data_7M5Y # _model_server_result.job_id WHRpgqqY9BGZM6kNrVH7qA _model_server_result.datetime_utc '2024-11-21 14:40:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1210}' # _entry.id 7M5Y # _exptl.entry_id 7M5Y _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 142.282 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M5Y _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 K N N ? 7 L N N ? 7 M N N ? 7 N N N ? 7 O N N ? 7 R N N ? 7 S N N ? 7 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 1033 A ASN 1033 1_555 W C1 NAG . A NAG 1222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? metalc ? metalc1 A OD2 ASP 513 A ASP 513 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc2 A OD1 ASP 513 A ASP 513 1_555 C MG MF4 . A MF4 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc3 A O THR 515 A THR 515 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc4 A OD1 ASP 878 A ASP 878 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D10 sing 203 n n C1 H11 D10 sing 204 n n C1 H12 D10 sing 205 n n C1 H13 D10 sing 206 n n C2 C3 D10 sing 207 n n C2 H21 D10 sing 208 n n C2 H22 D10 sing 209 n n C3 C4 D10 sing 210 n n C3 H31 D10 sing 211 n n C3 H32 D10 sing 212 n n C4 C5 D10 sing 213 n n C4 H41 D10 sing 214 n n C4 H42 D10 sing 215 n n C5 C6 D10 sing 216 n n C5 H51 D10 sing 217 n n C5 H52 D10 sing 218 n n C6 C7 D10 sing 219 n n C6 H61 D10 sing 220 n n C6 H62 D10 sing 221 n n C7 C8 D10 sing 222 n n C7 H71 D10 sing 223 n n C7 H72 D10 sing 224 n n C8 C9 D10 sing 225 n n C8 H81 D10 sing 226 n n C8 H82 D10 sing 227 n n C9 C10 D10 sing 228 n n C9 H91 D10 sing 229 n n C9 H92 D10 sing 230 n n C10 H101 D10 sing 231 n n C10 H102 D10 sing 232 n n C10 H103 D10 sing 233 n n # _atom_sites.entry_id 7M5Y _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1201 1201 MG MG . C 3 MF4 A 1 1202 1202 MF4 MF4 . D 4 Y01 A 1 1203 1203 Y01 Y01 . E 5 LMT A 1 1204 1204 LMT LMT . F 4 Y01 A 1 1205 1205 Y01 Y01 . G 6 CLR A 1 1206 1206 CLR CLR . H 6 CLR A 1 1207 1207 CLR CLR . I 4 Y01 A 1 1208 1208 Y01 Y01 . J 7 D10 A 1 1209 1209 D10 D10 . K 7 D10 A 1 1210 1210 D10 D10 . L 7 D10 A 1 1211 1211 D10 D10 . M 7 D10 A 1 1212 1212 D10 D10 . N 7 D10 A 1 1213 1213 D10 D10 . O 7 D10 A 1 1214 1214 D10 D10 . P 8 C14 A 1 1215 1215 C14 C14 . Q 9 D12 A 1 1216 1216 D12 D12 . R 7 D10 A 1 1217 1217 D10 D10 . S 7 D10 A 1 1218 1218 D10 D10 . T 7 D10 A 1 1219 1219 D10 D10 . U 6 CLR A 1 1220 1220 CLR CLR . V 6 CLR A 1 1221 1221 CLR CLR . W 10 NAG A 1 1222 1222 NAG NAG . X 11 SPK A 1 1223 1223 SPK SPK . Y 12 EUJ A 1 1224 1224 EUJ EUJ . Z 13 HOH A 1 1301 1301 HOH HOH . Z 13 HOH A 2 1302 1302 HOH HOH . Z 13 HOH A 3 1303 1303 HOH HOH . Z 13 HOH A 4 1304 1304 HOH HOH . Z 13 HOH A 5 1305 1305 HOH HOH . Z 13 HOH A 6 1306 1306 HOH HOH . Z 13 HOH A 7 1307 1307 HOH HOH . Z 13 HOH A 8 1308 1308 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . K 7 176.527 141.76 169.906 1 83.79 ? C1 D10 1210 A 1 HETATM 2 C C2 D10 . . . K 7 176.461 140.372 169.295 1 83.79 ? C2 D10 1210 A 1 HETATM 3 C C3 D10 . . . K 7 175.073 140.18 168.704 1 83.79 ? C3 D10 1210 A 1 HETATM 4 C C4 D10 . . . K 7 174.864 140.735 167.331 1 83.79 ? C4 D10 1210 A 1 HETATM 5 C C5 D10 . . . K 7 173.702 140.057 166.614 1 83.79 ? C5 D10 1210 A 1 HETATM 6 C C6 D10 . . . K 7 174.063 138.71 165.996 1 83.79 ? C6 D10 1210 A 1 HETATM 7 C C7 D10 . . . K 7 173.27 138.39 164.71 1 83.79 ? C7 D10 1210 A 1 HETATM 8 C C8 D10 . . . K 7 171.873 137.892 165.031 1 83.79 ? C8 D10 1210 A 1 HETATM 9 C C9 D10 . . . K 7 170.967 138.051 163.822 1 83.79 ? C9 D10 1210 A 1 HETATM 10 C C10 D10 . . . K 7 171.364 137.011 162.793 1 83.79 ? C10 D10 1210 A 1 HETATM 11 H H11 D10 . . . K 7 177.52 142.119 170.114 1 83.79 ? H11 D10 1210 A 1 HETATM 12 H H12 D10 . . . K 7 175.929 141.802 170.844 1 83.79 ? H12 D10 1210 A 1 HETATM 13 H H13 D10 . . . K 7 176.044 142.486 169.228 1 83.79 ? H13 D10 1210 A 1 HETATM 14 H H21 D10 . . . K 7 176.697 139.583 170.039 1 83.79 ? H21 D10 1210 A 1 HETATM 15 H H22 D10 . . . K 7 177.278 140.209 168.541 1 83.79 ? H22 D10 1210 A 1 HETATM 16 H H31 D10 . . . K 7 174.332 140.66 169.403 1 83.79 ? H31 D10 1210 A 1 HETATM 17 H H32 D10 . . . K 7 174.765 139.093 168.754 1 83.79 ? H32 D10 1210 A 1 HETATM 18 H H41 D10 . . . K 7 175.811 140.661 166.762 1 83.79 ? H41 D10 1210 A 1 HETATM 19 H H42 D10 . . . K 7 174.694 141.867 167.336 1 83.79 ? H42 D10 1210 A 1 HETATM 20 H H51 D10 . . . K 7 173.269 140.733 165.848 1 83.79 ? H51 D10 1210 A 1 HETATM 21 H H52 D10 . . . K 7 172.847 139.935 167.335 1 83.79 ? H52 D10 1210 A 1 HETATM 22 H H61 D10 . . . K 7 173.889 137.898 166.723 1 83.79 ? H61 D10 1210 A 1 HETATM 23 H H62 D10 . . . K 7 175.161 138.652 165.811 1 83.79 ? H62 D10 1210 A 1 HETATM 24 H H71 D10 . . . K 7 173.738 137.619 164.078 1 83.79 ? H71 D10 1210 A 1 HETATM 25 H H72 D10 . . . K 7 173.274 139.252 164.037 1 83.79 ? H72 D10 1210 A 1 HETATM 26 H H81 D10 . . . K 7 171.439 138.435 165.871 1 83.79 ? H81 D10 1210 A 1 HETATM 27 H H82 D10 . . . K 7 171.926 136.837 165.39 1 83.79 ? H82 D10 1210 A 1 HETATM 28 H H91 D10 . . . K 7 171.032 139.062 163.388 1 83.79 ? H91 D10 1210 A 1 HETATM 29 H H92 D10 . . . K 7 169.896 137.97 164.112 1 83.79 ? H92 D10 1210 A 1 HETATM 30 H H101 D10 . . . K 7 170.562 136.759 162.127 1 83.79 ? H101 D10 1210 A 1 HETATM 31 H H102 D10 . . . K 7 171.724 136.071 163.245 1 83.79 ? H102 D10 1210 A 1 HETATM 32 H H103 D10 . . . K 7 172.196 137.387 162.175 1 83.79 ? H103 D10 1210 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #