data_7M5Y
#
_model_server_result.job_id            oDxGqrLc-0vg8BNSpslQgg 
_model_server_result.datetime_utc      '2024-11-21 13:41:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7m5y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":1217}' 
#
_entry.id    7M5Y 
#
_exptl.entry_id    7M5Y 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              142.282 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DECANE 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7M5Y 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7M5Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 J N N 
? 7 K N N 
? 7 L N N 
? 7 M N N 
? 7 N N N 
? 7 O N N 
? 7 R N N 
? 7 S N N 
? 7 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 1033 A ASN 1033 1_555 W C1 NAG . A NAG 1222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
metalc ? metalc1 A OD2 ASP 513 A ASP 513 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc2 A OD1 ASP 513 A ASP 513 1_555 C MG MF4 . A MF4 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? 
metalc ? metalc3 A O THR 515 A THR 515 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc4 A OD1 ASP 878 A ASP 878 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
#
_chem_comp.formula           'C10 H22' 
_chem_comp.formula_weight    142.282 
_chem_comp.id                D10 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 D10 sing 203 n n 
C1 H11 D10 sing 204 n n 
C1 H12 D10 sing 205 n n 
C1 H13 D10 sing 206 n n 
C2 C3 D10 sing 207 n n 
C2 H21 D10 sing 208 n n 
C2 H22 D10 sing 209 n n 
C3 C4 D10 sing 210 n n 
C3 H31 D10 sing 211 n n 
C3 H32 D10 sing 212 n n 
C4 C5 D10 sing 213 n n 
C4 H41 D10 sing 214 n n 
C4 H42 D10 sing 215 n n 
C5 C6 D10 sing 216 n n 
C5 H51 D10 sing 217 n n 
C5 H52 D10 sing 218 n n 
C6 C7 D10 sing 219 n n 
C6 H61 D10 sing 220 n n 
C6 H62 D10 sing 221 n n 
C7 C8 D10 sing 222 n n 
C7 H71 D10 sing 223 n n 
C7 H72 D10 sing 224 n n 
C8 C9 D10 sing 225 n n 
C8 H81 D10 sing 226 n n 
C8 H82 D10 sing 227 n n 
C9 C10 D10 sing 228 n n 
C9 H91 D10 sing 229 n n 
C9 H92 D10 sing 230 n n 
C10 H101 D10 sing 231 n n 
C10 H102 D10 sing 232 n n 
C10 H103 D10 sing 233 n n 
#
_atom_sites.entry_id                     7M5Y 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 1201 1201 MG MG . 
C 3 MF4 A 1 1202 1202 MF4 MF4 . 
D 4 Y01 A 1 1203 1203 Y01 Y01 . 
E 5 LMT A 1 1204 1204 LMT LMT . 
F 4 Y01 A 1 1205 1205 Y01 Y01 . 
G 6 CLR A 1 1206 1206 CLR CLR . 
H 6 CLR A 1 1207 1207 CLR CLR . 
I 4 Y01 A 1 1208 1208 Y01 Y01 . 
J 7 D10 A 1 1209 1209 D10 D10 . 
K 7 D10 A 1 1210 1210 D10 D10 . 
L 7 D10 A 1 1211 1211 D10 D10 . 
M 7 D10 A 1 1212 1212 D10 D10 . 
N 7 D10 A 1 1213 1213 D10 D10 . 
O 7 D10 A 1 1214 1214 D10 D10 . 
P 8 C14 A 1 1215 1215 C14 C14 . 
Q 9 D12 A 1 1216 1216 D12 D12 . 
R 7 D10 A 1 1217 1217 D10 D10 . 
S 7 D10 A 1 1218 1218 D10 D10 . 
T 7 D10 A 1 1219 1219 D10 D10 . 
U 6 CLR A 1 1220 1220 CLR CLR . 
V 6 CLR A 1 1221 1221 CLR CLR . 
W 10 NAG A 1 1222 1222 NAG NAG . 
X 11 SPK A 1 1223 1223 SPK SPK . 
Y 12 EUJ A 1 1224 1224 EUJ EUJ . 
Z 13 HOH A 1 1301 1301 HOH HOH . 
Z 13 HOH A 2 1302 1302 HOH HOH . 
Z 13 HOH A 3 1303 1303 HOH HOH . 
Z 13 HOH A 4 1304 1304 HOH HOH . 
Z 13 HOH A 5 1305 1305 HOH HOH . 
Z 13 HOH A 6 1306 1306 HOH HOH . 
Z 13 HOH A 7 1307 1307 HOH HOH . 
Z 13 HOH A 8 1308 1308 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 D10 . . . R 7 155.415 138.039 202.397 1 78.99 ? C1 D10 1217 A 1 
HETATM 2 C C2 D10 . . . R 7 156.119 136.865 201.74 1 78.99 ? C2 D10 1217 A 1 
HETATM 3 C C3 D10 . . . R 7 156.401 137.234 200.292 1 78.99 ? C3 D10 1217 A 1 
HETATM 4 C C4 D10 . . . R 7 155.247 137.146 199.356 1 78.99 ? C4 D10 1217 A 1 
HETATM 5 C C5 D10 . . . R 7 155.566 137.859 198.06 1 78.99 ? C5 D10 1217 A 1 
HETATM 6 C C6 D10 . . . R 7 154.532 137.68 196.972 1 78.99 ? C6 D10 1217 A 1 
HETATM 7 C C7 D10 . . . R 7 155.144 137.791 195.568 1 78.99 ? C7 D10 1217 A 1 
HETATM 8 C C8 D10 . . . R 7 155.565 136.427 195.051 1 78.99 ? C8 D10 1217 A 1 
HETATM 9 C C9 D10 . . . R 7 156.475 136.576 193.837 1 78.99 ? C9 D10 1217 A 1 
HETATM 10 C C10 D10 . . . R 7 156.873 135.19 193.363 1 78.99 ? C10 D10 1217 A 1 
HETATM 11 H H11 D10 . . . R 7 154.416 138.23 202.063 1 78.99 ? H11 D10 1217 A 1 
HETATM 12 H H12 D10 . . . R 7 156.018 138.964 202.252 1 78.99 ? H12 D10 1217 A 1 
HETATM 13 H H13 D10 . . . R 7 155.388 137.899 203.493 1 78.99 ? H13 D10 1217 A 1 
HETATM 14 H H21 D10 . . . R 7 155.558 135.914 201.834 1 78.99 ? H21 D10 1217 A 1 
HETATM 15 H H22 D10 . . . R 7 157.067 136.612 202.297 1 78.99 ? H22 D10 1217 A 1 
HETATM 16 H H31 D10 . . . R 7 157.228 136.577 199.901 1 78.99 ? H31 D10 1217 A 1 
HETATM 17 H H32 D10 . . . R 7 156.888 138.243 200.243 1 78.99 ? H32 D10 1217 A 1 
HETATM 18 H H41 D10 . . . R 7 154.328 137.548 199.848 1 78.99 ? H41 D10 1217 A 1 
HETATM 19 H H42 D10 . . . R 7 154.943 136.081 199.134 1 78.99 ? H42 D10 1217 A 1 
HETATM 20 H H51 D10 . . . R 7 156.57 137.534 197.685 1 78.99 ? H51 D10 1217 A 1 
HETATM 21 H H52 D10 . . . R 7 155.735 138.942 198.272 1 78.99 ? H52 D10 1217 A 1 
HETATM 22 H H61 D10 . . . R 7 153.736 138.448 197.082 1 78.99 ? H61 D10 1217 A 1 
HETATM 23 H H62 D10 . . . R 7 153.992 136.73 197.107 1 78.99 ? H62 D10 1217 A 1 
HETATM 24 H H71 D10 . . . R 7 156.043 138.444 195.535 1 78.99 ? H71 D10 1217 A 1 
HETATM 25 H H72 D10 . . . R 7 154.444 138.305 194.884 1 78.99 ? H72 D10 1217 A 1 
HETATM 26 H H81 D10 . . . R 7 154.681 135.808 194.78 1 78.99 ? H81 D10 1217 A 1 
HETATM 27 H H82 D10 . . . R 7 156.063 135.858 195.857 1 78.99 ? H82 D10 1217 A 1 
HETATM 28 H H91 D10 . . . R 7 157.372 137.193 194.07 1 78.99 ? H91 D10 1217 A 1 
HETATM 29 H H92 D10 . . . R 7 155.967 137.146 193.034 1 78.99 ? H92 D10 1217 A 1 
HETATM 30 H H101 D10 . . . R 7 157.395 135.2 192.406 1 78.99 ? H101 D10 1217 A 1 
HETATM 31 H H102 D10 . . . R 7 155.995 134.541 193.256 1 78.99 ? H102 D10 1217 A 1 
HETATM 32 H H103 D10 . . . R 7 157.54 134.693 194.087 1 78.99 ? H103 D10 1217 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           32 
#