data_7M5Y # _model_server_result.job_id 1Tv2-LTwHtAR5Z0OhrO0cw _model_server_result.datetime_utc '2024-11-21 13:49:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":1222}' # _entry.id 7M5Y # _exptl.entry_id 7M5Y _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 10 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M5Y _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id W _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 1033 A ASN 1033 1_555 W C1 NAG . A NAG 1222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? metalc ? metalc1 A OD2 ASP 513 A ASP 513 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc2 A OD1 ASP 513 A ASP 513 1_555 C MG MF4 . A MF4 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc3 A O THR 515 A THR 515 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc4 A OD1 ASP 878 A ASP 878 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 607 n n C1 O1 NAG sing 608 n n C1 O5 NAG sing 609 n n C1 H1 NAG sing 610 n n C2 C3 NAG sing 611 n n C2 N2 NAG sing 612 n n C2 H2 NAG sing 613 n n C3 C4 NAG sing 614 n n C3 O3 NAG sing 615 n n C3 H3 NAG sing 616 n n C4 C5 NAG sing 617 n n C4 O4 NAG sing 618 n n C4 H4 NAG sing 619 n n C5 C6 NAG sing 620 n n C5 O5 NAG sing 621 n n C5 H5 NAG sing 622 n n C6 O6 NAG sing 623 n n C6 H61 NAG sing 624 n n C6 H62 NAG sing 625 n n C7 C8 NAG sing 626 n n C7 N2 NAG sing 627 n n C7 O7 NAG doub 628 n n C8 H81 NAG sing 629 n n C8 H82 NAG sing 630 n n C8 H83 NAG sing 631 n n N2 HN2 NAG sing 632 n n O1 HO1 NAG sing 633 n n O3 HO3 NAG sing 634 n n O4 HO4 NAG sing 635 n n O6 HO6 NAG sing 636 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7M5Y _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1201 1201 MG MG . C 3 MF4 A 1 1202 1202 MF4 MF4 . D 4 Y01 A 1 1203 1203 Y01 Y01 . E 5 LMT A 1 1204 1204 LMT LMT . F 4 Y01 A 1 1205 1205 Y01 Y01 . G 6 CLR A 1 1206 1206 CLR CLR . H 6 CLR A 1 1207 1207 CLR CLR . I 4 Y01 A 1 1208 1208 Y01 Y01 . J 7 D10 A 1 1209 1209 D10 D10 . K 7 D10 A 1 1210 1210 D10 D10 . L 7 D10 A 1 1211 1211 D10 D10 . M 7 D10 A 1 1212 1212 D10 D10 . N 7 D10 A 1 1213 1213 D10 D10 . O 7 D10 A 1 1214 1214 D10 D10 . P 8 C14 A 1 1215 1215 C14 C14 . Q 9 D12 A 1 1216 1216 D12 D12 . R 7 D10 A 1 1217 1217 D10 D10 . S 7 D10 A 1 1218 1218 D10 D10 . T 7 D10 A 1 1219 1219 D10 D10 . U 6 CLR A 1 1220 1220 CLR CLR . V 6 CLR A 1 1221 1221 CLR CLR . W 10 NAG A 1 1222 1222 NAG NAG . X 11 SPK A 1 1223 1223 SPK SPK . Y 12 EUJ A 1 1224 1224 EUJ EUJ . Z 13 HOH A 1 1301 1301 HOH HOH . Z 13 HOH A 2 1302 1302 HOH HOH . Z 13 HOH A 3 1303 1303 HOH HOH . Z 13 HOH A 4 1304 1304 HOH HOH . Z 13 HOH A 5 1305 1305 HOH HOH . Z 13 HOH A 6 1306 1306 HOH HOH . Z 13 HOH A 7 1307 1307 HOH HOH . Z 13 HOH A 8 1308 1308 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . W 10 169.708 166.913 204.425 1 88.08 ? C1 NAG 1222 A 1 HETATM 2 C C2 NAG . . . W 10 169.776 166.228 205.885 1 88.08 ? C2 NAG 1222 A 1 HETATM 3 C C3 NAG . . . W 10 171.228 165.736 206.247 1 88.08 ? C3 NAG 1222 A 1 HETATM 4 C C4 NAG . . . W 10 172.241 166.334 205.284 1 88.08 ? C4 NAG 1222 A 1 HETATM 5 C C5 NAG . . . W 10 171.838 167.774 205.013 1 88.08 ? C5 NAG 1222 A 1 HETATM 6 C C6 NAG . . . W 10 173.017 168.47 204.251 1 88.08 ? C6 NAG 1222 A 1 HETATM 7 C C7 NAG . . . W 10 168.702 166.834 208.028 1 88.08 ? C7 NAG 1222 A 1 HETATM 8 C C8 NAG . . . W 10 168.355 167.951 208.938 1 88.08 ? C8 NAG 1222 A 1 HETATM 9 N N2 NAG . . . W 10 169.383 167.235 206.866 1 88.08 ? N2 NAG 1222 A 1 HETATM 10 O O3 NAG . . . W 10 171.136 164.361 206.098 1 88.08 ? O3 NAG 1222 A 1 HETATM 11 O O4 NAG . . . W 10 173.458 166.264 205.94 1 88.08 ? O4 NAG 1222 A 1 HETATM 12 O O5 NAG . . . W 10 170.688 167.947 204.247 1 88.08 ? O5 NAG 1222 A 1 HETATM 13 O O6 NAG . . . W 10 174.175 168.339 204.995 1 88.08 ? O6 NAG 1222 A 1 HETATM 14 O O7 NAG . . . W 10 168.447 165.648 208.224 1 88.08 ? O7 NAG 1222 A 1 HETATM 15 H H2 NAG . . . W 10 169.1 165.329 205.855 1 88.08 ? H2 NAG 1222 A 1 HETATM 16 H H3 NAG . . . W 10 171.428 166.04 207.309 1 88.08 ? H3 NAG 1222 A 1 HETATM 17 H H4 NAG . . . W 10 172.227 165.732 204.342 1 88.08 ? H4 NAG 1222 A 1 HETATM 18 H H5 NAG . . . W 10 171.793 168.286 206.028 1 88.08 ? H5 NAG 1222 A 1 HETATM 19 H H61 NAG . . . W 10 172.682 169.498 204.011 1 88.08 ? H61 NAG 1222 A 1 HETATM 20 H H62 NAG . . . W 10 173.102 167.951 203.245 1 88.08 ? H62 NAG 1222 A 1 HETATM 21 H H81 NAG . . . W 10 167.904 167.521 209.827 1 88.08 ? H81 NAG 1222 A 1 HETATM 22 H H82 NAG . . . W 10 167.639 168.645 208.477 1 88.08 ? H82 NAG 1222 A 1 HETATM 23 H H83 NAG . . . W 10 169.244 168.521 209.23 1 88.08 ? H83 NAG 1222 A 1 HETATM 24 H HN2 NAG . . . W 10 169.58 168.222 206.727 1 88.08 ? HN2 NAG 1222 A 1 HETATM 25 H HO3 NAG . . . W 10 170.61 164.045 206.84 1 88.08 ? HO3 NAG 1222 A 1 HETATM 26 H HO4 NAG . . . W 10 173.407 166.845 206.723 1 88.08 ? HO4 NAG 1222 A 1 HETATM 27 H HO6 NAG . . . W 10 174.887 168.254 204.354 1 88.08 ? HO6 NAG 1222 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 507 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #