data_7M7W
#
_model_server_result.job_id            Y3kCpzrxcz4POwxv_kuqUQ 
_model_server_result.datetime_utc      '2024-10-12 12:25:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7m7w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":601}' 
#
_entry.id    7M7W 
#
_exptl.entry_id    7M7W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.34 
_cell.angle_gamma         90 
_cell.entry_id            7M7W 
_cell.length_a            86.185 
_cell.length_b            66.402 
_cell.length_c            237.659 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7M7W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? pentameric 5 author_defined_assembly 1 
? pentameric 5 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,K,M,N,O,P,T 1 1 
E,F,G,H,J,L,Q,R,S,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 B CYS 22 1_555 A SG CYS 90 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 A SG CYS 141 B CYS 141 1_555 A SG CYS 200 B CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf3 B SG CYS 22 A CYS 22 1_555 B SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf4 B SG CYS 153 A CYS 153 1_555 B SG CYS 209 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf5 C SG CYS 22 D CYS 22 1_555 C SG CYS 90 D CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 C SG CYS 140 D CYS 140 1_555 C SG CYS 199 D CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf7 D SG CYS 22 C CYS 22 1_555 D SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf8 D SG CYS 147 C CYS 147 1_555 D SG CYS 203 C CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf9 E SG CYS 22 L CYS 22 1_555 E SG CYS 90 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf10 E SG CYS 141 L CYS 141 1_555 E SG CYS 200 L CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf11 F SG CYS 22 H CYS 22 1_555 F SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf12 F SG CYS 153 H CYS 153 1_555 F SG CYS 209 H CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf13 G SG CYS 22 F CYS 22 1_555 G SG CYS 90 F CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf14 G SG CYS 140 F CYS 140 1_555 G SG CYS 199 F CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
disulf ? disulf15 H SG CYS 22 E CYS 22 1_555 H SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf16 H SG CYS 147 E CYS 147 1_555 H SG CYS 203 E CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf17 I SG CYS 13 S CYS 336 1_555 I SG CYS 38 S CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf18 I SG CYS 56 S CYS 379 1_555 I SG CYS 109 S CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf19 I SG CYS 68 S CYS 391 1_555 I SG CYS 202 S CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf20 I SG CYS 157 S CYS 480 1_555 I SG CYS 165 S CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
disulf ? disulf21 J SG CYS 13 R CYS 336 1_555 J SG CYS 38 R CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf22 J SG CYS 56 R CYS 379 1_555 J SG CYS 109 R CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf23 J SG CYS 68 R CYS 391 1_555 J SG CYS 202 R CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf24 J SG CYS 157 R CYS 480 1_555 J SG CYS 165 R CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
covale ? covale1 I ND2 ASN 20 S ASN 343 1_555 K C1 NAG . S NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale2 J ND2 ASN 20 R ASN 343 1_555 L C1 NAG . R NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7M7W 
_atom_sites.fract_transf_matrix[1][1]    0.011603 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000881 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01506 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00422 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 6 NAG S 1 601 601 NAG NAG . 
L 6 NAG R 1 601 601 NAG NAG . 
M 7 HOH B 1 301 1007 HOH HOH . 
M 7 HOH B 2 302 1006 HOH HOH . 
M 7 HOH B 3 303 23 HOH HOH . 
M 7 HOH B 4 304 1008 HOH HOH . 
M 7 HOH B 5 305 1010 HOH HOH . 
M 7 HOH B 6 306 1001 HOH HOH . 
M 7 HOH B 7 307 13 HOH HOH . 
M 7 HOH B 8 308 1003 HOH HOH . 
M 7 HOH B 9 309 1002 HOH HOH . 
M 7 HOH B 10 310 1000 HOH HOH . 
M 7 HOH B 11 311 5 HOH HOH . 
M 7 HOH B 12 312 24 HOH HOH . 
M 7 HOH B 13 313 25 HOH HOH . 
N 7 HOH A 1 301 3 HOH HOH . 
N 7 HOH A 2 302 17 HOH HOH . 
N 7 HOH A 3 303 9 HOH HOH . 
N 7 HOH A 4 304 1001 HOH HOH . 
N 7 HOH A 5 305 14 HOH HOH . 
N 7 HOH A 6 306 1002 HOH HOH . 
N 7 HOH A 7 307 8 HOH HOH . 
N 7 HOH A 8 308 1 HOH HOH . 
N 7 HOH A 9 309 26 HOH HOH . 
N 7 HOH A 10 310 27 HOH HOH . 
O 7 HOH D 1 1001 1001 HOH HOH . 
O 7 HOH D 2 1002 1008 HOH HOH . 
O 7 HOH D 3 1003 1002 HOH HOH . 
O 7 HOH D 4 1004 1012 HOH HOH . 
O 7 HOH D 5 1005 1000 HOH HOH . 
O 7 HOH D 6 1006 1006 HOH HOH . 
O 7 HOH D 7 1007 1009 HOH HOH . 
O 7 HOH D 8 1008 1005 HOH HOH . 
O 7 HOH D 9 1009 1004 HOH HOH . 
O 7 HOH D 10 1010 1009 HOH HOH . 
O 7 HOH D 11 1011 1007 HOH HOH . 
O 7 HOH D 12 1012 1013 HOH HOH . 
O 7 HOH D 13 1013 4 HOH HOH . 
P 7 HOH C 1 301 1006 HOH HOH . 
P 7 HOH C 2 302 1010 HOH HOH . 
P 7 HOH C 3 303 1012 HOH HOH . 
P 7 HOH C 4 304 1008 HOH HOH . 
P 7 HOH C 5 305 1004 HOH HOH . 
P 7 HOH C 6 306 1007 HOH HOH . 
P 7 HOH C 7 307 30 HOH HOH . 
P 7 HOH C 8 308 1001 HOH HOH . 
P 7 HOH C 9 309 1000 HOH HOH . 
P 7 HOH C 10 310 31 HOH HOH . 
Q 7 HOH L 1 1001 1001 HOH HOH . 
Q 7 HOH L 2 1002 1002 HOH HOH . 
Q 7 HOH L 3 1003 1003 HOH HOH . 
R 7 HOH F 1 301 1008 HOH HOH . 
R 7 HOH F 2 302 1006 HOH HOH . 
R 7 HOH F 3 303 1001 HOH HOH . 
R 7 HOH F 4 304 1009 HOH HOH . 
R 7 HOH F 5 305 1000 HOH HOH . 
R 7 HOH F 6 306 1002 HOH HOH . 
R 7 HOH F 7 307 15 HOH HOH . 
R 7 HOH F 8 308 11 HOH HOH . 
R 7 HOH F 9 309 1003 HOH HOH . 
R 7 HOH F 10 310 1004 HOH HOH . 
S 7 HOH E 1 301 1005 HOH HOH . 
S 7 HOH E 2 302 1002 HOH HOH . 
S 7 HOH E 3 303 1003 HOH HOH . 
S 7 HOH E 4 304 7 HOH HOH . 
S 7 HOH E 5 305 10 HOH HOH . 
S 7 HOH E 6 306 603 HOH HOH . 
S 7 HOH E 7 307 16 HOH HOH . 
T 7 HOH S 1 701 2 HOH HOH . 
T 7 HOH S 2 702 615 HOH HOH . 
T 7 HOH S 3 703 612 HOH HOH . 
T 7 HOH S 4 704 1000 HOH HOH . 
T 7 HOH S 5 705 1005 HOH HOH . 
T 7 HOH S 6 706 611 HOH HOH . 
T 7 HOH S 7 707 605 HOH HOH . 
T 7 HOH S 8 708 606 HOH HOH . 
T 7 HOH S 9 709 604 HOH HOH . 
T 7 HOH S 10 710 613 HOH HOH . 
T 7 HOH S 11 711 614 HOH HOH . 
T 7 HOH S 12 712 608 HOH HOH . 
T 7 HOH S 13 713 603 HOH HOH . 
T 7 HOH S 14 714 12 HOH HOH . 
T 7 HOH S 15 715 618 HOH HOH . 
T 7 HOH S 16 716 1002 HOH HOH . 
T 7 HOH S 17 717 620 HOH HOH . 
T 7 HOH S 18 718 609 HOH HOH . 
T 7 HOH S 19 719 22 HOH HOH . 
T 7 HOH S 20 720 602 HOH HOH . 
T 7 HOH S 21 721 21 HOH HOH . 
T 7 HOH S 22 722 6 HOH HOH . 
T 7 HOH S 23 723 29 HOH HOH . 
T 7 HOH S 24 724 20 HOH HOH . 
T 7 HOH S 25 725 617 HOH HOH . 
T 7 HOH S 26 726 19 HOH HOH . 
T 7 HOH S 27 727 18 HOH HOH . 
U 7 HOH R 1 701 604 HOH HOH . 
U 7 HOH R 2 702 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . K 6 14.853 21.144 101.679 1 67.61 ? C1 NAG 601 S 1 
HETATM 2 C C2 NAG . . . K 6 16.369 20.951 101.569 1 69.8 ? C2 NAG 601 S 1 
HETATM 3 C C3 NAG . . . K 6 17.104 21.579 102.762 1 71.37 ? C3 NAG 601 S 1 
HETATM 4 C C4 NAG . . . K 6 16.61 22.987 103.093 1 73.14 ? C4 NAG 601 S 1 
HETATM 5 C C5 NAG . . . K 6 15.084 23.031 103.156 1 73.23 ? C5 NAG 601 S 1 
HETATM 6 C C6 NAG . . . K 6 14.574 24.451 103.376 1 74.45 ? C6 NAG 601 S 1 
HETATM 7 C C7 NAG . . . K 6 17.87 19.071 101.088 1 74.61 ? C7 NAG 601 S 1 
HETATM 8 C C8 NAG . . . K 6 18.413 17.929 101.897 1 73.59 ? C8 NAG 601 S 1 
HETATM 9 N N2 NAG . . . K 6 16.677 19.533 101.47 1 71.99 ? N2 NAG 601 S 1 
HETATM 10 O O3 NAG . . . K 6 18.51 21.652 102.496 1 71.85 ? O3 NAG 601 S 1 
HETATM 11 O O4 NAG . . . K 6 17.17 23.399 104.346 1 75.27 ? O4 NAG 601 S 1 
HETATM 12 O O5 NAG . . . K 6 14.547 22.521 101.93 1 71.57 ? O5 NAG 601 S 1 
HETATM 13 O O6 NAG . . . K 6 14.512 25.142 102.122 1 76.53 ? O6 NAG 601 S 1 
HETATM 14 O O7 NAG . . . K 6 18.491 19.543 100.147 1 77.22 ? O7 NAG 601 S 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#