data_7MBU
#
_model_server_result.job_id            d0HJ4emGCsFmz4Kb4TzPMA 
_model_server_result.datetime_utc      '2025-07-19 20:33:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7mbu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1501}' 
#
_entry.id    7MBU 
#
_exptl.entry_id    7MBU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7MBU 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7MBU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 J N N 
? 2 N N N 
? 2 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 921 A ASN 921 1_555 E C1 NAG . A NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale2 B ND2 ASN 921 B ASN 921 1_555 J C1 NAG . B NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale3 C ND2 ASN 921 C ASN 921 1_555 N C1 NAG . C NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale4 D ND2 ASN 921 D ASN 921 1_555 R C1 NAG . D NAG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
metalc ? metalc1 A OE1 GLU 768 A GLU 768 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc2 A OE2 GLU 768 A GLU 768 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? 
metalc ? metalc3 A OE1 GLN 771 A GLN 771 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? 
metalc ? metalc4 A OD1 ASN 794 A ASN 794 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? 
metalc ? metalc5 A OD2 ASP 797 A ASP 797 1_555 F CA CA . A CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? 
metalc ? metalc6 B OE1 GLU 768 B GLU 768 1_555 K CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc7 B OE2 GLU 768 B GLU 768 1_555 K CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? 
metalc ? metalc8 B OE1 GLN 771 B GLN 771 1_555 K CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? 
metalc ? metalc9 B OD1 ASN 794 B ASN 794 1_555 K CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc10 B OD2 ASP 797 B ASP 797 1_555 K CA CA . B CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc11 C OE1 GLU 768 C GLU 768 1_555 O CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc12 C OE2 GLU 768 C GLU 768 1_555 O CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? 
metalc ? metalc13 C OE1 GLN 771 C GLN 771 1_555 O CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? 
metalc ? metalc14 C OD1 ASN 794 C ASN 794 1_555 O CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? 
metalc ? metalc15 C OD2 ASP 797 C ASP 797 1_555 O CA CA . C CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc16 D OE1 GLU 768 D GLU 768 1_555 S CA CA . D CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc17 D OE2 GLU 768 D GLU 768 1_555 S CA CA . D CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? 
metalc ? metalc18 D OE1 GLN 771 D GLN 771 1_555 S CA CA . D CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? 
metalc ? metalc19 D OD1 ASN 794 D ASN 794 1_555 S CA CA . D CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc20 D OD2 ASP 797 D ASP 797 1_555 S CA CA . D CA 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 235 n n 
C1 O1 NAG sing 236 n n 
C1 O5 NAG sing 237 n n 
C1 H1 NAG sing 238 n n 
C2 C3 NAG sing 239 n n 
C2 N2 NAG sing 240 n n 
C2 H2 NAG sing 241 n n 
C3 C4 NAG sing 242 n n 
C3 O3 NAG sing 243 n n 
C3 H3 NAG sing 244 n n 
C4 C5 NAG sing 245 n n 
C4 O4 NAG sing 246 n n 
C4 H4 NAG sing 247 n n 
C5 C6 NAG sing 248 n n 
C5 O5 NAG sing 249 n n 
C5 H5 NAG sing 250 n n 
C6 O6 NAG sing 251 n n 
C6 H61 NAG sing 252 n n 
C6 H62 NAG sing 253 n n 
C7 C8 NAG sing 254 n n 
C7 N2 NAG sing 255 n n 
C7 O7 NAG doub 256 n n 
C8 H81 NAG sing 257 n n 
C8 H82 NAG sing 258 n n 
C8 H83 NAG sing 259 n n 
N2 HN2 NAG sing 260 n n 
O1 HO1 NAG sing 261 n n 
O3 HO3 NAG sing 262 n n 
O4 HO4 NAG sing 263 n n 
O6 HO6 NAG sing 264 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7MBU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAG A 1 1501 1501 NAG NAG . 
F 3 CA A 1 1502 2001 CA CA . 
G 4 YUY A 1 1503 3001 YUY GDP . 
H 5 YUV A 1 1504 3002 YUV DIO . 
I 4 YUY A 1 1505 3001 YUY GDP . 
J 2 NAG B 1 1501 1501 NAG NAG . 
K 3 CA B 1 1502 2001 CA CA . 
L 5 YUV B 1 1503 3002 YUV DIO . 
M 4 YUY B 1 1504 3001 YUY GDP . 
N 2 NAG C 1 1501 1501 NAG NAG . 
O 3 CA C 1 1502 2001 CA CA . 
P 5 YUV C 1 1503 3002 YUV DIO . 
Q 4 YUY C 1 1504 3001 YUY GDP . 
R 2 NAG D 1 1501 1501 NAG NAG . 
S 3 CA D 1 1502 2001 CA CA . 
T 5 YUV D 1 1503 3002 YUV DIO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . N 2 158.596 137.695 213.214 1 159.07 ? C1 NAG 1501 C 1 
HETATM 2 C C2 NAG . . . N 2 158.028 138.715 214.198 1 159.07 ? C2 NAG 1501 C 1 
HETATM 3 C C3 NAG . . . N 2 158.667 138.578 215.569 1 159.07 ? C3 NAG 1501 C 1 
HETATM 4 C C4 NAG . . . N 2 158.552 137.142 216.048 1 159.07 ? C4 NAG 1501 C 1 
HETATM 5 C C5 NAG . . . N 2 159.125 136.185 215.011 1 159.07 ? C5 NAG 1501 C 1 
HETATM 6 C C6 NAG . . . N 2 158.932 134.735 215.442 1 159.07 ? C6 NAG 1501 C 1 
HETATM 7 C C7 NAG . . . N 2 157.254 140.709 213.032 1 159.07 ? C7 NAG 1501 C 1 
HETATM 8 C C8 NAG . . . N 2 157.65 141.308 211.716 1 159.07 ? C8 NAG 1501 C 1 
HETATM 9 N N2 NAG . . . N 2 158.214 140.063 213.691 1 159.07 ? N2 NAG 1501 C 1 
HETATM 10 O O3 NAG . . . N 2 157.992 139.437 216.491 1 159.07 ? O3 NAG 1501 C 1 
HETATM 11 O O4 NAG . . . N 2 159.267 137 217.282 1 159.07 ? O4 NAG 1501 C 1 
HETATM 12 O O5 NAG . . . N 2 158.495 136.368 213.74 1 159.07 ? O5 NAG 1501 C 1 
HETATM 13 O O6 NAG . . . N 2 159.3 134.594 216.819 1 159.07 ? O6 NAG 1501 C 1 
HETATM 14 O O7 NAG . . . N 2 156.121 140.809 213.468 1 159.07 ? O7 NAG 1501 C 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#