data_7M93
#
_model_server_result.job_id            EteYr7LncFnzJPerWuvwEw 
_model_server_result.datetime_utc      '2024-11-04 22:35:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7m93 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":201}' 
#
_entry.id    7M93 
#
_exptl.entry_id    7M93 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              370.571 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PB28 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.05 
_cell.angle_gamma         90 
_cell.entry_id            7M93 
_cell.length_a            70.597 
_cell.length_b            55.174 
_cell.length_c            92.985 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7M93 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,L,M,N,V,W 1 1 
C,D,O,P,Q,R,S,T,U,X,Y 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 L N N 
? 2 O N N 
? 2 T N N 
#
_chem_comp.formula           'C24 H38 N2 O' 
_chem_comp.formula_weight    370.571 
_chem_comp.id                YT1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PB28 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-cyclohexyl-4-{3-[(1R)-5-methoxy-1,2,3,4-tetrahydronaphthalen-1-yl]propyl}piperazine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 C14 YT1 sing 440 n n 
C13 C12 YT1 sing 441 n n 
C14 C15 YT1 sing 442 n n 
C19 C18 YT1 sing 443 n n 
C19 N YT1 sing 444 n n 
C18 N1 YT1 sing 445 n n 
N1 C12 YT1 sing 446 n n 
N1 C11 YT1 sing 447 n n 
C9 N YT1 sing 448 n n 
C9 C8 YT1 sing 449 n n 
C12 C17 YT1 sing 450 n n 
N C10 YT1 sing 451 n n 
C10 C11 YT1 sing 452 n n 
C22 C21 YT1 doub 453 n y 
C22 C23 YT1 sing 454 n y 
C15 C16 YT1 sing 455 n n 
C7 C8 YT1 sing 456 n n 
C7 C6 YT1 sing 457 n n 
C21 C20 YT1 sing 458 n y 
C23 C1 YT1 doub 459 n y 
C17 C16 YT1 sing 460 n n 
C20 C6 YT1 sing 461 n n 
C20 C2 YT1 doub 462 n y 
C1 C2 YT1 sing 463 n y 
C1 O YT1 sing 464 n n 
C O YT1 sing 465 n n 
C6 C5 YT1 sing 466 n n 
C2 C3 YT1 sing 467 n n 
C5 C4 YT1 sing 468 n n 
C3 C4 YT1 sing 469 n n 
C4 H1 YT1 sing 470 n n 
C4 H2 YT1 sing 471 n n 
C14 H3 YT1 sing 472 n n 
C14 H4 YT1 sing 473 n n 
C5 H5 YT1 sing 474 n n 
C5 H6 YT1 sing 475 n n 
C6 H7 YT1 sing 476 n n 
C11 H8 YT1 sing 477 n n 
C11 H9 YT1 sing 478 n n 
C7 H10 YT1 sing 479 n n 
C7 H11 YT1 sing 480 n n 
C8 H12 YT1 sing 481 n n 
C8 H13 YT1 sing 482 n n 
C9 H14 YT1 sing 483 n n 
C9 H15 YT1 sing 484 n n 
C10 H16 YT1 sing 485 n n 
C10 H17 YT1 sing 486 n n 
C12 H18 YT1 sing 487 n n 
C13 H19 YT1 sing 488 n n 
C13 H20 YT1 sing 489 n n 
C3 H22 YT1 sing 490 n n 
C3 H23 YT1 sing 491 n n 
C H25 YT1 sing 492 n n 
C H26 YT1 sing 493 n n 
C H27 YT1 sing 494 n n 
C15 H28 YT1 sing 495 n n 
C15 H29 YT1 sing 496 n n 
C16 H30 YT1 sing 497 n n 
C16 H31 YT1 sing 498 n n 
C17 H32 YT1 sing 499 n n 
C17 H33 YT1 sing 500 n n 
C18 H34 YT1 sing 501 n n 
C18 H35 YT1 sing 502 n n 
C19 H36 YT1 sing 503 n n 
C19 H37 YT1 sing 504 n n 
C21 H38 YT1 sing 505 n n 
C22 H39 YT1 sing 506 n n 
C23 H40 YT1 sing 507 n n 
#
_atom_sites.entry_id                     7M93 
_atom_sites.fract_transf_matrix[1][1]    0.014165 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001252 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018124 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010796 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 YT1 A 1 201 201 YT1 DRG . 
F 3 OLC A 1 202 301 OLC OLC . 
G 3 OLC A 1 203 401 OLC OLC . 
H 3 OLC A 1 204 501 OLC OLC . 
I 3 OLC A 1 205 601 OLC OLC . 
J 3 OLC A 1 206 701 OLC OLC . 
K 3 OLC A 1 207 801 OLC OLC . 
L 2 YT1 B 1 201 201 YT1 DRG . 
M 3 OLC B 1 202 301 OLC OLC . 
N 3 OLC B 1 203 401 OLC OLC . 
O 2 YT1 C 1 201 201 YT1 DRG . 
P 3 OLC C 1 202 301 OLC OLC . 
Q 3 OLC C 1 203 401 OLC OLC . 
R 3 OLC C 1 204 501 OLC OLC . 
S 3 OLC C 1 205 301 OLC OLC . 
T 2 YT1 D 1 201 201 YT1 DRG . 
U 3 OLC D 1 202 401 OLC OLC . 
V 4 HOH A 1 301 186 HOH HOH . 
V 4 HOH A 2 302 156 HOH HOH . 
V 4 HOH A 3 303 94 HOH HOH . 
V 4 HOH A 4 304 76 HOH HOH . 
V 4 HOH A 5 305 184 HOH HOH . 
V 4 HOH A 6 306 178 HOH HOH . 
V 4 HOH A 7 307 82 HOH HOH . 
V 4 HOH A 8 308 74 HOH HOH . 
V 4 HOH A 9 309 90 HOH HOH . 
W 4 HOH B 1 301 179 HOH HOH . 
W 4 HOH B 2 302 158 HOH HOH . 
W 4 HOH B 3 303 169 HOH HOH . 
W 4 HOH B 4 304 91 HOH HOH . 
W 4 HOH B 5 305 112 HOH HOH . 
W 4 HOH B 6 306 171 HOH HOH . 
X 4 HOH C 1 301 187 HOH HOH . 
X 4 HOH C 2 302 188 HOH HOH . 
X 4 HOH C 3 303 174 HOH HOH . 
X 4 HOH C 4 304 128 HOH HOH . 
X 4 HOH C 5 305 121 HOH HOH . 
X 4 HOH C 6 306 129 HOH HOH . 
Y 4 HOH D 1 301 23 HOH HOH . 
Y 4 HOH D 2 302 180 HOH HOH . 
Y 4 HOH D 3 303 175 HOH HOH . 
Y 4 HOH D 4 304 135 HOH HOH . 
Y 4 HOH D 5 305 25 HOH HOH . 
Y 4 HOH D 6 306 136 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 YT1 . . . T 2 33.491 45.869 20.076 1 62.67 ? C4 YT1 201 D 1 
HETATM 2 C C14 YT1 . . . T 2 29.102 33.987 15.692 1 42.56 ? C14 YT1 201 D 1 
HETATM 3 C C5 YT1 . . . T 2 33.058 44.786 19.098 1 70.35 ? C5 YT1 201 D 1 
HETATM 4 C C6 YT1 . . . T 2 32.016 43.851 19.719 1 65.16 ? C6 YT1 201 D 1 
HETATM 5 C C11 YT1 . . . T 2 32.004 36.957 18.386 1 49.37 ? C11 YT1 201 D 1 
HETATM 6 C C7 YT1 . . . T 2 31.321 43.166 18.531 1 66.74 ? C7 YT1 201 D 1 
HETATM 7 C C8 YT1 . . . T 2 30.822 41.742 18.764 1 55.22 ? C8 YT1 201 D 1 
HETATM 8 C C9 YT1 . . . T 2 31.917 40.694 18.854 1 49.79 ? C9 YT1 201 D 1 
HETATM 9 C C10 YT1 . . . T 2 32.534 38.371 18.55 1 52.76 ? C10 YT1 201 D 1 
HETATM 10 C C12 YT1 . . . T 2 30.67 35.484 16.96 1 45.22 ? C12 YT1 201 D 1 
HETATM 11 C C13 YT1 . . . T 2 29.629 35.41 15.848 1 48.25 ? C13 YT1 201 D 1 
HETATM 12 N N1 YT1 . . . T 2 31.158 36.854 17.189 1 50.46 ? N1 YT1 201 D 1 
HETATM 13 C C3 YT1 . . . T 2 32.32 46.742 20.414 1 65.48 ? C3 YT1 201 D 1 
HETATM 14 N N YT1 . . . T 2 31.427 39.324 18.654 1 49.78 ? N YT1 201 D 1 
HETATM 15 C C YT1 . . . T 2 29.334 48.606 22.591 1 69.45 ? C YT1 201 D 1 
HETATM 16 O O YT1 . . . T 2 30.331 47.907 21.849 1 76.31 ? O YT1 201 D 1 
HETATM 17 C C1 YT1 . . . T 2 30.153 46.565 21.664 1 75.28 ? C1 YT1 201 D 1 
HETATM 18 C C15 YT1 . . . T 2 30.232 33.014 15.437 1 38.47 ? C15 YT1 201 D 1 
HETATM 19 C C16 YT1 . . . T 2 31.256 33.082 16.551 1 46.37 ? C16 YT1 201 D 1 
HETATM 20 C C17 YT1 . . . T 2 31.802 34.497 16.712 1 44.6 ? C17 YT1 201 D 1 
HETATM 21 C C18 YT1 . . . T 2 30.063 37.827 17.281 1 49.15 ? C18 YT1 201 D 1 
HETATM 22 C C19 YT1 . . . T 2 30.611 39.23 17.442 1 52.04 ? C19 YT1 201 D 1 
HETATM 23 C C2 YT1 . . . T 2 31.135 45.935 20.89 1 71.82 ? C2 YT1 201 D 1 
HETATM 24 C C20 YT1 . . . T 2 31.013 44.564 20.605 1 70.05 ? C20 YT1 201 D 1 
HETATM 25 C C21 YT1 . . . T 2 29.93 43.862 21.125 1 68.81 ? C21 YT1 201 D 1 
HETATM 26 C C22 YT1 . . . T 2 28.978 44.498 21.9 1 74.73 ? C22 YT1 201 D 1 
HETATM 27 C C23 YT1 . . . T 2 29.08 45.85 22.171 1 75.28 ? C23 YT1 201 D 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           27 
#