data_7M8X # _model_server_result.job_id cbh-JjTEGUhikW24UTWRAg _model_server_result.datetime_utc '2024-11-01 15:25:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m8x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7M8X # _exptl.entry_id 7M8X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.908 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2-{3-[3-chloro-5-(2-methoxyethoxy)phenyl]-2-oxo-2H-[1,3'-bipyridin]-5-yl}benzonitrile" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.83 _cell.angle_gamma 90 _cell.entry_id 7M8X _cell.length_a 96.766 _cell.length_b 81.27 _cell.length_c 54.519 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M8X _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H20 Cl N3 O3' _chem_comp.formula_weight 457.908 _chem_comp.id YTJ _chem_comp.mon_nstd_flag . _chem_comp.name "2-{3-[3-chloro-5-(2-methoxyethoxy)phenyl]-2-oxo-2H-[1,3'-bipyridin]-5-yl}benzonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 YTJ doub 376 n y C4 N2 YTJ sing 377 n y C5 C6 YTJ sing 378 n y N2 C3 YTJ doub 379 n y C6 C2 YTJ doub 380 n y C3 C2 YTJ sing 381 n y N3 C11 YTJ trip 382 n n C2 N1 YTJ sing 383 n n C11 C10 YTJ sing 384 n n N1 C7 YTJ sing 385 n n N1 C1 YTJ sing 386 n n C7 C8 YTJ doub 387 n n C10 C12 YTJ doub 388 n y C10 C9 YTJ sing 389 n y C12 C13 YTJ sing 390 n y O1 C1 YTJ doub 391 n n C1 C17 YTJ sing 392 n n C8 C9 YTJ sing 393 n n C8 C16 YTJ sing 394 n n C9 C15 YTJ doub 395 n y C13 C14 YTJ doub 396 n y C17 C16 YTJ doub 397 n n C17 C18 YTJ sing 398 n n C15 C14 YTJ sing 399 n y C18 C26 YTJ doub 400 n y C18 C19 YTJ sing 401 n y C26 C22 YTJ sing 402 n y C19 C20 YTJ doub 403 n y C23 C24 YTJ sing 404 n n C23 O2 YTJ sing 405 n n O3 C24 YTJ sing 406 n n O3 C25 YTJ sing 407 n n C22 O2 YTJ sing 408 n n C22 C21 YTJ doub 409 n y C20 C21 YTJ sing 410 n y C20 CL1 YTJ sing 411 n n C24 H15 YTJ sing 412 n n C24 H16 YTJ sing 413 n n C23 H13 YTJ sing 414 n n C23 H14 YTJ sing 415 n n C25 H19 YTJ sing 416 n n C25 H17 YTJ sing 417 n n C25 H18 YTJ sing 418 n n C26 H20 YTJ sing 419 n n C21 H12 YTJ sing 420 n n C12 H6 YTJ sing 421 n n C13 H7 YTJ sing 422 n n C14 H8 YTJ sing 423 n n C15 H9 YTJ sing 424 n n C16 H10 YTJ sing 425 n n C19 H11 YTJ sing 426 n n C3 H1 YTJ sing 427 n n C4 H2 YTJ sing 428 n n C5 H3 YTJ sing 429 n n C6 H4 YTJ sing 430 n n C7 H5 YTJ sing 431 n n # _atom_sites.entry_id 7M8X _atom_sites.fract_transf_matrix[1][1] 0.010334 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005226 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020554 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YTJ A 1 401 303 YTJ M16 . C 3 HOH A 1 501 671 HOH HOH . C 3 HOH A 2 502 695 HOH HOH . C 3 HOH A 3 503 645 HOH HOH . C 3 HOH A 4 504 602 HOH HOH . C 3 HOH A 5 505 604 HOH HOH . C 3 HOH A 6 506 613 HOH HOH . C 3 HOH A 7 507 603 HOH HOH . C 3 HOH A 8 508 627 HOH HOH . C 3 HOH A 9 509 618 HOH HOH . C 3 HOH A 10 510 657 HOH HOH . C 3 HOH A 11 511 626 HOH HOH . C 3 HOH A 12 512 724 HOH HOH . C 3 HOH A 13 513 631 HOH HOH . C 3 HOH A 14 514 647 HOH HOH . C 3 HOH A 15 515 634 HOH HOH . C 3 HOH A 16 516 632 HOH HOH . C 3 HOH A 17 517 742 HOH HOH . C 3 HOH A 18 518 635 HOH HOH . C 3 HOH A 19 519 629 HOH HOH . C 3 HOH A 20 520 663 HOH HOH . C 3 HOH A 21 521 638 HOH HOH . C 3 HOH A 22 522 643 HOH HOH . C 3 HOH A 23 523 683 HOH HOH . C 3 HOH A 24 524 609 HOH HOH . C 3 HOH A 25 525 680 HOH HOH . C 3 HOH A 26 526 628 HOH HOH . C 3 HOH A 27 527 644 HOH HOH . C 3 HOH A 28 528 711 HOH HOH . C 3 HOH A 29 529 625 HOH HOH . C 3 HOH A 30 530 637 HOH HOH . C 3 HOH A 31 531 650 HOH HOH . C 3 HOH A 32 532 622 HOH HOH . C 3 HOH A 33 533 705 HOH HOH . C 3 HOH A 34 534 651 HOH HOH . C 3 HOH A 35 535 708 HOH HOH . C 3 HOH A 36 536 616 HOH HOH . C 3 HOH A 37 537 624 HOH HOH . C 3 HOH A 38 538 692 HOH HOH . C 3 HOH A 39 539 639 HOH HOH . C 3 HOH A 40 540 606 HOH HOH . C 3 HOH A 41 541 674 HOH HOH . C 3 HOH A 42 542 620 HOH HOH . C 3 HOH A 43 543 668 HOH HOH . C 3 HOH A 44 544 661 HOH HOH . C 3 HOH A 45 545 655 HOH HOH . C 3 HOH A 46 546 646 HOH HOH . C 3 HOH A 47 547 677 HOH HOH . C 3 HOH A 48 548 630 HOH HOH . C 3 HOH A 49 549 648 HOH HOH . C 3 HOH A 50 550 717 HOH HOH . C 3 HOH A 51 551 654 HOH HOH . C 3 HOH A 52 552 706 HOH HOH . C 3 HOH A 53 553 673 HOH HOH . C 3 HOH A 54 554 701 HOH HOH . C 3 HOH A 55 555 685 HOH HOH . C 3 HOH A 56 556 640 HOH HOH . C 3 HOH A 57 557 667 HOH HOH . C 3 HOH A 58 558 684 HOH HOH . C 3 HOH A 59 559 615 HOH HOH . C 3 HOH A 60 560 712 HOH HOH . C 3 HOH A 61 561 687 HOH HOH . C 3 HOH A 62 562 697 HOH HOH . C 3 HOH A 63 563 707 HOH HOH . C 3 HOH A 64 564 617 HOH HOH . C 3 HOH A 65 565 679 HOH HOH . C 3 HOH A 66 566 611 HOH HOH . C 3 HOH A 67 567 660 HOH HOH . C 3 HOH A 68 568 664 HOH HOH . C 3 HOH A 69 569 715 HOH HOH . C 3 HOH A 70 570 694 HOH HOH . C 3 HOH A 71 571 700 HOH HOH . C 3 HOH A 72 572 633 HOH HOH . C 3 HOH A 73 573 642 HOH HOH . C 3 HOH A 74 574 693 HOH HOH . C 3 HOH A 75 575 652 HOH HOH . C 3 HOH A 76 576 675 HOH HOH . C 3 HOH A 77 577 601 HOH HOH . C 3 HOH A 78 578 696 HOH HOH . C 3 HOH A 79 579 713 HOH HOH . C 3 HOH A 80 580 686 HOH HOH . C 3 HOH A 81 581 612 HOH HOH . C 3 HOH A 82 582 636 HOH HOH . C 3 HOH A 83 583 703 HOH HOH . C 3 HOH A 84 584 681 HOH HOH . C 3 HOH A 85 585 690 HOH HOH . C 3 HOH A 86 586 720 HOH HOH . C 3 HOH A 87 587 669 HOH HOH . C 3 HOH A 88 588 704 HOH HOH . C 3 HOH A 89 589 649 HOH HOH . C 3 HOH A 90 590 741 HOH HOH . C 3 HOH A 91 591 744 HOH HOH . C 3 HOH A 92 592 710 HOH HOH . C 3 HOH A 93 593 607 HOH HOH . C 3 HOH A 94 594 773 HOH HOH . C 3 HOH A 95 595 698 HOH HOH . C 3 HOH A 96 596 659 HOH HOH . C 3 HOH A 97 597 738 HOH HOH . C 3 HOH A 98 598 676 HOH HOH . C 3 HOH A 99 599 653 HOH HOH . C 3 HOH A 100 600 735 HOH HOH . C 3 HOH A 101 601 722 HOH HOH . C 3 HOH A 102 602 691 HOH HOH . C 3 HOH A 103 603 623 HOH HOH . C 3 HOH A 104 604 729 HOH HOH . C 3 HOH A 105 605 727 HOH HOH . C 3 HOH A 106 606 678 HOH HOH . C 3 HOH A 107 607 763 HOH HOH . C 3 HOH A 108 608 737 HOH HOH . C 3 HOH A 109 609 689 HOH HOH . C 3 HOH A 110 610 726 HOH HOH . C 3 HOH A 111 611 725 HOH HOH . C 3 HOH A 112 612 699 HOH HOH . C 3 HOH A 113 613 718 HOH HOH . C 3 HOH A 114 614 747 HOH HOH . C 3 HOH A 115 615 750 HOH HOH . C 3 HOH A 116 616 745 HOH HOH . C 3 HOH A 117 617 730 HOH HOH . C 3 HOH A 118 618 656 HOH HOH . C 3 HOH A 119 619 756 HOH HOH . C 3 HOH A 120 620 743 HOH HOH . C 3 HOH A 121 621 716 HOH HOH . C 3 HOH A 122 622 732 HOH HOH . C 3 HOH A 123 623 748 HOH HOH . C 3 HOH A 124 624 757 HOH HOH . C 3 HOH A 125 625 758 HOH HOH . C 3 HOH A 126 626 733 HOH HOH . C 3 HOH A 127 627 751 HOH HOH . C 3 HOH A 128 628 754 HOH HOH . C 3 HOH A 129 629 761 HOH HOH . C 3 HOH A 130 630 759 HOH HOH . C 3 HOH A 131 631 764 HOH HOH . C 3 HOH A 132 632 619 HOH HOH . C 3 HOH A 133 633 755 HOH HOH . C 3 HOH A 134 634 740 HOH HOH . C 3 HOH A 135 635 767 HOH HOH . C 3 HOH A 136 636 771 HOH HOH . C 3 HOH A 137 637 775 HOH HOH . C 3 HOH A 138 638 772 HOH HOH . C 3 HOH A 139 639 774 HOH HOH . C 3 HOH A 140 640 776 HOH HOH . C 3 HOH A 141 641 777 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 YTJ . . . B 2 6.262 -5.549 25.376 1 41.1 ? C24 YTJ 401 A 1 HETATM 2 C C23 YTJ . . . B 2 6.634 -4.159 24.858 1 38.24 ? C23 YTJ 401 A 1 HETATM 3 C C22 YTJ . . . B 2 6.617 -1.894 25.517 1 36.35 ? C22 YTJ 401 A 1 HETATM 4 C C25 YTJ . . . B 2 4.18 -5.438 26.438 1 40.05 ? C25 YTJ 401 A 1 HETATM 5 C C26 YTJ . . . B 2 7.324 -1.465 24.383 1 33.09 ? C26 YTJ 401 A 1 HETATM 6 C C21 YTJ . . . B 2 5.936 -0.98 26.29 1 33.2 ? C21 YTJ 401 A 1 HETATM 7 C C11 YTJ . . . B 2 9.787 4.343 19.707 1 34.65 ? C11 YTJ 401 A 1 HETATM 8 C C10 YTJ . . . B 2 10.603 4.282 20.996 1 38.73 ? C10 YTJ 401 A 1 HETATM 9 C C1 YTJ . . . B 2 8.031 -0.223 21.609 1 30.05 ? C1 YTJ 401 A 1 HETATM 10 C C12 YTJ . . . B 2 11.481 5.341 21.211 1 41.99 ? C12 YTJ 401 A 1 HETATM 11 C C13 YTJ . . . B 2 12.27 5.385 22.357 1 40.02 ? C13 YTJ 401 A 1 HETATM 12 C C14 YTJ . . . B 2 12.187 4.365 23.295 1 37.97 ? C14 YTJ 401 A 1 HETATM 13 C C15 YTJ . . . B 2 11.309 3.311 23.089 1 36.6 ? C15 YTJ 401 A 1 HETATM 14 C C16 YTJ . . . B 2 8.907 1.554 22.947 1 33.73 ? C16 YTJ 401 A 1 HETATM 15 C C17 YTJ . . . B 2 8.109 0.418 22.832 1 33.35 ? C17 YTJ 401 A 1 HETATM 16 C C18 YTJ . . . B 2 7.341 -0.111 24.052 1 29.57 ? C18 YTJ 401 A 1 HETATM 17 C C19 YTJ . . . B 2 6.651 0.797 24.83 1 31.73 ? C19 YTJ 401 A 1 HETATM 18 C C2 YTJ . . . B 2 8.597 -0.43 19.258 1 30.1 ? C2 YTJ 401 A 1 HETATM 19 C C20 YTJ . . . B 2 5.957 0.363 25.958 1 37.06 ? C20 YTJ 401 A 1 HETATM 20 C C3 YTJ . . . B 2 7.354 -0.488 18.648 1 30.83 ? C3 YTJ 401 A 1 HETATM 21 C C4 YTJ . . . B 2 8.268 -1.639 16.812 1 27.32 ? C4 YTJ 401 A 1 HETATM 22 C C5 YTJ . . . B 2 9.539 -1.598 17.381 1 32.87 ? C5 YTJ 401 A 1 HETATM 23 C C6 YTJ . . . B 2 9.701 -0.981 18.618 1 30.79 ? C6 YTJ 401 A 1 HETATM 24 C C7 YTJ . . . B 2 9.479 1.331 20.63 1 31.79 ? C7 YTJ 401 A 1 HETATM 25 C C8 YTJ . . . B 2 9.594 2.026 21.831 1 31.46 ? C8 YTJ 401 A 1 HETATM 26 C C9 YTJ . . . B 2 10.502 3.255 21.947 1 36.42 ? C9 YTJ 401 A 1 HETATM 27 N N1 YTJ . . . B 2 8.709 0.24 20.543 1 34.16 ? N1 YTJ 401 A 1 HETATM 28 N N2 YTJ . . . B 2 7.223 -1.092 17.459 1 27.41 ? N2 YTJ 401 A 1 HETATM 29 N N3 YTJ . . . B 2 9.191 4.402 18.749 1 34.52 ? N3 YTJ 401 A 1 HETATM 30 O O1 YTJ . . . B 2 7.233 -1.358 21.494 1 28.93 ? O1 YTJ 401 A 1 HETATM 31 O O2 YTJ . . . B 2 6.567 -3.238 25.902 1 34.78 ? O2 YTJ 401 A 1 HETATM 32 O O3 YTJ . . . B 2 4.879 -5.758 25.273 1 40.07 ? O3 YTJ 401 A 1 HETATM 33 CL CL1 YTJ . . . B 2 5.097 1.528 26.992 1 37.58 ? CL1 YTJ 401 A 1 HETATM 34 H H15 YTJ . . . B 2 6.528 -5.625 26.306 1 49.33 ? H15 YTJ 401 A 1 HETATM 35 H H16 YTJ . . . B 2 6.726 -6.22 24.851 1 49.33 ? H16 YTJ 401 A 1 HETATM 36 H H13 YTJ . . . B 2 6.016 -3.899 24.158 1 45.89 ? H13 YTJ 401 A 1 HETATM 37 H H14 YTJ . . . B 2 7.536 -4.178 24.502 1 45.89 ? H14 YTJ 401 A 1 HETATM 38 H H19 YTJ . . . B 2 3.227 -5.533 26.279 1 48.06 ? H19 YTJ 401 A 1 HETATM 39 H H17 YTJ . . . B 2 4.375 -4.522 26.691 1 48.06 ? H17 YTJ 401 A 1 HETATM 40 H H18 YTJ . . . B 2 4.45 -6.035 27.152 1 48.06 ? H18 YTJ 401 A 1 HETATM 41 H H20 YTJ . . . B 2 7.779 -2.081 23.855 1 39.71 ? H20 YTJ 401 A 1 HETATM 42 H H12 YTJ . . . B 2 5.461 -1.267 27.036 1 39.84 ? H12 YTJ 401 A 1 HETATM 43 H H6 YTJ . . . B 2 11.542 6.025 20.583 1 50.39 ? H6 YTJ 401 A 1 HETATM 44 H H7 YTJ . . . B 2 12.852 6.097 22.495 1 48.02 ? H7 YTJ 401 A 1 HETATM 45 H H8 YTJ . . . B 2 12.718 4.388 24.059 1 45.57 ? H8 YTJ 401 A 1 HETATM 46 H H9 YTJ . . . B 2 11.255 2.63 23.72 1 43.92 ? H9 YTJ 401 A 1 HETATM 47 H H10 YTJ . . . B 2 8.98 1.994 23.763 1 40.48 ? H10 YTJ 401 A 1 HETATM 48 H H11 YTJ . . . B 2 6.649 1.699 24.602 1 38.08 ? H11 YTJ 401 A 1 HETATM 49 H H1 YTJ . . . B 2 6.612 -0.108 19.061 1 36.99 ? H1 YTJ 401 A 1 HETATM 50 H H2 YTJ . . . B 2 8.142 -2.045 15.984 1 32.79 ? H2 YTJ 401 A 1 HETATM 51 H H3 YTJ . . . B 2 10.266 -1.977 16.942 1 39.45 ? H3 YTJ 401 A 1 HETATM 52 H H4 YTJ . . . B 2 10.542 -0.937 19.013 1 36.95 ? H4 YTJ 401 A 1 HETATM 53 H H5 YTJ . . . B 2 9.942 1.627 19.88 1 38.15 ? H5 YTJ 401 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 53 #