data_7M5Z # _model_server_result.job_id cTkzKksNsDBqBGHtw4AVkA _model_server_result.datetime_utc '2024-10-20 05:45:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 7M5Z # _exptl.entry_id 7M5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.593 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(butylamino)-N-[1-(3-fluoropropyl)piperidin-4-yl]-4-{[(1r,4r)-4-hydroxycyclohexyl]amino}pyrimidine-5-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M5Z _cell.length_a 70.203 _cell.length_b 91.272 _cell.length_c 100.804 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C23 H39 F N6 O2' _chem_comp.formula_weight 450.593 _chem_comp.id YR7 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(butylamino)-N-[1-(3-fluoropropyl)piperidin-4-yl]-4-{[(1r,4r)-4-hydroxycyclohexyl]amino}pyrimidine-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C18 YR7 sing 376 n n C19 F20 YR7 sing 377 n n C18 C17 YR7 sing 378 n n C17 N16 YR7 sing 379 n n N16 C15 YR7 sing 380 n n N16 C21 YR7 sing 381 n n C15 C14 YR7 sing 382 n n C21 C22 YR7 sing 383 n n C22 C13 YR7 sing 384 n n C14 C13 YR7 sing 385 n n C13 N12 YR7 sing 386 n n N12 C11 YR7 sing 387 n n C24 N25 YR7 doub 388 n y C24 C10 YR7 sing 389 n y C11 C10 YR7 sing 390 n n C11 O23 YR7 doub 391 n n N25 C26 YR7 sing 392 n y C10 C09 YR7 doub 393 n y C26 N32 YR7 doub 394 n y C26 N27 YR7 sing 395 n n C09 N32 YR7 sing 396 n y C09 N08 YR7 sing 397 n n C06 C05 YR7 sing 398 n n C06 C07 YR7 sing 399 n n N27 C28 YR7 sing 400 n n N08 C07 YR7 sing 401 n n C29 C28 YR7 sing 402 n n C29 C30 YR7 sing 403 n n C05 C02 YR7 sing 404 n n C07 C04 YR7 sing 405 n n C30 C31 YR7 sing 406 n n C02 O01 YR7 sing 407 n n C02 C03 YR7 sing 408 n n C04 C03 YR7 sing 409 n n C02 H1 YR7 sing 410 n n C03 H2 YR7 sing 411 n n C03 H3 YR7 sing 412 n n C04 H4 YR7 sing 413 n n C04 H5 YR7 sing 414 n n C05 H6 YR7 sing 415 n n C05 H7 YR7 sing 416 n n C06 H8 YR7 sing 417 n n C06 H9 YR7 sing 418 n n C07 H10 YR7 sing 419 n n N12 H11 YR7 sing 420 n n C13 H12 YR7 sing 421 n n C14 H13 YR7 sing 422 n n C14 H14 YR7 sing 423 n n C15 H15 YR7 sing 424 n n C15 H16 YR7 sing 425 n n C17 H17 YR7 sing 426 n n C17 H18 YR7 sing 427 n n C18 H19 YR7 sing 428 n n C18 H20 YR7 sing 429 n n C19 H21 YR7 sing 430 n n C19 H22 YR7 sing 431 n n C21 H23 YR7 sing 432 n n C21 H24 YR7 sing 433 n n C22 H25 YR7 sing 434 n n C22 H26 YR7 sing 435 n n C24 H27 YR7 sing 436 n n C28 H28 YR7 sing 437 n n C28 H29 YR7 sing 438 n n C29 H30 YR7 sing 439 n n C29 H31 YR7 sing 440 n n C30 H32 YR7 sing 441 n n C30 H33 YR7 sing 442 n n C31 H34 YR7 sing 443 n n C31 H35 YR7 sing 444 n n C31 H36 YR7 sing 445 n n N08 H37 YR7 sing 446 n n N27 H39 YR7 sing 447 n n O01 H40 YR7 sing 448 n n # _atom_sites.entry_id 7M5Z _atom_sites.fract_transf_matrix[1][1] 0.014244 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010956 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00992 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 YR7 A 1 901 901 YR7 001 . D 2 YR7 B 1 901 901 YR7 001 . E 3 HOH A 1 1001 4 HOH HOH . E 3 HOH A 2 1002 5 HOH HOH . E 3 HOH A 3 1003 2 HOH HOH . E 3 HOH A 4 1004 6 HOH HOH . E 3 HOH A 5 1005 1 HOH HOH . E 3 HOH A 6 1006 3 HOH HOH . F 3 HOH B 1 1001 8 HOH HOH . F 3 HOH B 2 1002 7 HOH HOH . F 3 HOH B 3 1003 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 YR7 . . . C 2 -13.642 -14.966 9.362 1 86.94 ? C02 YR7 901 A 1 HETATM 2 C C03 YR7 . . . C 2 -13.15 -16.082 10.288 1 88.13 ? C03 YR7 901 A 1 HETATM 3 C C04 YR7 . . . C 2 -12.163 -16.999 9.572 1 88.44 ? C04 YR7 901 A 1 HETATM 4 C C05 YR7 . . . C 2 -14.328 -15.521 8.109 1 82.84 ? C05 YR7 901 A 1 HETATM 5 C C06 YR7 . . . C 2 -13.378 -16.44 7.343 1 77.26 ? C06 YR7 901 A 1 HETATM 6 C C07 YR7 . . . C 2 -12.727 -17.507 8.24 1 83.79 ? C07 YR7 901 A 1 HETATM 7 C C09 YR7 . . . C 2 -12.048 -19.419 6.93 1 76.69 ? C09 YR7 901 A 1 HETATM 8 C C10 YR7 . . . C 2 -11.312 -19.954 5.902 1 79.06 ? C10 YR7 901 A 1 HETATM 9 C C11 YR7 . . . C 2 -10.055 -19.178 5.424 1 77.64 ? C11 YR7 901 A 1 HETATM 10 N N12 YR7 . . . C 2 -9.33 -19.54 4.211 1 76.13 ? N12 YR7 901 A 1 HETATM 11 C C13 YR7 . . . C 2 -8.156 -18.667 3.996 1 83.42 ? C13 YR7 901 A 1 HETATM 12 C C14 YR7 . . . C 2 -7.074 -19.532 3.607 1 85.49 ? C14 YR7 901 A 1 HETATM 13 C C15 YR7 . . . C 2 -7.077 -19.688 2.089 1 89.01 ? C15 YR7 901 A 1 HETATM 14 C C17 YR7 . . . C 2 -5.527 -18.345 1.406 1 74.81 ? C17 YR7 901 A 1 HETATM 15 C C18 YR7 . . . C 2 -5.086 -18.884 0.04 1 70.28 ? C18 YR7 901 A 1 HETATM 16 C C19 YR7 . . . C 2 -3.568 -18.858 -0.084 1 81.8 ? C19 YR7 901 A 1 HETATM 17 C C21 YR7 . . . C 2 -7.298 -17.262 2.112 1 78.01 ? C21 YR7 901 A 1 HETATM 18 C C22 YR7 . . . C 2 -8.443 -17.576 3.087 1 81.95 ? C22 YR7 901 A 1 HETATM 19 C C24 YR7 . . . C 2 -11.724 -21.181 5.4 1 76.59 ? C24 YR7 901 A 1 HETATM 20 C C26 YR7 . . . C 2 -13.481 -21.197 6.859 1 77.87 ? C26 YR7 901 A 1 HETATM 21 C C28 YR7 . . . C 2 -15.371 -20.974 8.427 1 82.33 ? C28 YR7 901 A 1 HETATM 22 C C29 YR7 . . . C 2 -16.551 -20.217 7.785 1 80.73 ? C29 YR7 901 A 1 HETATM 23 C C30 YR7 . . . C 2 -17.417 -19.536 8.854 1 74.08 ? C30 YR7 901 A 1 HETATM 24 C C31 YR7 . . . C 2 -16.542 -18.87 9.924 1 74.32 ? C31 YR7 901 A 1 HETATM 25 F F20 YR7 . . . C 2 -3.041 -19.389 1.058 1 86.36 ? F20 YR7 901 A 1 HETATM 26 N N08 YR7 . . . C 2 -11.659 -18.155 7.495 1 81.42 ? N08 YR7 901 A 1 HETATM 27 N N16 YR7 . . . C 2 -6.724 -18.431 1.483 1 81.51 ? N16 YR7 901 A 1 HETATM 28 N N25 YR7 . . . C 2 -12.813 -21.779 5.879 1 75.16 ? N25 YR7 901 A 1 HETATM 29 N N27 YR7 . . . C 2 -14.684 -21.81 7.429 1 82.35 ? N27 YR7 901 A 1 HETATM 30 N N32 YR7 . . . C 2 -13.118 -20.038 7.382 1 75.37 ? N32 YR7 901 A 1 HETATM 31 O O01 YR7 . . . C 2 -14.531 -14.134 10.072 1 95.66 ? O01 YR7 901 A 1 HETATM 32 O O23 YR7 . . . C 2 -9.647 -18.259 6.052 1 83.52 ? O23 YR7 901 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #