data_7M74 # _model_server_result.job_id GZzhB5wZxCfmcuQjk7G0mQ _model_server_result.datetime_utc '2024-10-19 03:52:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":401}' # _entry.id 7M74 # _exptl.entry_id 7M74 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M74 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 8 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 8 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 8 n H GLC 1 D 1 GLC M 601 MAL 8 n H GLC 2 D 2 GLC M 601 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 21 L CYS 24 1_555 E SG CYS 86 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 E SG CYS 132 L CYS 135 1_555 E SG CYS 192 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 F SG CYS 22 H CYS 25 1_555 F SG CYS 96 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 F SG CYS 153 H CYS 156 1_555 F SG CYS 209 H CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 G SG CYS 22 N CYS 31 1_555 G SG CYS 96 N CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A N VAL 1 A VAL 13 1_555 D C PHE 373 M PHE 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 H O4 GLC . D GLC 1 1_555 H C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7M74 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 TAK A 1 601 100 TAK TAK . J 10 ATP G 1 401 402 ATP ATP . K 11 ADP G 1 402 403 ADP ADP . L 12 AMP G 1 403 404 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . J 10 103.502 112.379 160.919 1 165.36 ? PG ATP 401 G 1 HETATM 2 O O1G ATP . . . J 10 102.068 112.73 160.599 1 165.36 ? O1G ATP 401 G 1 HETATM 3 O O2G ATP . . . J 10 103.945 111.042 160.375 1 165.36 ? O2G ATP 401 G 1 HETATM 4 O O3G ATP . . . J 10 103.902 112.626 162.354 1 165.36 ? O3G ATP 401 G 1 HETATM 5 P PB ATP . . . J 10 104.067 115.024 160.145 1 165.36 ? PB ATP 401 G 1 HETATM 6 O O1B ATP . . . J 10 102.816 115.287 159.342 1 165.36 ? O1B ATP 401 G 1 HETATM 7 O O2B ATP . . . J 10 104.139 115.461 161.588 1 165.36 ? O2B ATP 401 G 1 HETATM 8 O O3B ATP . . . J 10 104.372 113.443 160.077 1 165.36 ? O3B ATP 401 G 1 HETATM 9 P PA ATP . . . J 10 105.598 117.236 159.281 1 165.36 ? PA ATP 401 G 1 HETATM 10 O O1A ATP . . . J 10 105.814 117.769 160.672 1 165.36 ? O1A ATP 401 G 1 HETATM 11 O O2A ATP . . . J 10 106.639 117.504 158.222 1 165.36 ? O2A ATP 401 G 1 HETATM 12 O O3A ATP . . . J 10 105.337 115.647 159.371 1 165.36 ? O3A ATP 401 G 1 HETATM 13 O O5' ATP . . . J 10 104.216 117.851 158.734 1 165.36 ? O5' ATP 401 G 1 HETATM 14 C C5' ATP . . . J 10 103.85 117.707 157.364 1 165.36 ? C5' ATP 401 G 1 HETATM 15 C C4' ATP . . . J 10 103.628 119.094 156.778 1 165.36 ? C4' ATP 401 G 1 HETATM 16 O O4' ATP . . . J 10 103.214 119.997 157.807 1 165.36 ? O4' ATP 401 G 1 HETATM 17 C C3' ATP . . . J 10 104.92 119.643 156.195 1 165.36 ? C3' ATP 401 G 1 HETATM 18 O O3' ATP . . . J 10 104.796 119.784 154.777 1 165.36 ? O3' ATP 401 G 1 HETATM 19 C C2' ATP . . . J 10 105.124 121.001 156.835 1 165.36 ? C2' ATP 401 G 1 HETATM 20 O O2' ATP . . . J 10 105.286 122.007 155.833 1 165.36 ? O2' ATP 401 G 1 HETATM 21 C C1' ATP . . . J 10 103.866 121.259 157.646 1 165.36 ? C1' ATP 401 G 1 HETATM 22 N N9 ATP . . . J 10 104.233 121.844 158.96 1 165.36 ? N9 ATP 401 G 1 HETATM 23 C C8 ATP . . . J 10 104.723 121.171 160.018 1 165.36 ? C8 ATP 401 G 1 HETATM 24 N N7 ATP . . . J 10 104.958 122.006 161.062 1 165.36 ? N7 ATP 401 G 1 HETATM 25 C C5 ATP . . . J 10 104.615 123.248 160.672 1 165.36 ? C5 ATP 401 G 1 HETATM 26 C C6 ATP . . . J 10 104.61 124.599 161.281 1 165.36 ? C6 ATP 401 G 1 HETATM 27 N N6 ATP . . . J 10 105.031 124.797 162.553 1 165.36 ? N6 ATP 401 G 1 HETATM 28 N N1 ATP . . . J 10 104.173 125.63 160.524 1 165.36 ? N1 ATP 401 G 1 HETATM 29 C C2 ATP . . . J 10 103.752 125.451 159.258 1 165.36 ? C2 ATP 401 G 1 HETATM 30 N N3 ATP . . . J 10 103.729 124.255 158.643 1 165.36 ? N3 ATP 401 G 1 HETATM 31 C C4 ATP . . . J 10 104.141 123.135 159.284 1 165.36 ? C4 ATP 401 G 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #