data_7M6J
#
_model_server_result.job_id            NtNnpposVBoG3YP2uWoooQ 
_model_server_result.datetime_utc      '2024-11-14 21:14:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7m6j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":502}' 
#
_entry.id    7M6J 
#
_exptl.entry_id    7M6J 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7M6J 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7M6J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 78 A CYS 111 1_555 A SG CYS 81 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 F SG CYS 78 F CYS 111 1_555 F SG CYS 81 F CYS 114 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc1 E OG SER 56 E SER 56 1_555 K MG MG . E MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc2 K MG MG . E MG 501 1_555 L O1G GTP . E GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc3 K MG MG . E MG 501 1_555 L O3G GTP . E GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc4 K MG MG . E MG 501 1_555 L O1B GTP . E GTP 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 174 n n 
PG O2G GTP sing 175 n n 
PG O3G GTP sing 176 n n 
PG O3B GTP sing 177 n n 
O2G HOG2 GTP sing 178 n n 
O3G HOG3 GTP sing 179 n n 
O3B PB GTP sing 180 n n 
PB O1B GTP doub 181 n n 
PB O2B GTP sing 182 n n 
PB O3A GTP sing 183 n n 
O2B HOB2 GTP sing 184 n n 
O3A PA GTP sing 185 n n 
PA O1A GTP doub 186 n n 
PA O2A GTP sing 187 n n 
PA O5' GTP sing 188 n n 
O2A HOA2 GTP sing 189 n n 
O5' C5' GTP sing 190 n n 
C5' C4' GTP sing 191 n n 
C5' H5' GTP sing 192 n n 
C5' "H5''" GTP sing 193 n n 
C4' O4' GTP sing 194 n n 
C4' C3' GTP sing 195 n n 
C4' H4' GTP sing 196 n n 
O4' C1' GTP sing 197 n n 
C3' O3' GTP sing 198 n n 
C3' C2' GTP sing 199 n n 
C3' H3' GTP sing 200 n n 
O3' HO3' GTP sing 201 n n 
C2' O2' GTP sing 202 n n 
C2' C1' GTP sing 203 n n 
C2' H2' GTP sing 204 n n 
O2' HO2' GTP sing 205 n n 
C1' N9 GTP sing 206 n n 
C1' H1' GTP sing 207 n n 
N9 C8 GTP sing 208 n y 
N9 C4 GTP sing 209 n y 
C8 N7 GTP doub 210 n y 
C8 H8 GTP sing 211 n n 
N7 C5 GTP sing 212 n y 
C5 C6 GTP sing 213 n n 
C5 C4 GTP doub 214 n y 
C6 O6 GTP doub 215 n n 
C6 N1 GTP sing 216 n n 
N1 C2 GTP sing 217 n n 
N1 HN1 GTP sing 218 n n 
C2 N2 GTP sing 219 n n 
C2 N3 GTP doub 220 n n 
N2 HN21 GTP sing 221 n n 
N2 HN22 GTP sing 222 n n 
N3 C4 GTP sing 223 n n 
#
_atom_sites.entry_id                     7M6J 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 GDP A 1 401 401 GDP GDP . 
H 5 GTP B 1 501 431 GTP GTP . 
I 4 GDP C 1 501 448 GDP GDP . 
J 4 GDP D 1 501 449 GDP GDP . 
K 6 MG E 1 501 501 MG MG . 
L 5 GTP E 1 502 500 GTP GTP . 
M 4 GDP F 1 401 401 GDP GDP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . L 5 203.969 213.091 278.529 1 71.44 ? PG GTP 502 E 1 
HETATM 2 O O1G GTP . . . L 5 204.455 213.103 277.101 1 71.44 ? O1G GTP 502 E 1 
HETATM 3 O O2G GTP . . . L 5 204.147 211.702 279.09 1 71.44 ? O2G GTP 502 E 1 
HETATM 4 O O3G GTP . . . L 5 202.516 213.493 278.569 1 71.44 ? O3G GTP 502 E 1 
HETATM 5 O O3B GTP . . . L 5 204.838 214.144 279.378 1 71.44 ? O3B GTP 502 E 1 
HETATM 6 P PB GTP . . . L 5 204.897 215.661 278.869 1 71.44 ? PB GTP 502 E 1 
HETATM 7 O O1B GTP . . . L 5 204.063 215.796 277.625 1 71.44 ? O1B GTP 502 E 1 
HETATM 8 O O2B GTP . . . L 5 206.32 216.093 278.639 1 71.44 ? O2B GTP 502 E 1 
HETATM 9 O O3A GTP . . . L 5 204.231 216.574 279.998 1 71.44 ? O3A GTP 502 E 1 
HETATM 10 P PA GTP . . . L 5 203.987 218.099 279.575 1 71.44 ? PA GTP 502 E 1 
HETATM 11 O O1A GTP . . . L 5 202.66 218.2 278.872 1 71.44 ? O1A GTP 502 E 1 
HETATM 12 O O2A GTP . . . L 5 205.094 218.592 278.683 1 71.44 ? O2A GTP 502 E 1 
HETATM 13 O O5' GTP . . . L 5 203.932 218.923 280.948 1 71.44 ? O5' GTP 502 E 1 
HETATM 14 C C5' GTP . . . L 5 204.878 218.682 281.962 1 71.44 ? C5' GTP 502 E 1 
HETATM 15 C C4' GTP . . . L 5 204.704 219.736 283.041 1 71.44 ? C4' GTP 502 E 1 
HETATM 16 O O4' GTP . . . L 5 205.928 220.419 283.178 1 71.44 ? O4' GTP 502 E 1 
HETATM 17 C C3' GTP . . . L 5 203.664 220.743 282.603 1 71.44 ? C3' GTP 502 E 1 
HETATM 18 O O3' GTP . . . L 5 202.572 220.717 283.487 1 71.44 ? O3' GTP 502 E 1 
HETATM 19 C C2' GTP . . . L 5 204.335 222.092 282.672 1 71.44 ? C2' GTP 502 E 1 
HETATM 20 O O2' GTP . . . L 5 203.712 222.862 283.668 1 71.44 ? O2' GTP 502 E 1 
HETATM 21 C C1' GTP . . . L 5 205.772 221.815 283.061 1 71.44 ? C1' GTP 502 E 1 
HETATM 22 N N9 GTP . . . L 5 206.696 222.278 282.017 1 71.44 ? N9 GTP 502 E 1 
HETATM 23 C C8 GTP . . . L 5 206.391 222.582 280.72 1 71.44 ? C8 GTP 502 E 1 
HETATM 24 N N7 GTP . . . L 5 207.527 222.963 280.094 1 71.44 ? N7 GTP 502 E 1 
HETATM 25 C C5 GTP . . . L 5 208.547 222.908 280.974 1 71.44 ? C5 GTP 502 E 1 
HETATM 26 C C6 GTP . . . L 5 209.901 223.188 280.864 1 71.44 ? C6 GTP 502 E 1 
HETATM 27 O O6 GTP . . . L 5 210.372 223.569 279.797 1 71.44 ? O6 GTP 502 E 1 
HETATM 28 N N1 GTP . . . L 5 210.722 223.037 281.958 1 71.44 ? N1 GTP 502 E 1 
HETATM 29 C C2 GTP . . . L 5 210.191 222.604 283.15 1 71.44 ? C2 GTP 502 E 1 
HETATM 30 N N2 GTP . . . L 5 210.971 222.457 284.214 1 71.44 ? N2 GTP 502 E 1 
HETATM 31 N N3 GTP . . . L 5 208.847 222.33 283.253 1 71.44 ? N3 GTP 502 E 1 
HETATM 32 C C4 GTP . . . L 5 208.037 222.479 282.183 1 71.44 ? C4 GTP 502 E 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           634 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           32 
#