data_7M6A # _model_server_result.job_id hCEuxKJ2lS59OZcx_RJVjw _model_server_result.datetime_utc '2024-12-03 19:07:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":5304}' # _entry.id 7M6A # _exptl.entry_id 7M6A _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 194.191 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CAFFEINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M6A _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 P N N ? 6 T N N ? 6 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 230 A CYS 230 1_555 B SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 B SG CYS 4876 A CYS 4876 1_555 B SG CYS 4882 A CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 F SG CYS 230 G CYS 230 1_555 F SG CYS 253 G CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 F SG CYS 4876 G CYS 4876 1_555 F SG CYS 4882 G CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 G SG CYS 230 B CYS 230 1_555 G SG CYS 253 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 G SG CYS 4876 B CYS 4876 1_555 G SG CYS 4882 B CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 H SG CYS 230 I CYS 230 1_555 H SG CYS 253 I CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 H SG CYS 4876 I CYS 4876 1_555 H SG CYS 4882 I CYS 4882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 B NZ LYS 4214 A LYS 4214 1_555 I O1A ATP . A ATP 5301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale2 F NZ LYS 4214 G LYS 4214 1_555 M O1A ATP . G ATP 5301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale3 G NZ LYS 4214 B LYS 4214 1_555 Q O1A ATP . B ATP 5301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale4 H NZ LYS 4214 I LYS 4214 1_555 U O1A ATP . I ATP 5301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? metalc ? metalc1 B OE2 GLU 3893 A GLU 3893 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc2 B OE2 GLU 3967 A GLU 3967 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc3 B SG CYS 4958 A CYS 4958 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc4 B SG CYS 4961 A CYS 4961 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc5 B NE2 HIS 4978 A HIS 4978 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc6 B ND1 HIS 4983 A HIS 4983 1_555 K ZN ZN . A ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc7 B O THR 5001 A THR 5001 1_555 J CA CA . A CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc8 F OE2 GLU 3893 G GLU 3893 1_555 N CA CA . G CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc9 F OE2 GLU 3967 G GLU 3967 1_555 N CA CA . G CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc10 F SG CYS 4958 G CYS 4958 1_555 O ZN ZN . G ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc11 F SG CYS 4961 G CYS 4961 1_555 O ZN ZN . G ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc12 F NE2 HIS 4978 G HIS 4978 1_555 O ZN ZN . G ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc13 F ND1 HIS 4983 G HIS 4983 1_555 O ZN ZN . G ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc14 F O THR 5001 G THR 5001 1_555 N CA CA . G CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc15 G OE2 GLU 3893 B GLU 3893 1_555 R CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc16 G OE2 GLU 3967 B GLU 3967 1_555 R CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc17 G SG CYS 4958 B CYS 4958 1_555 S ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc18 G SG CYS 4961 B CYS 4961 1_555 S ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc19 G NE2 HIS 4978 B HIS 4978 1_555 S ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc20 G ND1 HIS 4983 B HIS 4983 1_555 S ZN ZN . B ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc21 G O THR 5001 B THR 5001 1_555 R CA CA . B CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc22 H OE2 GLU 3893 I GLU 3893 1_555 V CA CA . I CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc23 H OE2 GLU 3967 I GLU 3967 1_555 V CA CA . I CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc24 H SG CYS 4958 I CYS 4958 1_555 W ZN ZN . I ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc25 H SG CYS 4961 I CYS 4961 1_555 W ZN ZN . I ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc26 H NE2 HIS 4978 I HIS 4978 1_555 W ZN ZN . I ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc27 H ND1 HIS 4983 I HIS 4983 1_555 W ZN ZN . I ZN 5303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc28 H O THR 5001 I THR 5001 1_555 V CA CA . I CA 5302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? # _chem_comp.formula 'C8 H10 N4 O2' _chem_comp.formula_weight 194.191 _chem_comp.id CFF _chem_comp.mon_nstd_flag . _chem_comp.name CAFFEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3,7-DIHYDRO-1,3,7-TRIMETHYL-1H-PURINE-2,6-DIONE # _atom_sites.entry_id 7M6A _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP A 1 5301 5301 ATP ATP . J 4 CA A 1 5302 5501 CA CA . K 5 ZN A 1 5303 5601 ZN ZN . L 6 CFF A 1 5304 7501 CFF CFF . M 3 ATP G 1 5301 5301 ATP ATP . N 4 CA G 1 5302 5501 CA CA . O 5 ZN G 1 5303 5601 ZN ZN . P 6 CFF G 1 5304 7501 CFF CFF . Q 3 ATP B 1 5301 5301 ATP ATP . R 4 CA B 1 5302 5501 CA CA . S 5 ZN B 1 5303 5601 ZN ZN . T 6 CFF B 1 5304 7501 CFF CFF . U 3 ATP I 1 5301 5301 ATP ATP . V 4 CA I 1 5302 5501 CA CA . W 5 ZN I 1 5303 5601 ZN ZN . X 6 CFF I 1 5304 7501 CFF CFF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CFF . . . X 6 191.551 248.895 187.599 1 118.76 ? N1 CFF 5304 I 1 HETATM 2 C C2 CFF . . . X 6 191.594 247.846 186.653 1 118.76 ? C2 CFF 5304 I 1 HETATM 3 C C10 CFF . . . X 6 190.473 249.879 187.538 1 118.76 ? C10 CFF 5304 I 1 HETATM 4 C C6 CFF . . . X 6 192.529 249.007 188.597 1 118.76 ? C6 CFF 5304 I 1 HETATM 5 N N3 CFF . . . X 6 192.605 246.868 186.657 1 118.76 ? N3 CFF 5304 I 1 HETATM 6 O O11 CFF . . . X 6 190.709 247.779 185.783 1 118.76 ? O11 CFF 5304 I 1 HETATM 7 C C12 CFF . . . X 6 192.61 245.802 185.66 1 118.76 ? C12 CFF 5304 I 1 HETATM 8 C C4 CFF . . . X 6 193.547 246.928 187.582 1 118.76 ? C4 CFF 5304 I 1 HETATM 9 C C5 CFF . . . X 6 193.581 247.971 188.591 1 118.76 ? C5 CFF 5304 I 1 HETATM 10 N N9 CFF . . . X 6 194.598 246.127 187.79 1 118.76 ? N9 CFF 5304 I 1 HETATM 11 O O13 CFF . . . X 6 192.478 249.936 189.423 1 118.76 ? O13 CFF 5304 I 1 HETATM 12 N N7 CFF . . . X 6 194.652 247.745 189.353 1 118.76 ? N7 CFF 5304 I 1 HETATM 13 C C8 CFF . . . X 6 195.253 246.639 188.867 1 118.76 ? C8 CFF 5304 I 1 HETATM 14 C C14 CFF . . . X 6 195.134 248.528 190.517 1 118.76 ? C14 CFF 5304 I 1 # _model_server_stats.io_time_ms 220 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 625 _model_server_stats.query_time_ms 444 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #