data_7M74 # _model_server_result.job_id gmxhkUffgtZH7AB4zw_DWg _model_server_result.datetime_utc '2024-10-19 03:39:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":402}' # _entry.id 7M74 # _exptl.entry_id 7M74 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M74 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 11 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 8 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 8 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 8 n H GLC 1 D 1 GLC M 601 MAL 8 n H GLC 2 D 2 GLC M 601 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 21 L CYS 24 1_555 E SG CYS 86 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 E SG CYS 132 L CYS 135 1_555 E SG CYS 192 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 F SG CYS 22 H CYS 25 1_555 F SG CYS 96 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 F SG CYS 153 H CYS 156 1_555 F SG CYS 209 H CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 G SG CYS 22 N CYS 31 1_555 G SG CYS 96 N CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A N VAL 1 A VAL 13 1_555 D C PHE 373 M PHE 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 H O4 GLC . D GLC 1 1_555 H C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7M74 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 TAK A 1 601 100 TAK TAK . J 10 ATP G 1 401 402 ATP ATP . K 11 ADP G 1 402 403 ADP ADP . L 12 AMP G 1 403 404 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . K 11 111.821 109.632 161.114 1 169.27 ? PB ADP 402 G 1 HETATM 2 O O1B ADP . . . K 11 112.654 110.388 160.107 1 169.27 ? O1B ADP 402 G 1 HETATM 3 O O2B ADP . . . K 11 111.464 110.431 162.345 1 169.27 ? O2B ADP 402 G 1 HETATM 4 O O3B ADP . . . K 11 110.669 108.86 160.516 1 169.27 ? O3B ADP 402 G 1 HETATM 5 P PA ADP . . . K 11 113.994 108.846 162.699 1 169.27 ? PA ADP 402 G 1 HETATM 6 O O1A ADP . . . K 11 114.674 110.107 162.223 1 169.27 ? O1A ADP 402 G 1 HETATM 7 O O2A ADP . . . K 11 113.449 108.788 164.106 1 169.27 ? O2A ADP 402 G 1 HETATM 8 O O3A ADP . . . K 11 112.812 108.489 161.665 1 169.27 ? O3A ADP 402 G 1 HETATM 9 O O5' ADP . . . K 11 115.024 107.627 162.489 1 169.27 ? O5' ADP 402 G 1 HETATM 10 C C5' ADP . . . K 11 116.401 107.778 162.825 1 169.27 ? C5' ADP 402 G 1 HETATM 11 C C4' ADP . . . K 11 117.1 106.433 162.68 1 169.27 ? C4' ADP 402 G 1 HETATM 12 O O4' ADP . . . K 11 116.708 105.569 163.747 1 169.27 ? O4' ADP 402 G 1 HETATM 13 C C3' ADP . . . K 11 116.731 105.741 161.376 1 169.27 ? C3' ADP 402 G 1 HETATM 14 O O3' ADP . . . K 11 117.857 105.716 160.496 1 169.27 ? O3' ADP 402 G 1 HETATM 15 C C2' ADP . . . K 11 116.332 104.328 161.753 1 169.27 ? C2' ADP 402 G 1 HETATM 16 O O2' ADP . . . K 11 117.201 103.385 161.12 1 169.27 ? O2' ADP 402 G 1 HETATM 17 C C1' ADP . . . K 11 116.479 104.245 163.264 1 169.27 ? C1' ADP 402 G 1 HETATM 18 N N9 ADP . . . K 11 115.235 103.702 163.862 1 169.27 ? N9 ADP 402 G 1 HETATM 19 C C8 ADP . . . K 11 114.008 104.242 163.743 1 169.27 ? C8 ADP 402 G 1 HETATM 20 N N7 ADP . . . K 11 113.083 103.502 164.405 1 169.27 ? N7 ADP 402 G 1 HETATM 21 C C5 ADP . . . K 11 113.725 102.461 164.965 1 169.27 ? C5 ADP 402 G 1 HETATM 22 C C6 ADP . . . K 11 113.348 101.298 165.801 1 169.27 ? C6 ADP 402 G 1 HETATM 23 N N6 ADP . . . K 11 112.065 101.095 166.182 1 169.27 ? N6 ADP 402 G 1 HETATM 24 N N1 ADP . . . K 11 114.329 100.446 166.171 1 169.27 ? N1 ADP 402 G 1 HETATM 25 C C2 ADP . . . K 11 115.61 100.632 165.801 1 169.27 ? C2 ADP 402 G 1 HETATM 26 N N3 ADP . . . K 11 116.022 101.664 165.045 1 169.27 ? N3 ADP 402 G 1 HETATM 27 C C4 ADP . . . K 11 115.143 102.595 164.601 1 169.27 ? C4 ADP 402 G 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #