data_7M93 # _model_server_result.job_id n1ed59XzX3B0sKtjqooXVg _model_server_result.datetime_utc '2024-11-04 22:33:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m93 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 7M93 # _exptl.entry_id 7M93 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PB28 _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.05 _cell.angle_gamma 90 _cell.entry_id 7M93 _cell.length_a 70.597 _cell.length_b 55.174 _cell.length_c 92.985 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7M93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,K,L,M,N,V,W 1 1 C,D,O,P,Q,R,S,T,U,X,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 L N N ? 2 O N N ? 2 T N N # _chem_comp.formula 'C24 H38 N2 O' _chem_comp.formula_weight 370.571 _chem_comp.id YT1 _chem_comp.mon_nstd_flag . _chem_comp.name PB28 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-cyclohexyl-4-{3-[(1R)-5-methoxy-1,2,3,4-tetrahydronaphthalen-1-yl]propyl}piperazine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C14 YT1 sing 440 n n C13 C12 YT1 sing 441 n n C14 C15 YT1 sing 442 n n C19 C18 YT1 sing 443 n n C19 N YT1 sing 444 n n C18 N1 YT1 sing 445 n n N1 C12 YT1 sing 446 n n N1 C11 YT1 sing 447 n n C9 N YT1 sing 448 n n C9 C8 YT1 sing 449 n n C12 C17 YT1 sing 450 n n N C10 YT1 sing 451 n n C10 C11 YT1 sing 452 n n C22 C21 YT1 doub 453 n y C22 C23 YT1 sing 454 n y C15 C16 YT1 sing 455 n n C7 C8 YT1 sing 456 n n C7 C6 YT1 sing 457 n n C21 C20 YT1 sing 458 n y C23 C1 YT1 doub 459 n y C17 C16 YT1 sing 460 n n C20 C6 YT1 sing 461 n n C20 C2 YT1 doub 462 n y C1 C2 YT1 sing 463 n y C1 O YT1 sing 464 n n C O YT1 sing 465 n n C6 C5 YT1 sing 466 n n C2 C3 YT1 sing 467 n n C5 C4 YT1 sing 468 n n C3 C4 YT1 sing 469 n n C4 H1 YT1 sing 470 n n C4 H2 YT1 sing 471 n n C14 H3 YT1 sing 472 n n C14 H4 YT1 sing 473 n n C5 H5 YT1 sing 474 n n C5 H6 YT1 sing 475 n n C6 H7 YT1 sing 476 n n C11 H8 YT1 sing 477 n n C11 H9 YT1 sing 478 n n C7 H10 YT1 sing 479 n n C7 H11 YT1 sing 480 n n C8 H12 YT1 sing 481 n n C8 H13 YT1 sing 482 n n C9 H14 YT1 sing 483 n n C9 H15 YT1 sing 484 n n C10 H16 YT1 sing 485 n n C10 H17 YT1 sing 486 n n C12 H18 YT1 sing 487 n n C13 H19 YT1 sing 488 n n C13 H20 YT1 sing 489 n n C3 H22 YT1 sing 490 n n C3 H23 YT1 sing 491 n n C H25 YT1 sing 492 n n C H26 YT1 sing 493 n n C H27 YT1 sing 494 n n C15 H28 YT1 sing 495 n n C15 H29 YT1 sing 496 n n C16 H30 YT1 sing 497 n n C16 H31 YT1 sing 498 n n C17 H32 YT1 sing 499 n n C17 H33 YT1 sing 500 n n C18 H34 YT1 sing 501 n n C18 H35 YT1 sing 502 n n C19 H36 YT1 sing 503 n n C19 H37 YT1 sing 504 n n C21 H38 YT1 sing 505 n n C22 H39 YT1 sing 506 n n C23 H40 YT1 sing 507 n n # _atom_sites.entry_id 7M93 _atom_sites.fract_transf_matrix[1][1] 0.014165 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001252 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 YT1 A 1 201 201 YT1 DRG . F 3 OLC A 1 202 301 OLC OLC . G 3 OLC A 1 203 401 OLC OLC . H 3 OLC A 1 204 501 OLC OLC . I 3 OLC A 1 205 601 OLC OLC . J 3 OLC A 1 206 701 OLC OLC . K 3 OLC A 1 207 801 OLC OLC . L 2 YT1 B 1 201 201 YT1 DRG . M 3 OLC B 1 202 301 OLC OLC . N 3 OLC B 1 203 401 OLC OLC . O 2 YT1 C 1 201 201 YT1 DRG . P 3 OLC C 1 202 301 OLC OLC . Q 3 OLC C 1 203 401 OLC OLC . R 3 OLC C 1 204 501 OLC OLC . S 3 OLC C 1 205 301 OLC OLC . T 2 YT1 D 1 201 201 YT1 DRG . U 3 OLC D 1 202 401 OLC OLC . V 4 HOH A 1 301 186 HOH HOH . V 4 HOH A 2 302 156 HOH HOH . V 4 HOH A 3 303 94 HOH HOH . V 4 HOH A 4 304 76 HOH HOH . V 4 HOH A 5 305 184 HOH HOH . V 4 HOH A 6 306 178 HOH HOH . V 4 HOH A 7 307 82 HOH HOH . V 4 HOH A 8 308 74 HOH HOH . V 4 HOH A 9 309 90 HOH HOH . W 4 HOH B 1 301 179 HOH HOH . W 4 HOH B 2 302 158 HOH HOH . W 4 HOH B 3 303 169 HOH HOH . W 4 HOH B 4 304 91 HOH HOH . W 4 HOH B 5 305 112 HOH HOH . W 4 HOH B 6 306 171 HOH HOH . X 4 HOH C 1 301 187 HOH HOH . X 4 HOH C 2 302 188 HOH HOH . X 4 HOH C 3 303 174 HOH HOH . X 4 HOH C 4 304 128 HOH HOH . X 4 HOH C 5 305 121 HOH HOH . X 4 HOH C 6 306 129 HOH HOH . Y 4 HOH D 1 301 23 HOH HOH . Y 4 HOH D 2 302 180 HOH HOH . Y 4 HOH D 3 303 175 HOH HOH . Y 4 HOH D 4 304 135 HOH HOH . Y 4 HOH D 5 305 25 HOH HOH . Y 4 HOH D 6 306 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 YT1 . . . E 2 -5.452 -29.371 33.516 1 57.8 ? C4 YT1 201 A 1 HETATM 2 C C14 YT1 . . . E 2 -0.152 -17.908 29.313 1 43.71 ? C14 YT1 201 A 1 HETATM 3 C C5 YT1 . . . E 2 -5.049 -28.366 32.447 1 56.58 ? C5 YT1 201 A 1 HETATM 4 C C6 YT1 . . . E 2 -3.628 -28.63 31.948 1 56.67 ? C6 YT1 201 A 1 HETATM 5 C C11 YT1 . . . E 2 -0.813 -22.478 31.108 1 48.71 ? C11 YT1 201 A 1 HETATM 6 C C7 YT1 . . . E 2 -3.329 -27.693 30.767 1 49.32 ? C7 YT1 201 A 1 HETATM 7 C C8 YT1 . . . E 2 -3.162 -26.226 31.146 1 48.65 ? C8 YT1 201 A 1 HETATM 8 C C9 YT1 . . . E 2 -3.04 -25.279 29.967 1 43.2 ? C9 YT1 201 A 1 HETATM 9 C C10 YT1 . . . E 2 -1.233 -23.882 30.728 1 42.35 ? C10 YT1 201 A 1 HETATM 10 C C12 YT1 . . . E 2 -0.465 -20.234 30.175 1 46.12 ? C12 YT1 201 A 1 HETATM 11 C C13 YT1 . . . E 2 -0.948 -19.198 29.171 1 40.6 ? C13 YT1 201 A 1 HETATM 12 N N1 YT1 . . . E 2 -1.028 -21.578 29.971 1 46.32 ? N1 YT1 201 A 1 HETATM 13 C C3 YT1 . . . E 2 -5.488 -30.754 32.93 1 49.63 ? C3 YT1 201 A 1 HETATM 14 N N YT1 . . . E 2 -2.652 -23.918 30.356 1 43.32 ? N YT1 201 A 1 HETATM 15 C C YT1 . . . E 2 -4.698 -34.69 32.029 1 47.76 ? C YT1 201 A 1 HETATM 16 O O YT1 . . . E 2 -4.915 -33.311 32.302 1 54.87 ? O YT1 201 A 1 HETATM 17 C C1 YT1 . . . E 2 -4.027 -32.419 31.773 1 61.79 ? C1 YT1 201 A 1 HETATM 18 C C15 YT1 . . . E 2 -0.238 -17.374 30.728 1 44.31 ? C15 YT1 201 A 1 HETATM 19 C C16 YT1 . . . E 2 0.239 -18.409 31.727 1 37.95 ? C16 YT1 201 A 1 HETATM 20 C C17 YT1 . . . E 2 -0.56 -19.698 31.594 1 40.71 ? C17 YT1 201 A 1 HETATM 21 C C18 YT1 . . . E 2 -2.458 -21.57 29.652 1 41.03 ? C18 YT1 201 A 1 HETATM 22 C C19 YT1 . . . E 2 -2.903 -22.968 29.264 1 45.74 ? C19 YT1 201 A 1 HETATM 23 C C2 YT1 . . . E 2 -4.281 -31.079 32.079 1 57.34 ? C2 YT1 201 A 1 HETATM 24 C C20 YT1 . . . E 2 -3.42 -30.085 31.582 1 56.65 ? C20 YT1 201 A 1 HETATM 25 C C21 YT1 . . . E 2 -2.343 -30.46 30.785 1 58.24 ? C21 YT1 201 A 1 HETATM 26 C C22 YT1 . . . E 2 -2.108 -31.793 30.493 1 53.85 ? C22 YT1 201 A 1 HETATM 27 C C23 YT1 . . . E 2 -2.945 -32.779 30.986 1 56.47 ? C23 YT1 201 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #