data_7M9A # _model_server_result.job_id C1wIDIsgxpxdzsmEOZLe8A _model_server_result.datetime_utc '2024-11-09 02:35:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7m9a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":301}' # _entry.id 7M9A # _exptl.entry_id 7M9A _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 M N1 DA 1 M DA 1 1_555 N N3 DT 27 N DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 M N6 DA 1 M DA 1 1_555 N O4 DT 27 N DT 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 M N1 DA 2 M DA 2 1_555 N N3 DT 26 N DT 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 M N6 DA 2 M DA 2 1_555 N O4 DT 26 N DT 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog5 M N6 DA 3 M DA 3 1_555 N O4 DT 25 N DT 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 M N1 DA 4 M DA 4 1_555 N N3 DT 24 N DT 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 M N6 DA 4 M DA 4 1_555 N O4 DT 24 N DT 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 M N1 DA 6 M DA 6 1_555 N N3 DT 22 N DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 M N6 DA 6 M DA 6 1_555 N O4 DT 22 N DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 M N1 DA 6 M DA 6 1_555 N N3 DT 23 N DT 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 M N6 DA 6 M DA 6 1_555 N O4 DT 23 N DT 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 M N1 DA 7 M DA 7 1_555 N N3 DT 21 N DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 M N6 DA 7 M DA 7 1_555 N O4 DT 21 N DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 M N1 DA 8 M DA 8 1_555 N N3 DT 20 N DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 M N6 DA 8 M DA 8 1_555 N O4 DT 20 N DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 M N1 DA 9 M DA 9 1_555 N N3 DT 19 N DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 M N6 DA 9 M DA 9 1_555 N O4 DT 19 N DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 M N1 DA 10 M DA 10 1_555 N N3 DT 18 N DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 M N6 DA 10 M DA 10 1_555 N O4 DT 18 N DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 M N1 DA 11 M DA 11 1_555 N N3 DT 17 N DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 M N6 DA 11 M DA 11 1_555 N O4 DT 17 N DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 M N1 DA 12 M DA 12 1_555 N N3 DT 16 N DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 M N6 DA 12 M DA 12 1_555 N O4 DT 16 N DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 M N1 DA 13 M DA 13 1_555 N N3 DT 15 N DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 M N6 DA 13 M DA 13 1_555 N O4 DT 15 N DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 M N1 DA 14 M DA 14 1_555 N N3 DT 14 N DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 M N6 DA 14 M DA 14 1_555 N O4 DT 14 N DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 M N1 DA 15 M DA 15 1_555 N N3 DT 13 N DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 M N6 DA 15 M DA 15 1_555 N O4 DT 13 N DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 M N1 DA 16 M DA 16 1_555 N N3 DT 12 N DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 M N6 DA 16 M DA 16 1_555 N O4 DT 12 N DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 M N1 DA 17 M DA 17 1_555 N N3 DT 11 N DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 M N6 DA 17 M DA 17 1_555 N O4 DT 11 N DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 M N1 DA 18 M DA 18 1_555 N N3 DT 10 N DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 M N6 DA 18 M DA 18 1_555 N O4 DT 10 N DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 M N1 DA 19 M DA 19 1_555 N N3 DT 9 N DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 M N6 DA 19 M DA 19 1_555 N O4 DT 9 N DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 M N1 DA 20 M DA 20 1_555 N N3 DT 8 N DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 M N6 DA 20 M DA 20 1_555 N O4 DT 8 N DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 M N1 DA 21 M DA 21 1_555 N N3 DT 7 N DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 M N6 DA 21 M DA 21 1_555 N O4 DT 7 N DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 M N1 DA 22 M DA 22 1_555 N N3 DT 6 N DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 M N6 DA 22 M DA 22 1_555 N O4 DT 6 N DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 M N1 DA 23 M DA 23 1_555 N N3 DT 5 N DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 M N6 DA 23 M DA 23 1_555 N O4 DT 5 N DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 M N1 DA 24 M DA 24 1_555 N N3 DT 4 N DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 M N6 DA 24 M DA 24 1_555 N O4 DT 4 N DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog48 M N1 DA 25 M DA 25 1_555 N N3 DT 3 N DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog49 M N6 DA 25 M DA 25 1_555 N O4 DT 3 N DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog50 M N1 DA 26 M DA 26 1_555 N N3 DT 2 N DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog51 M N6 DA 26 M DA 26 1_555 N O4 DT 2 N DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog52 M N1 DA 27 M DA 27 1_555 N N3 DT 1 N DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog53 M N6 DA 27 M DA 27 1_555 N O4 DT 1 N DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7M9A _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 4 ADP B 1 301 301 ADP ADP . P 4 ADP C 1 301 301 ADP ADP . Q 4 ADP D 1 301 301 ADP ADP . R 4 ADP E 1 301 301 ADP ADP . S 4 ADP F 1 301 301 ADP ADP . T 4 ADP H 1 301 301 ADP ADP . U 4 ADP I 1 301 301 ADP ADP . V 4 ADP J 1 301 301 ADP ADP . W 4 ADP K 1 301 301 ADP ADP . X 4 ADP L 1 301 301 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . S 4 204.787 152.477 163.941 1 40.96 ? PB ADP 301 F 1 HETATM 2 O O1B ADP . . . S 4 203.486 153.237 163.983 1 40.96 ? O1B ADP 301 F 1 HETATM 3 O O2B ADP . . . S 4 205.912 153.19 164.625 1 40.96 ? O2B ADP 301 F 1 HETATM 4 O O3B ADP . . . S 4 204.69 151.013 164.289 1 40.96 ? O3B ADP 301 F 1 HETATM 5 P PA ADP . . . S 4 205.186 153.801 161.489 1 40.96 ? PA ADP 301 F 1 HETATM 6 O O1A ADP . . . S 4 204.375 153.486 160.256 1 40.96 ? O1A ADP 301 F 1 HETATM 7 O O2A ADP . . . S 4 204.835 154.99 162.351 1 40.96 ? O2A ADP 301 F 1 HETATM 8 O O3A ADP . . . S 4 205.242 152.475 162.398 1 40.96 ? O3A ADP 301 F 1 HETATM 9 O O5' ADP . . . S 4 206.722 153.969 161.04 1 40.96 ? O5' ADP 301 F 1 HETATM 10 C C5' ADP . . . S 4 207.041 154.792 159.924 1 40.96 ? C5' ADP 301 F 1 HETATM 11 C C4' ADP . . . S 4 208.548 154.855 159.715 1 40.96 ? C4' ADP 301 F 1 HETATM 12 O O4' ADP . . . S 4 209.186 153.639 160.121 1 40.96 ? O4' ADP 301 F 1 HETATM 13 C C3' ADP . . . S 4 208.86 155.067 158.244 1 40.96 ? C3' ADP 301 F 1 HETATM 14 O O3' ADP . . . S 4 209.524 156.319 158.053 1 40.96 ? O3' ADP 301 F 1 HETATM 15 C C2' ADP . . . S 4 209.783 153.929 157.87 1 40.96 ? C2' ADP 301 F 1 HETATM 16 O O2' ADP . . . S 4 210.926 154.417 157.168 1 40.96 ? O2' ADP 301 F 1 HETATM 17 C C1' ADP . . . S 4 210.205 153.286 159.181 1 40.96 ? C1' ADP 301 F 1 HETATM 18 N N9 ADP . . . S 4 210.344 151.803 159.101 1 40.96 ? N9 ADP 301 F 1 HETATM 19 C C8 ADP . . . S 4 210.527 151.019 160.17 1 40.96 ? C8 ADP 301 F 1 HETATM 20 N N7 ADP . . . S 4 210.648 149.71 159.844 1 40.96 ? N7 ADP 301 F 1 HETATM 21 C C5 ADP . . . S 4 210.542 149.631 158.511 1 40.96 ? C5 ADP 301 F 1 HETATM 22 C C6 ADP . . . S 4 210.576 148.536 157.513 1 40.96 ? C6 ADP 301 F 1 HETATM 23 N N6 ADP . . . S 4 210.749 147.244 157.878 1 40.96 ? N6 ADP 301 F 1 HETATM 24 N N1 ADP . . . S 4 210.427 148.872 156.22 1 40.96 ? N1 ADP 301 F 1 HETATM 25 C C2 ADP . . . S 4 210.253 150.149 155.859 1 40.96 ? C2 ADP 301 F 1 HETATM 26 N N3 ADP . . . S 4 210.215 151.189 156.694 1 40.96 ? N3 ADP 301 F 1 HETATM 27 C C4 ADP . . . S 4 210.354 151.01 158.024 1 40.96 ? C4 ADP 301 F 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #