data_7MBP
#
_model_server_result.job_id            nNXRUKd9YzPgZ-N_-boTEA 
_model_server_result.datetime_utc      '2025-07-19 11:06:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mbp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1503}' 
#
_entry.id    7MBP 
#
_exptl.entry_id    7MBP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              841.033 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MBP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MBP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
? 4 M N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 921 A ASN 921 1_555 E C1 NAG . A NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 B ND2 ASN 921 B ASN 921 1_555 H C1 NAG . B NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 C ND2 ASN 921 C ASN 921 1_555 K C1 NAG . C NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale4 D ND2 ASN 921 D ASN 921 1_555 O C1 NAG . D NAG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C44 H72 O15' 
_chem_comp.formula_weight    841.033 
_chem_comp.id                YUY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2-(hydroxymethyl)-4-{[(25R)-10alpha,14beta,17beta-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 YUY sing 481 n n 
C1 C5 YUY sing 482 n n 
C1 C2 YUY sing 483 n n 
C5 O YUY sing 484 n n 
C2 C3 YUY sing 485 n n 
O C4 YUY sing 486 n n 
C3 C4 YUY sing 487 n n 
C26 C25 YUY sing 488 n n 
C4 C25 YUY sing 489 n n 
C4 O1 YUY sing 490 n n 
C25 C24 YUY sing 491 n n 
O1 C6 YUY sing 492 n n 
C24 C6 YUY sing 493 n n 
C24 C22 YUY sing 494 n n 
C6 C7 YUY sing 495 n n 
C22 C23 YUY sing 496 n n 
C22 C21 YUY sing 497 n n 
C22 C8 YUY sing 498 n n 
C7 C8 YUY sing 499 n n 
C21 C20 YUY sing 500 n n 
C8 C9 YUY sing 501 n n 
C20 C19 YUY sing 502 n n 
C9 C19 YUY sing 503 n n 
C9 C10 YUY sing 504 n n 
C19 C17 YUY sing 505 n n 
C10 C11 YUY sing 506 n n 
C17 C16 YUY sing 507 n n 
C17 C18 YUY sing 508 n n 
C17 C12 YUY sing 509 n n 
C11 C12 YUY doub 510 n n 
C16 C15 YUY sing 511 n n 
C12 C13 YUY sing 512 n n 
C15 C14 YUY sing 513 n n 
C13 C14 YUY sing 514 n n 
C14 O2 YUY sing 515 n n 
O2 C27 YUY sing 516 n n 
C27 C28 YUY sing 517 n n 
C28 C29 YUY sing 518 n n 
C29 C43 YUY sing 519 n n 
C29 C30 YUY sing 520 n n 
C43 O14 YUY sing 521 n n 
O3 C30 YUY sing 522 n n 
O3 C31 YUY sing 523 n n 
O13 C32 YUY sing 524 n n 
C32 C31 YUY sing 525 n n 
C32 C33 YUY sing 526 n n 
C31 O4 YUY sing 527 n n 
O4 C35 YUY sing 528 n n 
O12 C33 YUY sing 529 n n 
C33 C34 YUY sing 530 n n 
O5 C36 YUY sing 531 n n 
C35 C36 YUY sing 532 n n 
C35 C34 YUY sing 533 n n 
C34 O6 YUY sing 534 n n 
O10 C39 YUY sing 535 n n 
O6 C37 YUY sing 536 n n 
C37 C38 YUY sing 537 n n 
C37 O7 YUY sing 538 n n 
C42 O8 YUY sing 539 n n 
C42 C41 YUY sing 540 n n 
C38 C39 YUY sing 541 n n 
C38 O11 YUY sing 542 n n 
C39 C40 YUY sing 543 n n 
O7 C41 YUY sing 544 n n 
C41 C40 YUY sing 545 n n 
C40 O9 YUY sing 546 n n 
C8 H1 YUY sing 547 n n 
C5 H2 YUY sing 548 n n 
C5 H3 YUY sing 549 n n 
C6 H4 YUY sing 550 n n 
C2 H5 YUY sing 551 n n 
C2 H6 YUY sing 552 n n 
C H7 YUY sing 553 n n 
C H8 YUY sing 554 n n 
C H9 YUY sing 555 n n 
C1 H10 YUY sing 556 n n 
C3 H11 YUY sing 557 n n 
C3 H12 YUY sing 558 n n 
O5 H13 YUY sing 559 n n 
C7 H14 YUY sing 560 n n 
C7 H15 YUY sing 561 n n 
O8 H16 YUY sing 562 n n 
C9 H17 YUY sing 563 n n 
O9 H18 YUY sing 564 n n 
C10 H19 YUY sing 565 n n 
C10 H20 YUY sing 566 n n 
O10 H21 YUY sing 567 n n 
C11 H22 YUY sing 568 n n 
O11 H23 YUY sing 569 n n 
O12 H24 YUY sing 570 n n 
C13 H25 YUY sing 571 n n 
C13 H26 YUY sing 572 n n 
O13 H27 YUY sing 573 n n 
C14 H28 YUY sing 574 n n 
O14 H29 YUY sing 575 n n 
C15 H30 YUY sing 576 n n 
C15 H31 YUY sing 577 n n 
C16 H32 YUY sing 578 n n 
C16 H33 YUY sing 579 n n 
C18 H34 YUY sing 580 n n 
C18 H35 YUY sing 581 n n 
C18 H36 YUY sing 582 n n 
C19 H37 YUY sing 583 n n 
C20 H38 YUY sing 584 n n 
C20 H39 YUY sing 585 n n 
C21 H40 YUY sing 586 n n 
C21 H41 YUY sing 587 n n 
C23 H42 YUY sing 588 n n 
C23 H43 YUY sing 589 n n 
C23 H44 YUY sing 590 n n 
C24 H45 YUY sing 591 n n 
C25 H46 YUY sing 592 n n 
C26 H47 YUY sing 593 n n 
C26 H48 YUY sing 594 n n 
C26 H49 YUY sing 595 n n 
C27 H50 YUY sing 596 n n 
C27 H51 YUY sing 597 n n 
C28 H52 YUY sing 598 n n 
C28 H53 YUY sing 599 n n 
C29 H54 YUY sing 600 n n 
C30 H55 YUY sing 601 n n 
C30 H56 YUY sing 602 n n 
C31 H57 YUY sing 603 n n 
C32 H58 YUY sing 604 n n 
C33 H59 YUY sing 605 n n 
C34 H60 YUY sing 606 n n 
C35 H61 YUY sing 607 n n 
C36 H62 YUY sing 608 n n 
C36 H63 YUY sing 609 n n 
C37 H64 YUY sing 610 n n 
C38 H65 YUY sing 611 n n 
C39 H66 YUY sing 612 n n 
C40 H67 YUY sing 613 n n 
C41 H68 YUY sing 614 n n 
C42 H69 YUY sing 615 n n 
C42 H70 YUY sing 616 n n 
C43 H71 YUY sing 617 n n 
C43 H72 YUY sing 618 n n 
#
_atom_sites.entry_id                     7MBP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAG A 1 1501 1501 NAG NAG . 
F 3 YUV A 1 1502 3002 YUV DIO . 
G 4 YUY A 1 1503 3001 YUY GDP . 
H 2 NAG B 1 1501 1501 NAG NAG . 
I 3 YUV B 1 1502 3002 YUV DIO . 
J 4 YUY B 1 1503 3001 YUY GDP . 
K 2 NAG C 1 1501 1501 NAG NAG . 
L 3 YUV C 1 1502 3002 YUV DIO . 
M 4 YUY C 1 1503 3001 YUY GDP . 
N 4 YUY D 1 3001 3001 YUY GDP . 
O 2 NAG D 1 3002 1501 NAG NAG . 
P 3 YUV D 1 3003 3002 YUV DIO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 YUY . . . M 4 177.698 157.71 193.648 1 20 ? C8 YUY 1503 C 1 
HETATM 2 C C5 YUY . . . M 4 176.68 159.773 188.172 1 20 ? C5 YUY 1503 C 1 
HETATM 3 C C6 YUY . . . M 4 177.229 158.612 191.5 1 20 ? C6 YUY 1503 C 1 
HETATM 4 O O6 YUY . . . M 4 175.781 155.722 208.717 1 20 ? O6 YUY 1503 C 1 
HETATM 5 C C2 YUY . . . M 4 174.273 159.32 188.406 1 20 ? C2 YUY 1503 C 1 
HETATM 6 C C4 YUY . . . M 4 176.037 158.011 189.645 1 20 ? C4 YUY 1503 C 1 
HETATM 7 C C YUY . . . M 4 175.062 161.204 186.925 1 20 ? C YUY 1503 C 1 
HETATM 8 O O YUY . . . M 4 176.977 158.47 188.69 1 20 ? O YUY 1503 C 1 
HETATM 9 C C1 YUY . . . M 4 175.355 159.807 187.459 1 20 ? C1 YUY 1503 C 1 
HETATM 10 O O1 YUY . . . M 4 176.029 158.871 190.771 1 20 ? O1 YUY 1503 C 1 
HETATM 11 O O2 YUY . . . M 4 179.982 155.817 201.014 1 20 ? O2 YUY 1503 C 1 
HETATM 12 C C3 YUY . . . M 4 174.644 157.985 189.053 1 20 ? C3 YUY 1503 C 1 
HETATM 13 O O3 YUY . . . M 4 179.222 156.356 204.536 1 20 ? O3 YUY 1503 C 1 
HETATM 14 O O4 YUY . . . M 4 177.844 155.016 205.791 1 20 ? O4 YUY 1503 C 1 
HETATM 15 O O5 YUY . . . M 4 177.124 152.53 207.955 1 20 ? O5 YUY 1503 C 1 
HETATM 16 C C7 YUY . . . M 4 177.075 158.934 192.98 1 20 ? C7 YUY 1503 C 1 
HETATM 17 O O7 YUY . . . M 4 174.04 155.14 210.092 1 20 ? O7 YUY 1503 C 1 
HETATM 18 O O8 YUY . . . M 4 170.746 154.008 209.701 1 20 ? O8 YUY 1503 C 1 
HETATM 19 C C9 YUY . . . M 4 177.561 157.506 195.158 1 20 ? C9 YUY 1503 C 1 
HETATM 20 O O9 YUY . . . M 4 173.112 157.073 211.992 1 20 ? O9 YUY 1503 C 1 
HETATM 21 C C10 YUY . . . M 4 178.118 158.712 195.905 1 20 ? C10 YUY 1503 C 1 
HETATM 22 O O10 YUY . . . M 4 171.901 157.439 208.561 1 20 ? O10 YUY 1503 C 1 
HETATM 23 C C11 YUY . . . M 4 178.396 158.426 197.347 1 20 ? C11 YUY 1503 C 1 
HETATM 24 O O11 YUY . . . M 4 175.088 157.821 210.301 1 20 ? O11 YUY 1503 C 1 
HETATM 25 C C12 YUY . . . M 4 178.467 157.221 197.885 1 20 ? C12 YUY 1503 C 1 
HETATM 26 O O12 YUY . . . M 4 175.99 158.296 207.439 1 20 ? O12 YUY 1503 C 1 
HETATM 27 C C13 YUY . . . M 4 178.752 157.055 199.36 1 20 ? C13 YUY 1503 C 1 
HETATM 28 O O13 YUY . . . M 4 178.515 158.587 206.073 1 20 ? O13 YUY 1503 C 1 
HETATM 29 C C14 YUY . . . M 4 179.854 156.044 199.607 1 20 ? C14 YUY 1503 C 1 
HETATM 30 O O14 YUY . . . M 4 181.272 153.051 204.708 1 20 ? O14 YUY 1503 C 1 
HETATM 31 C C15 YUY . . . M 4 179.534 154.727 198.941 1 20 ? C15 YUY 1503 C 1 
HETATM 32 C C16 YUY . . . M 4 179.355 154.932 197.439 1 20 ? C16 YUY 1503 C 1 
HETATM 33 C C17 YUY . . . M 4 178.251 155.94 197.086 1 20 ? C17 YUY 1503 C 1 
HETATM 34 C C18 YUY . . . M 4 176.881 155.355 197.478 1 20 ? C18 YUY 1503 C 1 
HETATM 35 C C19 YUY . . . M 4 178.33 156.243 195.562 1 20 ? C19 YUY 1503 C 1 
HETATM 36 C C20 YUY . . . M 4 177.958 155.035 194.694 1 20 ? C20 YUY 1503 C 1 
HETATM 37 C C21 YUY . . . M 4 178.025 155.311 193.191 1 20 ? C21 YUY 1503 C 1 
HETATM 38 C C22 YUY . . . M 4 177.187 156.533 192.797 1 20 ? C22 YUY 1503 C 1 
HETATM 39 C C23 YUY . . . M 4 175.694 156.258 193.034 1 20 ? C23 YUY 1503 C 1 
HETATM 40 C C24 YUY . . . M 4 177.453 157.091 191.369 1 20 ? C24 YUY 1503 C 1 
HETATM 41 C C25 YUY . . . M 4 176.552 156.675 190.188 1 20 ? C25 YUY 1503 C 1 
HETATM 42 C C26 YUY . . . M 4 177.237 155.784 189.154 1 20 ? C26 YUY 1503 C 1 
HETATM 43 C C27 YUY . . . M 4 181.117 156.419 201.634 1 20 ? C27 YUY 1503 C 1 
HETATM 44 C C28 YUY . . . M 4 181.8 155.383 202.494 1 20 ? C28 YUY 1503 C 1 
HETATM 45 C C29 YUY . . . M 4 181.334 155.365 203.95 1 20 ? C29 YUY 1503 C 1 
HETATM 46 C C30 YUY . . . M 4 179.842 155.166 204.042 1 20 ? C30 YUY 1503 C 1 
HETATM 47 C C31 YUY . . . M 4 178.612 156.201 205.78 1 20 ? C31 YUY 1503 C 1 
HETATM 48 C C32 YUY . . . M 4 177.718 157.409 206.017 1 20 ? C32 YUY 1503 C 1 
HETATM 49 C C33 YUY . . . M 4 176.945 157.249 207.319 1 20 ? C33 YUY 1503 C 1 
HETATM 50 C C34 YUY . . . M 4 176.25 155.898 207.373 1 20 ? C34 YUY 1503 C 1 
HETATM 51 C C35 YUY . . . M 4 177.228 154.774 207.063 1 20 ? C35 YUY 1503 C 1 
HETATM 52 C C36 YUY . . . M 4 176.578 153.414 206.988 1 20 ? C36 YUY 1503 C 1 
HETATM 53 C C37 YUY . . . M 4 174.415 155.92 208.972 1 20 ? C37 YUY 1503 C 1 
HETATM 54 C C38 YUY . . . M 4 174.207 157.401 209.263 1 20 ? C38 YUY 1503 C 1 
HETATM 55 C C39 YUY . . . M 4 172.765 157.651 209.673 1 20 ? C39 YUY 1503 C 1 
HETATM 56 C C40 YUY . . . M 4 172.371 156.735 210.824 1 20 ? C40 YUY 1503 C 1 
HETATM 57 C C41 YUY . . . M 4 172.658 155.283 210.456 1 20 ? C41 YUY 1503 C 1 
HETATM 58 C C42 YUY . . . M 4 171.843 154.803 209.279 1 20 ? C42 YUY 1503 C 1 
HETATM 59 C C43 YUY . . . M 4 182.023 154.256 204.723 1 20 ? C43 YUY 1503 C 1 
#
_model_server_stats.io_time_ms              82 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           59 
#