data_7M74 # _model_server_result.job_id PIMKVeG9IhbsHhmZCMFqdA _model_server_result.datetime_utc '2024-10-19 04:00:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":403}' # _entry.id 7M74 # _exptl.entry_id 7M74 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 347.221 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M74 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 8 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 8 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 8 n H GLC 1 D 1 GLC M 601 MAL 8 n H GLC 2 D 2 GLC M 601 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 21 L CYS 24 1_555 E SG CYS 86 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 E SG CYS 132 L CYS 135 1_555 E SG CYS 192 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 F SG CYS 22 H CYS 25 1_555 F SG CYS 96 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 F SG CYS 153 H CYS 156 1_555 F SG CYS 209 H CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 G SG CYS 22 N CYS 31 1_555 G SG CYS 96 N CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A N VAL 1 A VAL 13 1_555 D C PHE 373 M PHE 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 H O4 GLC . D GLC 1 1_555 H C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7M74 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 TAK A 1 601 100 TAK TAK . J 10 ATP G 1 401 402 ATP ATP . K 11 ADP G 1 402 403 ADP ADP . L 12 AMP G 1 403 404 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . L 12 112.55 116.416 166.82 1 180.91 ? P AMP 403 G 1 HETATM 2 O O1P AMP . . . L 12 113.771 116.002 166.035 1 180.91 ? O1P AMP 403 G 1 HETATM 3 O O2P AMP . . . L 12 111.568 117.265 166.049 1 180.91 ? O2P AMP 403 G 1 HETATM 4 O O3P AMP . . . L 12 111.914 115.304 167.62 1 180.91 ? O3P AMP 403 G 1 HETATM 5 O O5' AMP . . . L 12 113.121 117.405 167.93 1 180.91 ? O5' AMP 403 G 1 HETATM 6 C C5' AMP . . . L 12 114.055 116.95 168.904 1 180.91 ? C5' AMP 403 G 1 HETATM 7 C C4' AMP . . . L 12 114.93 118.068 169.421 1 180.91 ? C4' AMP 403 G 1 HETATM 8 O O4' AMP . . . L 12 115.657 118.664 168.313 1 180.91 ? O4' AMP 403 G 1 HETATM 9 C C3' AMP . . . L 12 114.193 119.211 170.123 1 180.91 ? C3' AMP 403 G 1 HETATM 10 O O3' AMP . . . L 12 114.945 119.633 171.26 1 180.91 ? O3' AMP 403 G 1 HETATM 11 C C2' AMP . . . L 12 114.188 120.323 169.074 1 180.91 ? C2' AMP 403 G 1 HETATM 12 O O2' AMP . . . L 12 114.129 121.63 169.603 1 180.91 ? O2' AMP 403 G 1 HETATM 13 C C1' AMP . . . L 12 115.5 120.067 168.342 1 180.91 ? C1' AMP 403 G 1 HETATM 14 N N9 AMP . . . L 12 115.52 120.557 166.962 1 180.91 ? N9 AMP 403 G 1 HETATM 15 C C8 AMP . . . L 12 114.875 120.001 165.92 1 180.91 ? C8 AMP 403 G 1 HETATM 16 N N7 AMP . . . L 12 115.097 120.699 164.777 1 180.91 ? N7 AMP 403 G 1 HETATM 17 C C5 AMP . . . L 12 115.901 121.733 165.086 1 180.91 ? C5 AMP 403 G 1 HETATM 18 C C6 AMP . . . L 12 116.526 122.858 164.351 1 180.91 ? C6 AMP 403 G 1 HETATM 19 N N6 AMP . . . L 12 116.326 123.021 163.021 1 180.91 ? N6 AMP 403 G 1 HETATM 20 N N1 AMP . . . L 12 117.301 123.716 165.052 1 180.91 ? N1 AMP 403 G 1 HETATM 21 C C2 AMP . . . L 12 117.509 123.564 166.373 1 180.91 ? C2 AMP 403 G 1 HETATM 22 N N3 AMP . . . L 12 116.976 122.567 167.102 1 180.91 ? N3 AMP 403 G 1 HETATM 23 C C4 AMP . . . L 12 116.177 121.635 166.527 1 180.91 ? C4 AMP 403 G 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 492 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #