data_7M74 # _model_server_result.job_id wxe9ftJvwqDREG7PUXN9rw _model_server_result.datetime_utc '2024-10-19 03:55:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 7M74 # _exptl.entry_id 7M74 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 399.488 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[4-(2-piperidin-1-ylethoxy)phenyl]-3-pyridin-4-ylpyrazolo[1,5-a]pyrimidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7M74 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 8 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 8 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 8 n H GLC 1 D 1 GLC M 601 MAL 8 n H GLC 2 D 2 GLC M 601 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 21 L CYS 24 1_555 E SG CYS 86 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 E SG CYS 132 L CYS 135 1_555 E SG CYS 192 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 F SG CYS 22 H CYS 25 1_555 F SG CYS 96 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 F SG CYS 153 H CYS 156 1_555 F SG CYS 209 H CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 G SG CYS 22 N CYS 31 1_555 G SG CYS 96 N CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A N VAL 1 A VAL 13 1_555 D C PHE 373 M PHE 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 H O4 GLC . D GLC 1 1_555 H C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C24 H25 N5 O' _chem_comp.formula_weight 399.488 _chem_comp.id TAK _chem_comp.mon_nstd_flag . _chem_comp.name 6-[4-(2-piperidin-1-ylethoxy)phenyl]-3-pyridin-4-ylpyrazolo[1,5-a]pyrimidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Dorsomorphin # _atom_sites.entry_id 7M74 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 TAK A 1 601 100 TAK TAK . J 10 ATP G 1 401 402 ATP ATP . K 11 ADP G 1 402 403 ADP ADP . L 12 AMP G 1 403 404 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TAK . . . I 9 148.052 110.878 138.679 1 116.6 ? C1 TAK 601 A 1 HETATM 2 C C2 TAK . . . I 9 149.152 109.876 139.041 1 116.6 ? C2 TAK 601 A 1 HETATM 3 C C3 TAK . . . I 9 148.811 108.463 138.559 1 116.6 ? C3 TAK 601 A 1 HETATM 4 C C4 TAK . . . I 9 148.449 108.453 137.07 1 116.6 ? C4 TAK 601 A 1 HETATM 5 C C5 TAK . . . I 9 147.36 109.482 136.748 1 116.6 ? C5 TAK 601 A 1 HETATM 6 N N1 TAK . . . I 9 147.684 110.826 137.255 1 116.6 ? N1 TAK 601 A 1 HETATM 7 C C6 TAK . . . I 9 148.686 111.495 136.412 1 116.6 ? C6 TAK 601 A 1 HETATM 8 C C7 TAK . . . I 9 148.048 111.895 135.08 1 116.6 ? C7 TAK 601 A 1 HETATM 9 O O1 TAK . . . I 9 147.184 113.015 135.284 1 116.6 ? O1 TAK 601 A 1 HETATM 10 C C8 TAK . . . I 9 146.09 113.109 134.484 1 116.6 ? C8 TAK 601 A 1 HETATM 11 C C9 TAK . . . I 9 144.918 112.45 134.835 1 116.6 ? C9 TAK 601 A 1 HETATM 12 C C10 TAK . . . I 9 143.805 112.544 134.024 1 116.6 ? C10 TAK 601 A 1 HETATM 13 C C11 TAK . . . I 9 146.148 113.864 133.319 1 116.6 ? C11 TAK 601 A 1 HETATM 14 C C12 TAK . . . I 9 145.039 113.962 132.504 1 116.6 ? C12 TAK 601 A 1 HETATM 15 C C13 TAK . . . I 9 143.86 113.301 132.854 1 116.6 ? C13 TAK 601 A 1 HETATM 16 C C14 TAK . . . I 9 142.663 113.401 131.983 1 116.6 ? C14 TAK 601 A 1 HETATM 17 C C15 TAK . . . I 9 141.443 112.997 132.446 1 116.6 ? C15 TAK 601 A 1 HETATM 18 C C16 TAK . . . I 9 142.764 113.909 130.671 1 116.6 ? C16 TAK 601 A 1 HETATM 19 N N2 TAK . . . I 9 141.695 113.991 129.914 1 116.6 ? N2 TAK 601 A 1 HETATM 20 C C17 TAK . . . I 9 140.495 113.597 130.36 1 116.6 ? C17 TAK 601 A 1 HETATM 21 N N3 TAK . . . I 9 140.355 113.097 131.628 1 116.6 ? N3 TAK 601 A 1 HETATM 22 N N4 TAK . . . I 9 139.009 112.771 131.821 1 116.6 ? N4 TAK 601 A 1 HETATM 23 C C18 TAK . . . I 9 138.339 113.05 130.731 1 116.6 ? C18 TAK 601 A 1 HETATM 24 C C19 TAK . . . I 9 139.217 113.578 129.777 1 116.6 ? C19 TAK 601 A 1 HETATM 25 C C20 TAK . . . I 9 138.84 114.01 128.41 1 116.6 ? C20 TAK 601 A 1 HETATM 26 C C21 TAK . . . I 9 137.594 114.613 128.177 1 116.6 ? C21 TAK 601 A 1 HETATM 27 C C22 TAK . . . I 9 137.272 114.999 126.89 1 116.6 ? C22 TAK 601 A 1 HETATM 28 N N5 TAK . . . I 9 138.119 114.799 125.894 1 116.6 ? N5 TAK 601 A 1 HETATM 29 C C23 TAK . . . I 9 139.301 114.23 126.067 1 116.6 ? C23 TAK 601 A 1 HETATM 30 C C24 TAK . . . I 9 139.703 113.814 127.32 1 116.6 ? C24 TAK 601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #