data_7M5Z
#
_model_server_result.job_id            wDtdAm0Hyqmy6l_7S7evZw 
_model_server_result.datetime_utc      '2024-10-20 05:39:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7m5z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    7M5Z 
#
_exptl.entry_id    7M5Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              450.593 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(butylamino)-N-[1-(3-fluoropropyl)piperidin-4-yl]-4-{[(1r,4r)-4-hydroxycyclohexyl]amino}pyrimidine-5-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7M5Z 
_cell.length_a            70.203 
_cell.length_b            91.272 
_cell.length_c            100.804 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7M5Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C23 H39 F N6 O2' 
_chem_comp.formula_weight    450.593 
_chem_comp.id                YR7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(butylamino)-N-[1-(3-fluoropropyl)piperidin-4-yl]-4-{[(1r,4r)-4-hydroxycyclohexyl]amino}pyrimidine-5-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 C18 YR7 sing 376 n n 
C19 F20 YR7 sing 377 n n 
C18 C17 YR7 sing 378 n n 
C17 N16 YR7 sing 379 n n 
N16 C15 YR7 sing 380 n n 
N16 C21 YR7 sing 381 n n 
C15 C14 YR7 sing 382 n n 
C21 C22 YR7 sing 383 n n 
C22 C13 YR7 sing 384 n n 
C14 C13 YR7 sing 385 n n 
C13 N12 YR7 sing 386 n n 
N12 C11 YR7 sing 387 n n 
C24 N25 YR7 doub 388 n y 
C24 C10 YR7 sing 389 n y 
C11 C10 YR7 sing 390 n n 
C11 O23 YR7 doub 391 n n 
N25 C26 YR7 sing 392 n y 
C10 C09 YR7 doub 393 n y 
C26 N32 YR7 doub 394 n y 
C26 N27 YR7 sing 395 n n 
C09 N32 YR7 sing 396 n y 
C09 N08 YR7 sing 397 n n 
C06 C05 YR7 sing 398 n n 
C06 C07 YR7 sing 399 n n 
N27 C28 YR7 sing 400 n n 
N08 C07 YR7 sing 401 n n 
C29 C28 YR7 sing 402 n n 
C29 C30 YR7 sing 403 n n 
C05 C02 YR7 sing 404 n n 
C07 C04 YR7 sing 405 n n 
C30 C31 YR7 sing 406 n n 
C02 O01 YR7 sing 407 n n 
C02 C03 YR7 sing 408 n n 
C04 C03 YR7 sing 409 n n 
C02 H1 YR7 sing 410 n n 
C03 H2 YR7 sing 411 n n 
C03 H3 YR7 sing 412 n n 
C04 H4 YR7 sing 413 n n 
C04 H5 YR7 sing 414 n n 
C05 H6 YR7 sing 415 n n 
C05 H7 YR7 sing 416 n n 
C06 H8 YR7 sing 417 n n 
C06 H9 YR7 sing 418 n n 
C07 H10 YR7 sing 419 n n 
N12 H11 YR7 sing 420 n n 
C13 H12 YR7 sing 421 n n 
C14 H13 YR7 sing 422 n n 
C14 H14 YR7 sing 423 n n 
C15 H15 YR7 sing 424 n n 
C15 H16 YR7 sing 425 n n 
C17 H17 YR7 sing 426 n n 
C17 H18 YR7 sing 427 n n 
C18 H19 YR7 sing 428 n n 
C18 H20 YR7 sing 429 n n 
C19 H21 YR7 sing 430 n n 
C19 H22 YR7 sing 431 n n 
C21 H23 YR7 sing 432 n n 
C21 H24 YR7 sing 433 n n 
C22 H25 YR7 sing 434 n n 
C22 H26 YR7 sing 435 n n 
C24 H27 YR7 sing 436 n n 
C28 H28 YR7 sing 437 n n 
C28 H29 YR7 sing 438 n n 
C29 H30 YR7 sing 439 n n 
C29 H31 YR7 sing 440 n n 
C30 H32 YR7 sing 441 n n 
C30 H33 YR7 sing 442 n n 
C31 H34 YR7 sing 443 n n 
C31 H35 YR7 sing 444 n n 
C31 H36 YR7 sing 445 n n 
N08 H37 YR7 sing 446 n n 
N27 H39 YR7 sing 447 n n 
O01 H40 YR7 sing 448 n n 
#
_atom_sites.entry_id                     7M5Z 
_atom_sites.fract_transf_matrix[1][1]    0.014244 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010956 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00992 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 YR7 A 1 901 901 YR7 001 . 
D 2 YR7 B 1 901 901 YR7 001 . 
E 3 HOH A 1 1001 4 HOH HOH . 
E 3 HOH A 2 1002 5 HOH HOH . 
E 3 HOH A 3 1003 2 HOH HOH . 
E 3 HOH A 4 1004 6 HOH HOH . 
E 3 HOH A 5 1005 1 HOH HOH . 
E 3 HOH A 6 1006 3 HOH HOH . 
F 3 HOH B 1 1001 8 HOH HOH . 
F 3 HOH B 2 1002 7 HOH HOH . 
F 3 HOH B 3 1003 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C02 YR7 . . . D 2 -12.052 15.356 9.484 1 86.43 ? C02 YR7 901 B 1 
HETATM 2 C C03 YR7 . . . D 2 -13.152 16.18 10.166 1 91.63 ? C03 YR7 901 B 1 
HETATM 3 C C04 YR7 . . . D 2 -14.115 16.827 9.171 1 82.02 ? C04 YR7 901 B 1 
HETATM 4 C C05 YR7 . . . D 2 -11.364 16.106 8.34 1 79.79 ? C05 YR7 901 B 1 
HETATM 5 C C06 YR7 . . . D 2 -12.356 16.745 7.368 1 80.46 ? C06 YR7 901 B 1 
HETATM 6 C C07 YR7 . . . D 2 -13.367 17.627 8.103 1 87.26 ? C07 YR7 901 B 1 
HETATM 7 C C09 YR7 . . . D 2 -14.109 19.49 6.55 1 78.72 ? C09 YR7 901 B 1 
HETATM 8 C C10 YR7 . . . D 2 -15.07 20.041 5.69 1 74.9 ? C10 YR7 901 B 1 
HETATM 9 C C11 YR7 . . . D 2 -16.39 19.271 5.353 1 74.99 ? C11 YR7 901 B 1 
HETATM 10 N N12 YR7 . . . D 2 -17.199 19.609 4.163 1 74.46 ? N12 YR7 901 B 1 
HETATM 11 C C13 YR7 . . . D 2 -18.446 18.825 3.925 1 72.91 ? C13 YR7 901 B 1 
HETATM 12 C C14 YR7 . . . D 2 -19.576 19.721 3.757 1 76.11 ? C14 YR7 901 B 1 
HETATM 13 C C15 YR7 . . . D 2 -19.893 20.092 2.305 1 76.35 ? C15 YR7 901 B 1 
HETATM 14 C C17 YR7 . . . D 2 -20.323 19.176 0.378 1 71.61 ? C17 YR7 901 B 1 
HETATM 15 C C18 YR7 . . . D 2 -21.546 18.313 0.03 1 68.44 ? C18 YR7 901 B 1 
HETATM 16 C C19 YR7 . . . D 2 -22.866 19.05 0.26 1 72.22 ? C19 YR7 901 B 1 
HETATM 17 C C21 YR7 . . . D 2 -18.654 18.287 1.469 1 66.43 ? C21 YR7 901 B 1 
HETATM 18 C C22 YR7 . . . D 2 -18.235 17.847 2.876 1 68.6 ? C22 YR7 901 B 1 
HETATM 19 C C24 YR7 . . . D 2 -14.811 21.302 5.158 1 69.55 ? C24 YR7 901 B 1 
HETATM 20 C C26 YR7 . . . D 2 -12.795 21.363 6.288 1 77.1 ? C26 YR7 901 B 1 
HETATM 21 C C28 YR7 . . . D 2 -10.738 21.658 7.762 1 83.76 ? C28 YR7 901 B 1 
HETATM 22 C C29 YR7 . . . D 2 -9.726 20.571 7.348 1 80.89 ? C29 YR7 901 B 1 
HETATM 23 C C30 YR7 . . . D 2 -9.145 19.822 8.558 1 77.19 ? C30 YR7 901 B 1 
HETATM 24 C C31 YR7 . . . D 2 -10.221 19.471 9.593 1 77.44 ? C31 YR7 901 B 1 
HETATM 25 F F20 YR7 . . . D 2 -22.972 19.406 1.576 1 79.2 ? F20 YR7 901 B 1 
HETATM 26 N N08 YR7 . . . D 2 -14.326 18.173 7.14 1 86.65 ? N08 YR7 901 B 1 
HETATM 27 N N16 YR7 . . . D 2 -19.941 18.915 1.491 1 70.86 ? N16 YR7 901 B 1 
HETATM 28 N N25 YR7 . . . D 2 -13.676 21.926 5.474 1 75.42 ? N25 YR7 901 B 1 
HETATM 29 N N27 YR7 . . . D 2 -11.552 22.09 6.609 1 72.06 ? N27 YR7 901 B 1 
HETATM 30 N N32 YR7 . . . D 2 -12.995 20.164 6.826 1 75.86 ? N32 YR7 901 B 1 
HETATM 31 O O01 YR7 . . . D 2 -11.074 15.024 10.443 1 89.63 ? O01 YR7 901 B 1 
HETATM 32 O O23 YR7 . . . D 2 -16.756 18.399 6.069 1 79.55 ? O23 YR7 901 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           32 
#