3 ? C25 CLR 1207 A 1 HETATM 26 C C26 CLR . . . H 6 179.502 156.916 168.644 1 92.3 ? C26 CLR 1207 A 1 HETATM 27 C C27 CLR . . . H 6 178.962 154.614 169.474 1 92.3 ? C27 CLR 1207 A 1 HETATM 28 O O1 CLR . . . H 6 171.372 151.674 154.842 1 92.3 ? O1 CLR 1207 A 1 HETATM 29 H H11 CLR . . . H 6 173.142 151.199 158.386 1 92.3 ? H11 CLR 1207 A 1 HETATM 30 H H12 CLR . . . H 6 174.623 151.12 157.838 1 92.3 ? H12 CLR 1207 A 1 HETATM 31 H H21 CLR . . . H 6 173.858 151.645 155.655 1 92.3 ? H21 CLR 1207 A 1 HETATM 32 H H22 CLR . . . H 6 173.131 150.336 156.19 1 92.3 ? H22 CLR 1207 A 1 HETATM 33 H H3 CLR . . . H 6 171.272 151.638 156.836 1 92.3 ? H3 CLR 1207 A 1 HETATM 34 H H41 CLR . . . H 6 171.205 153.898 156.248 1 92.3 ? H41 CLR 1207 A 1 HETATM 35 H H42 CLR . . . H 6 172.636 153.8 155.58 1 92.3 ? H42 CLR 1207 A 1 HETATM 36 H H6 CLR . . . H 6 171.569 155.41 157.91 1 92.3 ? H6 CLR 1207 A 1 HETATM 37 H H71 CLR . . . H 6 172.035 154.882 160.349 1 92.3 ? H71 CLR 1207 A 1 HETATM 38 H H72 CLR . . . H 6 172.654 156.232 159.794 1 92.3 ? H72 CLR 1207 A 1 HETATM 39 H H8 CLR . . . H 6 174.723 155.281 159.515 1 92.3 ? H8 CLR 1207 A 1 HETATM 40 H H9 CLR . . . H 6 173.469 152.794 160.064 1 92.3 ? H9 CLR 1207 A 1 HETATM 41 H H111 CLR . . . H 6 176.245 152.915 159.563 1 92.3 ? H111 CLR 1207 A 1 HETATM 42 H H112 CLR . . . H 6 175.435 151.663 160.052 1 92.3 ? H112 CLR 1207 A 1 HETATM 43 H H121 CLR . . . H 6 176.806 152.635 161.769 1 92.3 ? H121 CLR 1207 A 1 HETATM 44 H H122 CLR . . . H 6 175.293 152.484 162.208 1 92.3 ? H122 CLR 1207 A 1 HETATM 45 H H14 CLR . . . H 6 173.798 154.276 161.985 1 92.3 ? H14 CLR 1207 A 1 HETATM 46 H H151 CLR . . . H 6 173.265 156.369 162.481 1 92.3 ? H151 CLR 1207 A 1 HETATM 47 H H152 CLR . . . H 6 174.412 156.987 161.583 1 92.3 ? H152 CLR 1207 A 1 HETATM 48 H H161 CLR . . . H 6 174.638 156.337 164.235 1 92.3 ? H161 CLR 1207 A 1 HETATM 49 H H162 CLR . . . H 6 175.776 156.991 163.342 1 92.3 ? H162 CLR 1207 A 1 HETATM 50 H H17 CLR . . . H 6 175.356 154.253 163.887 1 92.3 ? H17 CLR 1207 A 1 HETATM 51 H H181 CLR . . . H 6 177.405 154.593 160.536 1 92.3 ? H181 CLR 1207 A 1 HETATM 52 H H182 CLR . . . H 6 177.493 155.689 161.682 1 92.3 ? H182 CLR 1207 A 1 HETATM 53 H H183 CLR . . . H 6 176.462 155.87 160.493 1 92.3 ? H183 CLR 1207 A 1 HETATM 54 H H191 CLR . . . H 6 175.874 152.957 157.263 1 92.3 ? H191 CLR 1207 A 1 HETATM 55 H H192 CLR . . . H 6 175.493 154.435 157.675 1 92.3 ? H192 CLR 1207 A 1 HETATM 56 H H193 CLR . . . H 6 174.888 153.8 156.358 1 92.3 ? H193 CLR 1207 A 1 HETATM 57 H H20 CLR . . . H 6 177.621 155.904 163.953 1 92.3 ? H20 CLR 1207 A 1 HETATM 58 H H211 CLR . . . H 6 178.976 153.889 164.329 1 92.3 ? H211 CLR 1207 A 1 HETATM 59 H H212 CLR . . . H 6 178.687 154.275 162.817 1 92.3 ? H212 CLR 1207 A 1 HETATM 60 H H213 CLR . . . H 6 177.85 153.122 163.517 1 92.3 ? H213 CLR 1207 A 1 HETATM 61 H H221 CLR . . . H 6 177.07 153.911 165.854 1 92.3 ? H221 CLR 1207 A 1 HETATM 62 H H222 CLR . . . H 6 176.091 155.155 165.812 1 92.3 ? H222 CLR 1207 A 1 HETATM 63 H H231 CLR . . . H 6 178.126 156.5 166.107 1 92.3 ? H231 CLR 1207 A 1 HETATM 64 H H232 CLR . . . H 6 178.785 155.138 166.587 1 92.3 ? H232 CLR 1207 A 1 HETATM 65 H H241 CLR . . . H 6 176.771 155.074 168.078 1 92.3 ? H241 CLR 1207 A 1 HETATM 66 H H242 CLR . . . H 6 176.812 156.641 167.862 1 92.3 ? H242 CLR 1207 A 1 HETATM 67 H H25 CLR . . . H 6 177.91 156.353 169.801 1 92.3 ? H25 CLR 1207 A 1 HETATM 68 H H261 CLR . . . H 6 179.926 157.26 169.449 1 92.3 ? H261 CLR 1207 A 1 HETATM 69 H H262 CLR . . . H 6 179.134 157.656 168.13 1 92.3 ? H262 CLR 1207 A 1 HETATM 70 H H263 CLR . . . H 6 180.16 156.443 168.106 1 92.3 ? H263 CLR 1207 A 1 HETATM 71 H H271 CLR . . . H 6 179.547 154.75 170.239 1 92.3 ? H271 CLR 1207 A 1 HETATM 72 H H272 CLR . . . H 6 179.47 154.222 168.743 1 92.3 ? H272 CLR 1207 A 1 HETATM 73 H H273 CLR . . . H 6 178.236 154.016 169.722 1 92.3 ? H273 CLR 1207 A 1 HETATM 74 H H1 CLR . . . H 6 171.229 150.849 154.771 1 92.3 ? H1 CLR 1207 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 74 #