data_7M8I # _model_server_result.job_id i1vXFNcsj_0XWq_zj_km9A _model_server_result.datetime_utc '2024-11-29 03:32:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1603}' # _entry.id 7M8I # _exptl.entry_id 7M8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 223.273 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(5R)-5,6,7,8-tetrahydroimidazo[1,5-a]pyridin-5-yl]benzonitrile _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.073 _cell.angle_gamma 90 _cell.entry_id 7M8I _cell.length_a 140.579 _cell.length_b 208.7 _cell.length_c 124.919 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -50.954492 0 114.054357 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 53 A CYS 112 1_555 D FE1 FES . A FES 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc2 A SG CYS 56 A CYS 115 1_555 D FE2 FES . A FES 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc3 A SG CYS 93 A CYS 152 1_555 D FE2 FES . A FES 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc4 A SG CYS 552 A CYS 1450 1_555 E FE HEM . A HEM 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc5 E FE HEM . A HEM 1602 1_555 F N06 0T3 . A 0T3 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc6 B SG CYS 47 B CYS 106 1_555 G FE1 FES . B FES 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc7 B SG CYS 552 B CYS 1450 1_555 H FE HEM . B HEM 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc8 H FE HEM . B HEM 1602 1_555 I N06 0T3 . B 0T3 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc9 C SG CYS 47 C CYS 106 1_555 J FE1 FES . C FES 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc10 C SG CYS 53 C CYS 112 1_555 J FE1 FES . C FES 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc11 C SG CYS 56 C CYS 115 1_555 J FE2 FES . C FES 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc12 C SG CYS 93 C CYS 152 1_555 J FE2 FES . C FES 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc13 C SG CYS 552 C CYS 1450 1_555 K FE HEM . C HEM 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc14 K FE HEM . C HEM 1602 1_555 L N06 0T3 . C 0T3 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? # _chem_comp.formula 'C14 H13 N3' _chem_comp.formula_weight 223.273 _chem_comp.id 0T3 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(5R)-5,6,7,8-tetrahydroimidazo[1,5-a]pyridin-5-yl]benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms fadrozole # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N17 C16 0T3 trip 1 n n C16 C13 0T3 sing 2 n n C13 C14 0T3 doub 3 n y C13 C12 0T3 sing 4 n y C14 C15 0T3 sing 5 n y C12 C11 0T3 doub 6 n y C15 C10 0T3 doub 7 n y C11 C10 0T3 sing 8 n y C10 C03 0T3 sing 9 n n C01 C02 0T3 sing 10 n n C01 C09 0T3 sing 11 n n C02 C03 0T3 sing 12 n n C03 N04 0T3 sing 13 n n C09 C08 0T3 sing 14 n n N04 C08 0T3 sing 15 n y N04 C05 0T3 sing 16 n y C08 C07 0T3 doub 17 n y C05 N06 0T3 doub 18 n y C07 N06 0T3 sing 19 n y C01 H1 0T3 sing 20 n n C01 H2 0T3 sing 21 n n C02 H3 0T3 sing 22 n n C02 H4 0T3 sing 23 n n C03 H5 0T3 sing 24 n n C05 H6 0T3 sing 25 n n C07 H7 0T3 sing 26 n n C09 H8 0T3 sing 27 n n C09 H9 0T3 sing 28 n n C11 H10 0T3 sing 29 n n C12 H11 0T3 sing 30 n n C14 H12 0T3 sing 31 n n C15 H13 0T3 sing 32 n n # _atom_sites.entry_id 7M8I _atom_sites.fract_transf_matrix[1][1] 0.007113 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003178 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FES A 1 1601 901 FES FES . E 3 HEM A 1 1602 601 HEM HEM . F 4 0T3 A 1 1603 801 0T3 LIG . G 2 FES B 1 1601 901 FES FES . H 3 HEM B 1 1602 601 HEM HEM . I 4 0T3 B 1 1603 801 0T3 LIG . J 2 FES C 1 1601 901 FES FES . K 3 HEM C 1 1602 601 HEM HEM . L 4 0T3 C 1 1603 801 0T3 LIG . M 5 HOH A 1 1701 901 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 0T3 . . . L 4 -35.196 -51.475 19.799 1 52.72 ? C01 0T3 1603 C 1 HETATM 2 C C02 0T3 . . . L 4 -33.704 -51.422 19.501 1 41.95 ? C02 0T3 1603 C 1 HETATM 3 C C03 0T3 . . . L 4 -33.449 -50.576 18.217 1 36.98 ? C03 0T3 1603 C 1 HETATM 4 N N04 0T3 . . . L 4 -34.188 -51.253 17.148 1 47.2 ? N04 0T3 1603 C 1 HETATM 5 C C05 0T3 . . . L 4 -34.025 -51.2 15.756 1 41.01 ? C05 0T3 1603 C 1 HETATM 6 N N06 0T3 . . . L 4 -34.948 -51.96 15.151 1 37.81 ? N06 0T3 1603 C 1 HETATM 7 C C07 0T3 . . . L 4 -35.764 -52.522 16.133 1 46.84 ? C07 0T3 1603 C 1 HETATM 8 C C08 0T3 . . . L 4 -35.304 -52.12 17.399 1 37.22 ? C08 0T3 1603 C 1 HETATM 9 C C09 0T3 . . . L 4 -35.83 -52.329 18.854 1 40.91 ? C09 0T3 1603 C 1 HETATM 10 C C10 0T3 . . . L 4 -33.907 -49.14 18.459 1 43.27 ? C10 0T3 1603 C 1 HETATM 11 C C11 0T3 . . . L 4 -35.095 -48.642 17.903 1 32.73 ? C11 0T3 1603 C 1 HETATM 12 C C12 0T3 . . . L 4 -35.552 -47.334 18.112 1 36.21 ? C12 0T3 1603 C 1 HETATM 13 C C13 0T3 . . . L 4 -34.802 -46.451 18.908 1 25.57 ? C13 0T3 1603 C 1 HETATM 14 C C14 0T3 . . . L 4 -33.604 -46.94 19.467 1 36.22 ? C14 0T3 1603 C 1 HETATM 15 C C15 0T3 . . . L 4 -33.185 -48.247 19.244 1 47.71 ? C15 0T3 1603 C 1 HETATM 16 C C16 0T3 . . . L 4 -35.215 -45.144 19.144 1 27.28 ? C16 0T3 1603 C 1 HETATM 17 N N17 0T3 . . . L 4 -35.564 -44.017 19.352 1 36.87 ? N17 0T3 1603 C 1 HETATM 18 H H1 0T3 . . . L 4 -35.373 -51.817 20.688 1 63.81 ? H1 0T3 1603 C 1 HETATM 19 H H2 0T3 . . . L 4 -35.593 -50.595 19.826 1 63.81 ? H2 0T3 1603 C 1 HETATM 20 H H3 0T3 . . . L 4 -33.212 -51.095 20.269 1 50.9 ? H3 0T3 1603 C 1 HETATM 21 H H4 0T3 . . . L 4 -33.349 -52.321 19.412 1 50.9 ? H4 0T3 1603 C 1 HETATM 22 H H5 0T3 . . . L 4 -32.499 -50.672 18.047 1 44.93 ? H5 0T3 1603 C 1 HETATM 23 H H6 0T3 . . . L 4 -33.364 -50.746 15.285 1 49.76 ? H6 0T3 1603 C 1 HETATM 24 H H7 0T3 . . . L 4 -36.459 -53.078 15.864 1 56.76 ? H7 0T3 1603 C 1 HETATM 25 H H8 0T3 . . . L 4 -35.769 -53.229 19.211 1 49.65 ? H8 0T3 1603 C 1 HETATM 26 H H9 0T3 . . . L 4 -36.78 -52.138 18.814 1 49.65 ? H9 0T3 1603 C 1 HETATM 27 H H10 0T3 . . . L 4 -35.602 -49.217 17.377 1 39.83 ? H10 0T3 1603 C 1 HETATM 28 H H11 0T3 . . . L 4 -36.347 -47.04 17.728 1 44 ? H11 0T3 1603 C 1 HETATM 29 H H12 0T3 . . . L 4 -33.103 -46.366 20 1 44.01 ? H12 0T3 1603 C 1 HETATM 30 H H13 0T3 . . . L 4 -32.387 -48.509 19.643 1 57.81 ? H13 0T3 1603 C 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #