data_7MAT # _model_server_result.job_id Ycyp9Qrmygj9-JS_8cepKA _model_server_result.datetime_utc '2024-11-09 02:46:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7mat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7MAT # _exptl.entry_id 7MAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 501.021 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-phenylalaninamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104 _cell.angle_gamma 90 _cell.entry_id 7MAT _cell.length_a 47.973 _cell.length_b 105.769 _cell.length_c 54.389 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7MAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C3 _struct_conn.ptnr2_label_comp_id H37 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id H37 _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.766 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H33 Cl N6 O3' _chem_comp.formula_weight 501.021 _chem_comp.id H37 _chem_comp.mon_nstd_flag . _chem_comp.name D-phenylalanyl-N-[(3S)-6-carbamimidamido-1-chloro-2-oxohexan-3-yl]-L-phenylalaninamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms FFRCK # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O H37 doub 129 n n N HN H37 sing 130 n n N HNA H37 sing 131 n n C1 O1 H37 doub 132 n n C1 N2 H37 sing 133 n n N1 C H37 sing 134 n n N1 CA1 H37 sing 135 n n N1 HN1 H37 sing 136 n n C2 O2 H37 doub 137 n n C2 CA2 H37 sing 138 n n N2 CA2 H37 sing 139 n n N2 HN2 H37 sing 140 n n C3 C2 H37 sing 141 n n C3 H3 H37 sing 142 n n C3 H3A H37 sing 143 n n C3 CL1 H37 sing 144 n n CA C H37 sing 145 n n CA N H37 sing 146 n n CA HA H37 sing 147 n n CB CA H37 sing 148 n n CB CG H37 sing 149 n n CB HB H37 sing 150 n n CB HBA H37 sing 151 n n CD NE H37 sing 152 n n CD HD H37 sing 153 n n CD HDA H37 sing 154 n n NE CZ2 H37 sing 155 n n NE HNE H37 sing 156 n n CG CD1 H37 sing 157 n y CZ CE1 H37 sing 158 n y CZ HZ H37 sing 159 n n CD11 CG1 H37 sing 160 n y CD11 HD11 H37 sing 161 n n CE11 CD11 H37 doub 162 n y CE11 CZ1 H37 sing 163 n y CE11 HE11 H37 sing 164 n n CD21 HD21 H37 sing 165 n n CE21 CD21 H37 sing 166 n y CE21 HE21 H37 sing 167 n n CA1 C1 H37 sing 168 n n CA1 HA1 H37 sing 169 n n CA2 CB2 H37 sing 170 n n CA2 HA2 H37 sing 171 n n CB1 CA1 H37 sing 172 n n CB1 HB1 H37 sing 173 n n CB1 HB1A H37 sing 174 n n CB2 CG2 H37 sing 175 n n CB2 HB2 H37 sing 176 n n CB2 HB2A H37 sing 177 n n CD1 CE1 H37 doub 178 n y CD1 HD1 H37 sing 179 n n CD2 CG H37 doub 180 n y CD2 CE2 H37 sing 181 n y CD2 HD2 H37 sing 182 n n CE1 HE1 H37 sing 183 n n CE2 CZ H37 doub 184 n y CE2 HE2 H37 sing 185 n n CG1 CD21 H37 doub 186 n y CG1 CB1 H37 sing 187 n n CG2 CD H37 sing 188 n n CG2 HG2 H37 sing 189 n n CG2 HG2A H37 sing 190 n n NH1 CZ2 H37 doub 191 n n NH1 HNH1 H37 sing 192 n n NH2 HNH2 H37 sing 193 n n NH2 HNHA H37 sing 194 n n CZ1 CE21 H37 doub 195 n y CZ1 HZ1 H37 sing 196 n n CZ2 NH2 H37 sing 197 n n # _atom_sites.entry_id 7MAT _atom_sites.fract_transf_matrix[1][1] 0.020845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005198 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 H37 A 1 401 402 H37 LIG . D 3 SO4 B 1 401 3 SO4 SO4 . E 2 H37 B 1 402 401 H37 LIG . F 4 HOH A 1 501 12 HOH HOH . F 4 HOH A 2 502 11 HOH HOH . F 4 HOH A 3 503 5 HOH HOH . F 4 HOH A 4 504 8 HOH HOH . F 4 HOH A 5 505 10 HOH HOH . F 4 HOH A 6 506 4 HOH HOH . F 4 HOH A 7 507 3 HOH HOH . F 4 HOH A 8 508 24 HOH HOH . F 4 HOH A 9 509 17 HOH HOH . F 4 HOH A 10 510 22 HOH HOH . F 4 HOH A 11 511 33 HOH HOH . F 4 HOH A 12 512 32 HOH HOH . G 4 HOH B 1 501 28 HOH HOH . G 4 HOH B 2 502 1 HOH HOH . G 4 HOH B 3 503 2 HOH HOH . G 4 HOH B 4 504 9 HOH HOH . G 4 HOH B 5 505 18 HOH HOH . G 4 HOH B 6 506 21 HOH HOH . G 4 HOH B 7 507 27 HOH HOH . G 4 HOH B 8 508 30 HOH HOH . G 4 HOH B 9 509 6 HOH HOH . G 4 HOH B 10 510 7 HOH HOH . G 4 HOH B 11 511 20 HOH HOH . G 4 HOH B 12 512 13 HOH HOH . G 4 HOH B 13 513 16 HOH HOH . G 4 HOH B 14 514 29 HOH HOH . G 4 HOH B 15 515 31 HOH HOH . G 4 HOH B 16 516 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N H37 . . . C 2 31.646 -5.013 2.168 1 40.17 ? N H37 401 A 1 HETATM 2 C CA H37 . . . C 2 32.655 -6.042 2.131 1 49.51 ? CA H37 401 A 1 HETATM 3 C C H37 . . . C 2 32.034 -7.359 1.702 1 48.91 ? C H37 401 A 1 HETATM 4 O O H37 . . . C 2 31.057 -7.366 1.056 1 50.45 ? O H37 401 A 1 HETATM 5 C CB H37 . . . C 2 33.784 -5.718 1.152 1 54.16 ? CB H37 401 A 1 HETATM 6 C CG H37 . . . C 2 33.321 -4.978 -0.101 1 49.88 ? CG H37 401 A 1 HETATM 7 C CD1 H37 . . . C 2 32.834 -5.669 -1.192 1 50 ? CD1 H37 401 A 1 HETATM 8 C CD2 H37 . . . C 2 33.41 -3.605 -0.165 1 55.47 ? CD2 H37 401 A 1 HETATM 9 C CE1 H37 . . . C 2 32.428 -5.006 -2.328 1 56.84 ? CE1 H37 401 A 1 HETATM 10 C CE2 H37 . . . C 2 33.003 -2.943 -1.3 1 54.69 ? CE2 H37 401 A 1 HETATM 11 C CZ H37 . . . C 2 32.509 -3.634 -2.385 1 54.44 ? CZ H37 401 A 1 HETATM 12 N N1 H37 . . . C 2 32.709 -8.573 2.094 1 43.95 ? N1 H37 401 A 1 HETATM 13 C CA1 H37 . . . C 2 32.242 -9.894 1.761 1 38.57 ? CA1 H37 401 A 1 HETATM 14 C C1 H37 . . . C 2 32.172 -10.585 3.091 1 38.12 ? C1 H37 401 A 1 HETATM 15 O O1 H37 . . . C 2 32.476 -9.937 4.028 1 46.69 ? O1 H37 401 A 1 HETATM 16 C CB1 H37 . . . C 2 33.24 -10.572 0.824 1 52.86 ? CB1 H37 401 A 1 HETATM 17 C CG1 H37 . . . C 2 32.942 -10.1 -0.58 1 48.47 ? CG1 H37 401 A 1 HETATM 18 C CD11 H37 . . . C 2 31.805 -10.573 -1.194 1 47.23 ? CD11 H37 401 A 1 HETATM 19 C CD21 H37 . . . C 2 33.808 -9.245 -1.238 1 51.51 ? CD21 H37 401 A 1 HETATM 20 C CE11 H37 . . . C 2 31.518 -10.175 -2.462 1 49.52 ? CE11 H37 401 A 1 HETATM 21 C CE21 H37 . . . C 2 33.513 -8.856 -2.523 1 53.46 ? CE21 H37 401 A 1 HETATM 22 C CZ1 H37 . . . C 2 32.372 -9.318 -3.118 1 44.8 ? CZ1 H37 401 A 1 HETATM 23 N N2 H37 . . . C 2 31.755 -11.972 3.114 1 49.88 ? N2 H37 401 A 1 HETATM 24 C CA2 H37 . . . C 2 31.558 -12.812 4.27 1 49.07 ? CA2 H37 401 A 1 HETATM 25 C C2 H37 . . . C 2 30.409 -12.02 4.837 1 51.98 ? C2 H37 401 A 1 HETATM 26 O O2 H37 . . . C 2 30.512 -11.193 5.649 1 61.71 ? O2 H37 401 A 1 HETATM 27 C CB2 H37 . . . C 2 32.75 -13.021 5.207 1 50.18 ? CB2 H37 401 A 1 HETATM 28 C CG2 H37 . . . C 2 32.379 -14.122 6.208 1 53.7 ? CG2 H37 401 A 1 HETATM 29 C CD H37 . . . C 2 33.449 -14.298 7.282 1 64.9 ? CD H37 401 A 1 HETATM 30 N NE H37 . . . C 2 32.829 -14.287 8.594 1 57.46 ? NE H37 401 A 1 HETATM 31 C CZ2 H37 . . . C 2 32.441 -13.081 9.323 1 57.06 ? CZ2 H37 401 A 1 HETATM 32 N NH2 H37 . . . C 2 31.835 -13.222 10.631 1 65.64 ? NH2 H37 401 A 1 HETATM 33 N NH1 H37 . . . C 2 32.59 -11.907 8.901 1 53.22 ? NH1 H37 401 A 1 HETATM 34 C C3 H37 . . . C 2 29.09 -12.23 4.174 1 30.46 ? C3 H37 401 A 1 HETATM 35 H HN H37 . . . C 2 30.973 -5.246 1.636 1 48.21 ? HN H37 401 A 1 HETATM 36 H HNA H37 . . . C 2 31.347 -4.918 2.998 1 48.21 ? HNA H37 401 A 1 HETATM 37 H HA H37 . . . C 2 33.027 -6.136 3.021 1 59.42 ? HA H37 401 A 1 HETATM 38 H HB H37 . . . C 2 34.206 -6.547 0.875 1 65 ? HB H37 401 A 1 HETATM 39 H HBA H37 . . . C 2 34.447 -5.184 1.614 1 65 ? HBA H37 401 A 1 HETATM 40 H HD1 H37 . . . C 2 32.77 -6.587 -1.157 1 60.01 ? HD1 H37 401 A 1 HETATM 41 H HD2 H37 . . . C 2 33.736 -3.12 0.556 1 66.58 ? HD2 H37 401 A 1 HETATM 42 H HE1 H37 . . . C 2 32.104 -5.481 -3.055 1 68.21 ? HE1 H37 401 A 1 HETATM 43 H HE2 H37 . . . C 2 33.067 -2.022 -1.326 1 65.64 ? HE2 H37 401 A 1 HETATM 44 H HZ H37 . . . C 2 32.237 -3.18 -3.15 1 65.34 ? HZ H37 401 A 1 HETATM 45 H HN1 H37 . . . C 2 33.422 -8.505 2.567 1 52.75 ? HN1 H37 401 A 1 HETATM 46 H HA1 H37 . . . C 2 31.346 -9.883 1.397 1 46.29 ? HA1 H37 401 A 1 HETATM 47 H HB1 H37 . . . C 2 34.147 -10.341 1.072 1 63.45 ? HB1 H37 401 A 1 HETATM 48 H HB1A H37 . . . C 2 33.153 -11.535 0.839 1 63.45 ? HB1A H37 401 A 1 HETATM 49 H HD11 H37 . . . C 2 31.228 -11.152 -0.752 1 56.69 ? HD11 H37 401 A 1 HETATM 50 H HD21 H37 . . . C 2 34.58 -8.932 -0.826 1 61.82 ? HD21 H37 401 A 1 HETATM 51 H HE11 H37 . . . C 2 30.744 -10.482 -2.871 1 59.44 ? HE11 H37 401 A 1 HETATM 52 H HE21 H37 . . . C 2 34.066 -8.27 -2.981 1 64.16 ? HE21 H37 401 A 1 HETATM 53 H HZ1 H37 . . . C 2 32.167 -9.04 -3.972 1 53.77 ? HZ1 H37 401 A 1 HETATM 54 H HN2 H37 . . . C 2 31.54 -12.308 2.377 1 59.86 ? HN2 H37 401 A 1 HETATM 55 H HA2 H37 . . . C 2 31.225 -13.673 3.968 1 58.89 ? HA2 H37 401 A 1 HETATM 56 H HB2 H37 . . . C 2 32.973 -12.198 5.666 1 60.22 ? HB2 H37 401 A 1 HETATM 57 H HB2A H37 . . . C 2 33.511 -13.312 4.683 1 60.22 ? HB2A H37 401 A 1 HETATM 58 H HG2 H37 . . . C 2 31.538 -13.909 6.64 1 64.45 ? HG2 H37 401 A 1 HETATM 59 H HG2A H37 . . . C 2 32.28 -14.966 5.74 1 64.45 ? HG2A H37 401 A 1 HETATM 60 H HD H37 . . . C 2 34.13 -13.613 7.217 1 77.89 ? HD H37 401 A 1 HETATM 61 H HDA H37 . . . C 2 33.869 -15.161 7.167 1 77.89 ? HDA H37 401 A 1 HETATM 62 H HNE H37 . . . C 2 32.688 -15.051 8.962 1 68.97 ? HNE H37 401 A 1 HETATM 63 H HNH2 H37 . . . C 2 31.598 -12.518 11.063 1 78.78 ? HNH2 H37 401 A 1 HETATM 64 H HNHA H37 . . . C 2 31.701 -13.999 10.975 1 78.78 ? HNHA H37 401 A 1 HETATM 65 H HNH1 H37 . . . C 2 32.945 -11.703 8.117 1 63.87 ? HNH1 H37 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 65 #